Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G027520 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.2e-29 132.5 66 100.0
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 2.3e-12 75.1 49 73.5
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 3.9e-12 74.3 49 73.5
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 1.1e-11 72.8 48 70.8
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 1.5e-11 72.4 49 73.5
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 4.3e-11 70.9 46 71.7
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 7.3e-11 70.1 50 66.0
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 9.5e-11 69.7 45 73.3
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 1.2e-10 69.3 63 55.6
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 1.6e-10 68.9 50 70.0
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 3.6e-10 67.8 46 71.7
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 4.7e-10 67.4 58 62.1
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 4.7e-10 67.4 49 65.3
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 8.0e-10 66.6 46 71.7
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 1.0e-09 66.2 58 60.3
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 1.4e-09 65.9 50 66.0
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 1.4e-09 65.9 50 66.0
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 1.8e-09 65.5 58 63.8
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 1.8e-09 65.5 58 63.8
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 2.3e-09 65.1 58 63.8
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 5.2e-09 63.9 58 63.8
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 5.2e-09 63.9 47 68.1
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 5.2e-09 63.9 45 73.3
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 6.8e-09 63.5 60 56.7
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 8.9e-09 63.2 59 57.6
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 1.2e-08 62.8 45 71.1
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 1.2e-08 62.8 45 71.1
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 1.2e-08 62.8 48 68.8
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 1.5e-08 62.4 46 71.7
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 1.5e-08 62.4 54 61.1
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 1.5e-08 62.4 56 62.5
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 2.0e-08 62.0 50 66.0
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 2.0e-08 62.0 50 64.0
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 2.0e-08 62.0 50 62.0
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 2.0e-08 62.0 46 65.2
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 2.0e-08 62.0 49 65.3
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 2.6e-08 61.6 54 61.1
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 2.6e-08 61.6 49 61.2
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 2.6e-08 61.6 48 62.5
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 2.6e-08 61.6 46 67.4
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 2.6e-08 61.6 44 70.5
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 2.6e-08 61.6 50 66.0
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 3.4e-08 61.2 48 64.6
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 3.4e-08 61.2 48 64.6
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 3.4e-08 61.2 61 60.7
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 3.4e-08 61.2 61 60.7
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 3.4e-08 61.2 58 58.6
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 3.4e-08 61.2 58 58.6
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 4.4e-08 60.8 58 56.9
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 4.4e-08 60.8 58 56.9
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 4.4e-08 60.8 45 66.7
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 5.8e-08 60.5 48 62.5
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 5.8e-08 60.5 47 68.1
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 7.5e-08 60.1 50 64.0
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 7.5e-08 60.1 47 68.1
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 7.5e-08 60.1 46 69.6
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 7.5e-08 60.1 48 62.5
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 9.8e-08 59.7 47 70.2
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 1.3e-07 59.3 46 65.2
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 1.3e-07 59.3 46 65.2
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 1.3e-07 59.3 59 54.2
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 1.3e-07 59.3 46 67.4
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 1.7e-07 58.9 47 66.0
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 1.7e-07 58.9 46 63.0
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 1.7e-07 58.9 47 63.8
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 2.9e-07 58.2 46 67.4
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 2.9e-07 58.2 49 55.1
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 2.9e-07 58.2 49 55.1
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 2.9e-07 58.2 48 62.5
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 2.9e-07 58.2 46 65.2
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 3.7e-07 57.8 46 65.2
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 4.9e-07 57.4 45 66.7
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 4.9e-07 57.4 45 66.7
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 6.4e-07 57.0 45 66.7
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 6.4e-07 57.0 44 68.2
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 8.3e-07 56.6 48 66.7
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 1.4e-06 55.8 48 60.4
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 1.4e-06 55.8 48 64.6
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 1.4e-06 55.8 58 58.6
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 1.4e-06 55.8 48 58.3
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 1.9e-06 55.5 49 61.2
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 1.9e-06 55.5 58 56.9
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 3.2e-06 54.7 47 61.7
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 3.2e-06 54.7 47 61.7
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 4.1e-06 54.3 47 61.7
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 4.1e-06 54.3 47 61.7
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 5.4e-06 53.9 47 59.6
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 7.0e-06 53.5 43 65.1


User provided reference genes

Program Settings