Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.2e-115 419.9 217 100.0
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 5.3e-111 404.4 217 95.9
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.4e-106 389.8 217 90.8
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 5.7e-105 384.4 217 88.5
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 1.3e-104 383.3 219 89.0
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 1.4e-103 379.8 214 89.3
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 7.7e-102 374.0 219 86.8
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 2.9e-101 372.1 220 85.5
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 2.9e-101 372.1 216 86.1
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 2.5e-100 369.0 219 85.4
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 5.5e-100 367.9 219 84.9
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 3.6e-99 365.2 221 83.7
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 4.7e-99 364.8 219 83.6
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 6.1e-99 364.4 216 84.7
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 1.4e-98 363.2 219 84.9
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 1.4e-98 363.2 219 83.6
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 1.8e-98 362.8 220 83.6
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 2.3e-98 362.5 219 84.5
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 3.0e-98 362.1 216 84.3
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 4.0e-98 361.7 219 83.1
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 6.8e-98 360.9 220 83.2
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 6.8e-98 360.9 216 84.3
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 8.8e-98 360.5 219 83.1
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 1.2e-97 360.1 220 82.7
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 1.5e-97 359.8 219 82.2
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 2.0e-97 359.4 220 83.2
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 2.6e-97 359.0 219 82.2
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 3.4e-97 358.6 218 83.0
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 4.4e-97 358.2 220 84.5
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 5.7e-97 357.8 220 82.3
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 7.5e-97 357.5 220 80.9
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 7.5e-97 357.5 219 82.2
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 9.8e-97 357.1 219 83.1
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 1.3e-96 356.7 218 82.6
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 1.3e-96 356.7 218 82.6
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.3e-96 356.7 220 83.2
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 1.7e-96 356.3 219 84.5
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 1.7e-96 356.3 221 84.2
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 2.2e-96 355.9 220 82.3
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 2.8e-96 355.5 220 81.4
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 2.8e-96 355.5 220 81.4
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 2.8e-96 355.5 218 81.7
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 3.7e-96 355.1 218 81.7
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 3.7e-96 355.1 220 80.9
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 3.7e-96 355.1 220 80.9
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 4.9e-96 354.8 220 81.4
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 4.9e-96 354.8 218 81.7
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 4.9e-96 354.8 230 80.4
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 4.9e-96 354.8 220 82.7
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 6.3e-96 354.4 220 80.9
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 6.3e-96 354.4 220 82.7
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 8.3e-96 354.0 220 80.9
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 8.3e-96 354.0 218 81.2
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 8.3e-96 354.0 221 80.5
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 1.1e-95 353.6 220 80.5
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 1.1e-95 353.6 221 81.0
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 1.4e-95 353.2 220 83.2
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 1.8e-95 352.8 220 80.0
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 1.8e-95 352.8 220 80.9
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 1.8e-95 352.8 220 80.9
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 1.8e-95 352.8 220 80.9
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.8e-95 352.8 221 81.0
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 2.4e-95 352.4 220 81.8
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 3.1e-95 352.1 221 81.4
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 3.1e-95 352.1 221 81.4
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 3.1e-95 352.1 216 82.4
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 4.1e-95 351.7 220 80.5
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 4.1e-95 351.7 218 81.2
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 5.4e-95 351.3 221 81.4
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 7.0e-95 350.9 221 80.5
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 9.2e-95 350.5 220 80.0
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 9.2e-95 350.5 220 80.5
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 9.2e-95 350.5 216 81.5
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 1.2e-94 350.1 220 82.3
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 1.6e-94 349.7 216 81.5
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 2.0e-94 349.4 220 82.3
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 2.0e-94 349.4 215 83.7
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 2.0e-94 349.4 221 80.1
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 2.7e-94 349.0 220 80.0
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 2.7e-94 349.0 217 80.6
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 3.5e-94 348.6 221 80.1
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 4.5e-94 348.2 218 80.3
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 7.7e-94 347.4 220 82.7
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 1.0e-93 347.1 220 78.6
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 1.0e-93 347.1 216 81.9
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 1.3e-93 346.7 216 80.1
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.3e-93 346.7 216 80.1
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.7e-93 346.3 220 79.5
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 1.7e-93 346.3 217 82.0
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 1.7e-93 346.3 217 81.6
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 2.9e-93 345.5 217 81.6
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 3.8e-93 345.1 220 78.6
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 3.8e-93 345.1 220 80.5
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 5.0e-93 344.7 216 79.6
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 8.6e-93 344.0 217 82.0
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 8.6e-93 344.0 220 80.0
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 1.1e-92 343.6 214 82.7
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 3.3e-92 342.0 217 81.6
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 9.5e-92 340.5 217 79.7
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.6e-91 339.7 218 79.8
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 1.6e-91 339.7 217 80.2
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 1.6e-91 339.7 219 80.8
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 8.0e-91 337.4 220 78.2
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 1.4e-90 336.7 225 78.2
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 1.8e-90 336.3 215 81.9
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 1.8e-90 336.3 217 79.3
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 1.8e-90 336.3 223 79.8
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 3.0e-90 335.5 218 78.4
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 3.0e-90 335.5 216 79.6
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 3.0e-90 335.5 216 79.6
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 4.0e-90 335.1 217 79.7
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 4.0e-90 335.1 221 75.6
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 5.2e-90 334.7 218 76.6
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 6.8e-90 334.3 218 76.1
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 1.5e-89 333.2 217 78.3
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 2.6e-89 332.4 214 79.4
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 1.7e-88 329.7 217 78.3
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 3.7e-88 328.6 218 77.5
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 1.7e-85 319.7 219 74.9
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 2.5e-84 315.8 218 77.1
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 1.8e-82 309.7 188 79.3
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 2.0e-81 306.2 165 88.5
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 1.3e-80 303.5 224 74.1
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 1.1e-79 300.4 215 73.5
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 3.5e-78 295.4 193 79.3
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 3.1e-74 282.3 163 82.8
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 2.0e-73 279.6 224 66.5
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 3.2e-71 272.3 165 79.4
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.0e-69 267.3 180 71.1
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.7e-69 266.5 189 70.4
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 2.5e-68 262.7 176 72.2
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 7.3e-68 261.2 171 72.5
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 2.8e-67 259.2 219 66.2
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 2.0e-57 226.5 222 59.9
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 2.2e-56 223.0 218 54.6
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 2.3e-53 213.0 220 57.3
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 2.4e-47 193.0 195 54.9
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 2.7e-46 189.5 127 74.0
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 3.0e-45 186.0 174 55.2
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 4.3e-44 182.2 141 74.5
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 3.1e-42 176.0 150 56.0
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 8.2e-27 124.8 104 69.2
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.4e-15 87.4 74 62.2
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 1.4e-15 87.4 74 62.2
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 3.8e-08 62.8 57 66.7
Potri.015G041900 Populus trichocarpa HOM05D000149 ORTHO05D000076 5.0e-08 62.4 66 54.5
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 8.5e-08 61.6 98 42.9
Aa31LG9G5680 Aethionema arabicum HOM05D001772 ORTHO05D000476 2.1e-06 57.0 56 62.5
Nitab4.5_0007144g0010 Nicotiana tabacum HOM05D005229 ORTHO05D006378 2.7e-06 56.6 58 65.5


User provided reference genes

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