Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 1.4e-117 426.4 225 100.0
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 7.0e-106 387.5 225 90.2
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 2.5e-95 352.4 225 84.0
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 1.4e-90 336.7 238 76.9
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 5.0e-88 328.2 225 79.6
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 4.9e-83 311.6 224 75.0
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 8.9e-77 290.8 203 75.9
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 7.6e-76 287.7 203 75.4
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 5.4e-74 281.6 210 71.4
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 9.2e-74 280.8 208 72.1
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 9.2e-74 280.8 226 67.7
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 1.6e-73 280.0 221 69.2
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 1.6e-73 280.0 220 69.1
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 2.7e-73 279.3 220 70.0
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 4.6e-73 278.5 220 67.7
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 1.3e-72 276.9 202 71.3
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 3.9e-72 275.4 220 69.1
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 8.6e-72 274.2 205 71.2
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 4.3e-71 271.9 220 64.1
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 2.1e-70 269.6 221 65.2
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 3.6e-70 268.9 223 65.9
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 4.7e-70 268.5 220 66.4
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 1.1e-69 267.3 222 68.5
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 2.4e-69 266.2 220 67.3
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 3.1e-69 265.8 204 69.6
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 6.8e-69 264.6 224 62.1
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 8.9e-69 264.2 209 67.5
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 2.0e-68 263.1 221 66.5
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 2.6e-68 262.7 219 66.7
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 5.8e-68 261.5 220 63.6
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 5.8e-68 261.5 224 64.3
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 9.9e-68 260.8 221 64.3
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 2.9e-67 259.2 204 68.6
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 1.1e-66 257.3 210 65.2
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 1.1e-66 257.3 210 65.2
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 1.1e-66 257.3 221 62.9
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 4.2e-66 255.4 211 66.4
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 5.4e-66 255.0 221 64.3
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 2.1e-65 253.1 206 65.0
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 1.3e-64 250.4 267 57.3
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 3.9e-64 248.8 219 58.9
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 5.1e-64 248.4 204 67.6
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 6.6e-64 248.1 208 64.4
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.1e-63 247.3 221 62.0
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 1.5e-63 246.9 224 62.9
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.9e-63 246.5 170 73.5
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 2.5e-63 246.1 208 63.9
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 3.3e-63 245.7 205 64.9
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 4.3e-63 245.4 211 63.0
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 7.3e-63 244.6 209 64.1
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 7.3e-63 244.6 219 60.7
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 9.6e-63 244.2 201 64.2
Sopen03g039690 Solanum pennellii HOM05D005732 ORTHO05D007062 2.1e-62 243.0 219 59.8
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 3.6e-62 242.3 216 61.1
Solyc03g120870.3 Solanum lycopersicum HOM05D005732 ORTHO05D007062 3.6e-62 242.3 219 59.4
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 6.2e-62 241.5 221 61.1
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 6.2e-62 241.5 170 71.2
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 1.8e-61 240.0 221 61.1
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 4.0e-61 238.8 226 60.6
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 9.0e-61 237.7 226 61.1
