Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 0.0e+00 1855.9 958 100.0
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 0.0e+00 1675.6 957 90.5
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 0.0e+00 1579.3 959 83.9
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 0.0e+00 1470.3 1019 75.4
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 0.0e+00 1144.8 932 66.5
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 0.0e+00 1100.9 981 61.5
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 0.0e+00 1094.3 986 60.1
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 0.0e+00 1079.3 978 61.2
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 0.0e+00 1076.2 1006 59.3
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 1.3e-311 1073.2 978 59.8
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 2.3e-307 1058.9 976 60.1
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 4.1e-304 1048.1 973 59.5
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 5.9e-303 1044.3 978 58.5
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 9.4e-301 1036.9 976 57.3
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 4.6e-300 1034.6 960 59.3
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 1.8e-296 1022.7 978 58.4
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.4e-296 1022.3 977 58.2
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 3.4e-295 1018.5 988 57.1
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.7e-294 1016.1 977 57.8
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 2.1e-292 1009.2 973 57.5
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.8e-291 1006.1 986 57.3
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 9.7e-290 1000.3 969 56.1
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 6.3e-289 997.7 976 58.0
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 1.1e-288 996.9 937 57.0
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 2.6e-287 992.3 973 56.2
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 2.2e-286 989.2 971 55.4
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 1.9e-285 986.1 971 57.8
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 1.9e-285 986.1 971 55.5
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.5e-285 985.7 978 57.1
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 9.4e-285 983.8 933 59.5
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 2.1e-284 982.6 974 55.9
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.6e-284 981.9 978 56.6
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 3.6e-284 981.9 958 57.8
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 8.0e-284 980.7 978 57.2
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 5.2e-283 978.0 985 55.8
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 5.2e-283 978.0 978 54.2
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 5.2e-283 978.0 972 55.7
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 9.7e-282 973.8 985 55.9
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.7e-281 973.0 985 55.5
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 2.2e-281 972.6 974 56.2
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 1.1e-280 970.3 903 58.8
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 3.8e-278 961.8 979 55.0
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 5.0e-278 961.4 980 54.0
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 5.0e-278 961.4 980 55.1
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 3.2e-277 958.7 980 55.3
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 9.4e-277 957.2 1010 54.4
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 9.4e-277 957.2 938 57.8
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 1.2e-276 956.8 958 55.3
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 2.1e-276 956.1 971 54.6
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 1.2e-274 950.3 983 54.8
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 8.3e-273 944.1 964 54.4
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 9.1e-272 940.6 979 52.9
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 3.5e-271 938.7 822 61.2
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 1.0e-270 937.2 976 53.7
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 2.3e-270 936.0 983 53.6
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 2.3e-270 936.0 983 53.6
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 8.6e-270 934.1 977 54.0
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 4.2e-269 931.8 981 52.8
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 3.6e-268 928.7 952 54.7
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 2.2e-265 919.5 959 52.9
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 2.8e-265 919.1 972 53.7
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 6.3e-265 917.9 1061 50.3
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 1.1e-264 917.1 978 54.3
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 7.3e-261 904.4 978 53.1
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 8.0e-260 901.0 950 52.2
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 2.3e-259 899.4 888 54.8
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 2.0e-258 896.3 922 53.7
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 7.5e-258 894.4 977 52.2
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 1.4e-256 890.2 982 52.7
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 3.2e-256 889.0 977 51.9
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 5.4e-256 888.3 844 58.1
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 2.7e-255 885.9 968 51.9
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 1.3e-254 883.6 981 51.1
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 9.5e-253 877.5 948 53.0
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 1.4e-251 873.6 961 52.2
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 7.5e-250 867.8 1008 50.7
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.2e-247 860.5 980 50.4
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 2.1e-247 859.8 957 51.9
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 6.0e-247 858.2 955 52.7
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 4.3e-245 852.0 894 51.9
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 2.1e-244 849.7 961 51.1
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 3.1e-243 845.9 980 50.7
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 8.9e-243 844.3 962 49.9
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 2.6e-242 842.8 928 51.1
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 1.6e-239 833.6 963 51.1
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 2.7e-239 832.8 944 51.2
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 7.8e-239 831.2 945 51.3
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 3.6e-236 822.4 943 50.7
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 3.6e-236 822.4 964 49.7
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 1.8e-235 820.1 939 50.3
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 3.4e-234 815.8 692 62.0
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 1.9e-232 810.1 958 49.4
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 9.2e-232 807.7 917 49.7
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 1.0e-230 804.3 787 56.5
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 6.6e-230 801.6 692 60.8
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 7.6e-226 788.1 930 50.4
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 4.2e-224 782.3 995 48.1
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 5.4e-224 781.9 694 59.9
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.3e-222 776.5 1006 46.7
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 6.9e-219 765.0 947 46.9
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 3.7e-204 716.1 692 56.4
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.3e-201 707.6 603 62.2
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.2e-200 702.6 711 55.3
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 3.3e-197 693.0 736 53.3
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 5.3e-195 685.6 930 44.4
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 1.0e-185 654.8 672 51.8
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 1.1e-184 651.4 969 42.6
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.8e-182 644.0 962 41.4
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.1e-181 641.3 962 43.3
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 1.1e-179 634.8 461 71.6
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 3.1e-171 606.7 450 69.8
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 2.1e-167 594.0 681 48.2
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 1.8e-163 580.9 725 45.1
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 7.7e-162 575.5 688 50.1
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 2.9e-161 573.5 586 52.0
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 5.0e-161 572.8 707 47.4
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 8.3e-148 528.9 693 44.0
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 6.6e-145 519.2 727 43.7
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 1.6e-143 514.6 857 38.5
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 2.8e-143 513.8 632 44.6
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 9.2e-139 498.8 743 44.0
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 8.1e-127 459.1 518 50.2
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 7.1e-115 419.5 698 40.0
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.4e-110 405.2 551 45.2
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 1.3e-105 388.7 286 69.6
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 4.8e-103 380.2 679 35.6
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 8.1e-103 379.4 497 42.5
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 7.9e-90 336.3 267 68.2
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 7.6e-85 319.7 448 43.8
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.3e-71 275.8 202 68.3
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 8.2e-71 273.1 236 62.7
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 2.1e-66 258.5 250 59.2
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 8.8e-65 253.1 190 67.9
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.6e-61 241.5 177 67.8
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 1.2e-58 232.6 255 48.2
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.8e-47 194.9 132 76.5
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 8.3e-47 193.4 167 61.7
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 3.1e-46 191.4 174 55.2
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 1.0e-44 186.4 312 39.7
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 2.5e-43 181.8 133 66.2
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 1.8e-38 165.6 279 42.3
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 1.3e-31 142.9 529 26.8
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 7.0e-30 137.1 114 57.9
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 9.2e-30 136.7 196 45.9
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 2.7e-29 135.2 303 34.3
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 2.9e-28 131.7 80 77.5
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 1.5e-19 102.8 444 24.1
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 1.1e-17 96.7 352 30.1
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 8.3e-15 87.0 96 44.8
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.4e-14 86.3 43 93.0
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 2.6e-08 65.5 47 59.6
GSVIVG01006141001 Vitis vinifera HOM05D004501 ORTHO05D004944 7.1e-06 57.4 63 46.0


User provided reference genes

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