Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 1.2e-155 553.1 282 100.0
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 3.6e-144 515.0 282 91.8
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 8.4e-141 503.8 266 96.2
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 9.3e-140 500.4 282 89.0
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 3.7e-136 488.4 282 87.2
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 8.1e-136 487.3 282 85.8
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 3.1e-135 485.3 280 85.7
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 2.6e-134 482.3 282 84.8
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 2.6e-134 482.3 282 85.1
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 2.2e-133 479.2 282 84.0
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 2.2e-133 479.2 282 84.4
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 6.5e-133 477.6 282 82.3
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 6.5e-133 477.6 282 84.4
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 6.5e-133 477.6 282 84.0
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 6.5e-133 477.6 282 84.0
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 1.4e-132 476.5 282 81.9
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 1.4e-132 476.5 282 82.3
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 1.9e-132 476.1 282 85.8
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 1.9e-132 476.1 282 84.4
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.9e-132 476.1 282 83.7
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 3.2e-132 475.3 282 84.0
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 4.2e-132 474.9 282 83.3
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 4.6e-131 471.5 280 82.9
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 1.0e-130 470.3 293 79.2
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 1.8e-130 469.5 282 82.6
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 3.0e-130 468.8 282 83.0
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 3.0e-130 468.8 282 83.0
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 3.0e-130 468.8 282 82.3
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 5.1e-130 468.0 282 81.9
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 1.1e-129 466.8 282 81.6
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 1.9e-129 466.1 282 82.3
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 1.9e-129 466.1 295 82.4
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 4.3e-129 464.9 282 82.3
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 4.3e-129 464.9 282 81.6
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 5.7e-129 464.5 282 81.6
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 9.6e-129 463.8 282 80.5
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 2.1e-128 462.6 282 81.9
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 2.1e-128 462.6 282 81.2
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 3.7e-128 461.8 282 80.9
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 8.2e-128 460.7 281 80.8
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 1.1e-127 460.3 282 80.5
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 2.4e-127 459.1 282 79.1
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 3.1e-127 458.8 282 79.8
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 4.0e-127 458.4 282 80.9
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 1.5e-126 456.4 282 80.9
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 2.6e-126 455.7 282 79.8
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 3.4e-126 455.3 282 79.4
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 3.4e-126 455.3 282 79.4
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 4.5e-126 454.9 282 79.8
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 7.6e-126 454.1 281 80.1
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 1.0e-125 453.8 282 79.4
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 2.9e-125 452.2 282 78.4
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 1.1e-124 450.3 282 79.1
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 1.1e-124 450.3 282 78.4
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 1.9e-124 449.5 282 76.6
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.2e-124 448.4 277 80.9
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 5.5e-124 448.0 282 78.4
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 4.6e-123 444.9 282 78.0
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 6.1e-123 444.5 284 78.5
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 1.8e-122 443.0 282 78.4
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.8e-122 443.0 286 77.3
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 2.3e-122 442.6 269 79.9
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 3.0e-122 442.2 282 78.0
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 5.1e-122 441.4 282 78.7
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 8.7e-122 440.7 282 78.0
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 1.1e-121 440.3 282 75.9
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 3.3e-121 438.7 266 83.8
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.6e-120 436.4 288 76.4
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 2.2e-120 436.0 285 79.3
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 2.8e-120 435.6 282 75.9
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 1.1e-119 433.7 283 78.1
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 1.2e-118 430.3 341 66.9
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 1.5e-118 429.9 283 76.7
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 2.0e-118 429.5 282 74.5
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 2.6e-118 429.1 316 69.3
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 4.5e-118 428.3 281 75.4
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 4.5e-118 428.3 283 75.6
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 7.7e-118 427.6 283 76.0
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 1.7e-117 426.4 282 76.6
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 2.2e-117 426.0 282 73.8
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 2.2e-117 426.0 290 74.5
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 3.8e-117 425.2 283 74.6
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 3.8e-117 425.2 282 76.2
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 3.8e-117 425.2 266 77.1
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 5.0e-117 424.9 282 77.7