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 1.2e-60 237.3 145 80.7
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 1.5e-60 236.9 187 66.3
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 1.5e-60 236.9 195 63.6
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 3.4e-60 235.7 170 71.2
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 3.4e-60 235.7 204 62.3
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 7.6e-60 234.6 224 58.5
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 9.9e-60 234.2 221 59.7
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 1.7e-59 233.4 212 58.5
PGSC0003DMG400002535 Solanum tuberosum HOM05D005732 ORTHO05D007062 3.8e-59 232.3 219 58.9
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 4.9e-59 231.9 228 59.2
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 6.4e-59 231.5 214 59.8
Peaxi162Scf00038g00842 Petunia axillaris HOM05D005732 ORTHO05D007062 4.2e-58 228.8 220 57.3
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 1.2e-57 227.3 227 57.3
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 2.7e-57 226.1 226 56.6
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 2.7e-57 226.1 220 55.5
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 2.7e-57 226.1 253 53.4
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 6.0e-57 224.9 195 60.5
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 7.9e-57 224.6 203 60.1
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 7.9e-57 224.6 222 57.2
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 1.3e-56 223.8 165 68.5
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 2.5e-55 219.5 202 61.4
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 5.6e-55 218.4 168 64.9
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 1.3e-54 217.2 222 53.6
MBI19_g26309_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 1.6e-54 216.9 221 53.8
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 4.8e-54 215.3 229 55.9
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 2.4e-53 213.0 170 64.1
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 5.3e-53 211.8 182 63.2
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 2.6e-52 209.5 177 59.9
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 4.5e-52 208.8 226 55.8
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 7.1e-50 201.4 179 64.2
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 2.1e-49 199.9 200 54.5
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 1.8e-45 186.8 160 61.9
Duzib160G0019 Durio zibethinus HOM05D005732 ORTHO05D007062 6.9e-45 184.9 169 62.1
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 9.0e-45 184.5 170 55.9
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 4.9e-43 178.7 178 51.1
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 8.4e-43 177.9 164 53.7
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.4e-42 177.2 171 51.5
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.4e-42 177.2 171 51.5
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 3.2e-42 176.0 147 59.2
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 5.5e-42 175.3 127 69.3
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 9.3e-42 174.5 172 52.3
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 2.1e-41 173.3 172 51.2
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 2.1e-41 173.3 170 50.6
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 3.5e-41 172.6 174 51.1
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 3.5e-41 172.6 172 51.2
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 2.3e-40 169.9 171 49.1
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 3.0e-40 169.5 172 50.0
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 3.0e-40 169.5 219 48.4
Prupe.3G065500 Prunus persica HOM05D005732 ORTHO05D007062 3.9e-40 169.1 116 74.1
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 6.7e-40 168.3 171 49.7
MBI04_g44953_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 3.3e-39 166.0 110 70.9
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 2.1e-38 163.3 180 49.4
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 3.7e-38 162.5 170 48.8
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 1.4e-37 160.6 171 46.8
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 1.8e-37 160.2 181 47.0
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 4.1e-37 159.1 168 50.6
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 6.9e-37 158.3 181 48.6
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 9.0e-37 157.9 169 47.3
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 1.5e-36 157.1 169 46.2
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 2.6e-36 156.4 169 45.6