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 7.2e-116 421.0 278 74.5
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 7.2e-116 421.0 283 74.9
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 1.2e-115 420.2 283 74.9
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 1.6e-115 419.9 283 74.2
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 1.6e-115 419.9 286 74.8
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 2.1e-115 419.5 282 73.4
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 2.7e-115 419.1 282 74.5
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 3.6e-115 418.7 283 74.6
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 6.1e-115 417.9 286 74.8
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 7.9e-115 417.5 286 74.5
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 1.4e-114 416.8 286 74.5
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 1.4e-114 416.8 286 74.1
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 1.4e-114 416.8 282 75.9
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 3.9e-114 415.2 286 73.1
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 1.5e-113 413.3 286 74.8
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 2.0e-113 412.9 286 74.8
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 2.5e-113 412.5 279 74.2
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 3.3e-113 412.1 286 74.5
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 3.3e-113 412.1 286 74.8
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 5.7e-113 411.4 286 74.5
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 5.7e-113 411.4 240 84.6
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 7.4e-113 411.0 286 70.6
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 1.3e-112 410.2 281 73.3
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 4.8e-112 408.3 286 74.1
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 6.3e-112 407.9 266 75.2
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 8.2e-112 407.5 325 64.9
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 2.4e-111 406.0 282 75.2
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 2.4e-111 406.0 313 67.4
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 5.3e-111 404.8 267 75.7
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 9.1e-111 404.1 282 68.4
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 9.1e-111 404.1 282 68.4
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.2e-110 403.7 282 72.0
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 4.5e-110 401.7 266 74.1
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 7.7e-110 401.0 286 69.2
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 2.2e-109 399.4 276 74.3
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 1.4e-108 396.7 272 74.6
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 9.4e-108 394.0 283 71.0
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 1.4e-106 390.2 282 72.0
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 1.4e-106 390.2 282 72.0
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.5e-105 386.7 281 69.4
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 7.4e-105 384.4 282 72.3
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.8e-103 379.8 306 64.1
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 2.4e-103 379.4 272 72.4
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 5.9e-102 374.8 287 67.6
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 1.7e-101 373.2 250 75.2
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 1.1e-100 370.5 247 73.7
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 9.4e-100 367.5 276 70.7
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 3.6e-99 365.5 231 77.1
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 2.3e-98 362.8 213 82.6
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 5.2e-98 361.7 283 61.1
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 8.2e-96 354.4 266 65.0
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 3.1e-95 352.4 341 59.2
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 4.1e-95 352.1 283 66.1
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 5.9e-94 348.2 223 75.8
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 1.5e-92 343.6 213 77.5
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 1.2e-91 340.5 267 65.5
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 4.0e-90 335.5 258 70.5
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 4.4e-89 332.0 279 62.4
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 4.0e-82 308.9 249 67.1
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 5.9e-78 295.0 283 56.2
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 8.0e-75 284.6 281 58.0
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 3.7e-72 275.8 239 60.7
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 3.2e-71 272.7 213 60.1
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.1e-55 219.2 282 50.4
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 9.2e-55 218.0 328 44.8
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 1.6e-51 207.2 172 61.0
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 3.6e-51 206.1 173 59.0
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 8.1e-51 204.9 209 59.3
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 1.2e-46 191.0 175 57.7
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 2.1e-46 190.3 120 70.8
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 6.2e-43 178.7 269 43.9
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 2.0e-41 173.7 122 69.7
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 3.8e-40 169.5 180 51.1
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 7.1e-31 138.7 283 38.5
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 1.1e-28 131.3 85 71.8
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 4.8e-27 125.9 280 37.5
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 1.5e-25 120.9 217 34.6
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.1e-23 114.8 120 50.0
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 7.9e-22 108.6 164 43.9
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 7.9e-22 108.6 182 41.8
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.9e-20 104.0 66 81.8
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.6e-19 100.9 94 55.3
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.6e-14 84.3 52 84.6
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.8e-11 73.6 109 47.7
SEGI_16571 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 5.5e-07 59.3 62 51.6


User provided reference genes

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