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 2.6e-36 156.4 169 47.3
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 2.6e-36 156.4 169 45.6
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 2.9e-35 152.9 167 47.9
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 5.0e-35 152.1 162 45.7
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 1.4e-34 150.6 165 47.9
vmacro17018 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 2.5e-34 149.8 151 57.6
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 3.2e-34 149.4 168 46.4
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 5.5e-34 148.7 165 47.3
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 5.5e-34 148.7 165 47.3
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 1.2e-33 147.5 167 46.1
ATR0705G122 Amborella trichopoda HOM05D005732 ORTHO05D007062 3.0e-32 142.9 144 55.6
CDE02G4152 Ceratophyllum demersum HOM05D005732 ORTHO05D007062 1.8e-29 133.7 213 35.2
Dinv30452 Davidia involucrata HOM05D005732 ORTHO05D007062 1.7e-27 127.1 126 61.9
ClCG09G000040 Citrullus lanatus HOM05D005732 ORTHO05D007062 2.3e-24 116.7 141 47.5
ATR0705G087 Amborella trichopoda HOM05D005732 ORTHO05D007062 3.6e-17 92.8 64 65.6
CARHR074750 Cardamine hirsuta HOM05D005732 ORTHO05D007062 1.1e-13 81.3 70 57.1
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.8e-13 80.5 84 53.6
TAR622G0113 Trochodendron aralioides HOM05D003184 ORTHO05D000394 2.5e-10 70.1 148 31.8
Dinv33298 Davidia involucrata HOM05D003184 ORTHO05D000394 3.2e-10 69.7 163 33.1
Actinidia23302 Actinidia chinensis HOM05D003184 ORTHO05D000394 1.8e-08 63.9 159 30.8
CARHR049040 Cardamine hirsuta HOM05D005732 ORTHO05D007062 1.8e-08 63.9 40 72.5
Dinv25627 Davidia involucrata HOM05D003184 ORTHO05D000394 2.3e-08 63.5 157 32.5
Sc15g0002000 Simmondsia chinensis HOM05D005732 ORTHO05D007062 3.0e-08 63.2 40 72.5
ATR0624G041 Amborella trichopoda HOM05D002232 ORTHO05D002323 1.1e-07 61.2 186 30.6
EL10Ac6g13375 Beta vulgaris HOM05D003184 ORTHO05D000394 2.0e-07 60.5 181 24.3
Cpa.g.sc70.94 Carica papaya HOM05D003184 ORTHO05D000394 2.0e-07 60.5 169 27.8
CiPaw.04G002500 Carya illinoinensis HOM05D003184 ORTHO05D000394 2.0e-07 60.5 164 29.9
Rhsim10G0002700 Rhododendron simsii HOM05D003184 ORTHO05D000394 2.0e-07 60.5 166 29.5
Pp3c10_17030 Physcomitrium patens HOM05D000748 ORTHO05D000394 4.4e-07 59.3 171 30.4
FAN06G2974 Fragaria x ananassa HOM05D005509 ORTHO05D006411 9.7e-07 58.2 170 24.7
MBI14_g11685_MAGBIO Magnolia biondii HOM05D005509 ORTHO05D006411 9.7e-07 58.2 159 28.3
QL02p070196 Quercus lobata HOM05D003184 ORTHO05D000394 9.7e-07 58.2 154 29.2
FAN01G1468 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.3e-06 57.8 170 24.7
FAN06G1416 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.3e-06 57.8 170 24.7
arahy.Tifrunner.gnm1.ann1.A2ENIY Arachis hypogaea HOM05D003184 ORTHO05D000394 1.7e-06 57.4 145 27.6
arahy.Tifrunner.gnm1.ann1.BTBE2F Arachis hypogaea HOM05D003184 ORTHO05D000394 1.7e-06 57.4 145 27.6
Ciclev10032880m.g Citrus clementina HOM05D003184 ORTHO05D000394 1.7e-06 57.4 174 28.2
Eucgr.I01612 Eucalyptus grandis HOM05D003184 ORTHO05D000394 1.7e-06 57.4 161 26.1
FAN03G3362 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.7e-06 57.4 170 25.3
Psat1g173800 Pisum sativum HOM05D002232 ORTHO05D002323 1.7e-06 57.4 166 28.9
Sc07g0003650 Simmondsia chinensis HOM05D003184 ORTHO05D000394 1.7e-06 57.4 167 26.3
arahy.Tifrunner.gnm1.ann1.N0DIBZ Arachis hypogaea HOM05D003184 ORTHO05D000394 2.2e-06 57.0 151 29.8
ATR0582G016 Amborella trichopoda HOM05D000748 ORTHO05D000394 2.8e-06 56.6 148 25.0
arahy.Tifrunner.gnm1.ann1.KQH5YQ Arachis hypogaea HOM05D003184 ORTHO05D000394 2.8e-06 56.6 145 29.0
FvH4_7g22070 Fragaria vesca HOM05D005509 ORTHO05D006411 3.7e-06 56.2 170 24.7
Nn2g10410 Nelumbo nucifera HOM05D005509 ORTHO05D006411 3.7e-06 56.2 161 26.7
RcHm_v2.0_Chr1g0366461 Rosa chinensis HOM05D005509 ORTHO05D006411 3.7e-06 56.2 170 25.3
RcHm_v2.0_Chr7g0189121 Rosa chinensis HOM05D003184 ORTHO05D000394 3.7e-06 56.2 158 27.2
TAR374G1504 Trochodendron aralioides HOM05D003184 ORTHO05D000394 3.7e-06 56.2 159 26.4
PGSC0003DMG400027734 Solanum tuberosum HOM05D005509 ORTHO05D006411 4.8e-06 55.8 161 30.4
AUR62041204 Chenopodium quinoa HOM05D001151 ORTHO05D001504 6.3e-06 55.5 169 25.4
HanXRQChr16g0516411 Helianthus annuus HOM05D002232 ORTHO05D002323 6.3e-06 55.5 118 36.4
QL08p059131 Quercus lobata HOM05D005509 ORTHO05D006411 6.3e-06 55.5 161 27.3
Sopen04g005600 Solanum pennellii HOM05D005509 ORTHO05D006411 8.2e-06 55.1 161 29.8
Zm00001eb087050 Zea mays HOM05D002464 ORTHO05D002530 8.2e-06 55.1 172 31.4


User provided reference genes

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