Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 6.7e-196 687.2 353 100.0
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 2.0e-176 622.5 328 97.3
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 1.0e-156 557.0 353 82.4
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 2.0e-155 552.7 353 81.3
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 2.4e-153 545.8 353 81.9
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 1.3e-151 540.0 360 78.9
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 2.8e-149 532.3 357 78.7
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 1.4e-148 530.0 357 78.4
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 1.8e-148 529.6 353 78.5
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.8e-148 529.6 353 77.1
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 2.3e-148 529.3 352 79.8
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 1.7e-146 523.1 353 77.1
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 6.4e-146 521.2 334 82.0
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 2.4e-145 519.2 353 77.6
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 3.2e-145 518.8 353 76.2
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 7.0e-145 517.7 360 76.1
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.2e-144 516.9 353 78.8
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.6e-144 516.5 353 76.5
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 7.8e-144 514.2 357 75.1
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 2.3e-143 512.7 358 75.1
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 6.6e-143 511.1 361 75.9
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 2.5e-142 509.2 362 75.7
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 4.7e-141 505.0 365 74.8
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 8.1e-141 504.2 364 75.0
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 1.4e-140 503.4 359 74.7
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 3.1e-140 502.3 359 74.1
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 5.2e-140 501.5 364 73.6
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 6.8e-140 501.1 359 74.1
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 6.8e-140 501.1 359 73.8
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 8.9e-140 500.7 310 82.3
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 8.9e-140 500.7 356 73.9
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 8.9e-140 500.7 335 78.5
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 2.6e-139 499.2 310 81.9
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 2.6e-139 499.2 363 74.4
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 4.4e-139 498.4 365 73.4
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 1.3e-138 496.9 360 73.1
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 1.7e-138 496.5 311 82.3
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 3.7e-138 495.4 351 74.1
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 6.4e-138 494.6 365 73.7
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 6.4e-138 494.6 358 72.9
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 8.3e-138 494.2 353 74.2
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 3.2e-137 492.3 319 80.9
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 7.8e-136 487.6 345 76.5
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 7.8e-136 487.6 347 74.4
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 1.0e-135 487.3 353 73.9
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 1.7e-135 486.5 356 73.0
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 5.1e-135 485.0 353 74.5
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 6.6e-135 484.6 371 71.2
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 6.6e-135 484.6 320 80.6
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 8.6e-135 484.2 354 72.3
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 1.1e-134 483.8 356 73.0
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 2.5e-134 482.6 344 74.7
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 2.5e-134 482.6 357 72.5
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 2.8e-133 479.2 373 70.8
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 2.8e-133 479.2 320 80.3
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 3.6e-133 478.8 357 72.0
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 2.6e-131 472.6 323 78.3
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 3.4e-131 472.2 349 72.5
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 5.8e-131 471.5 342 72.2
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 1.3e-130 470.3 354 70.6
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 2.9e-130 469.2 332 74.7
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.9e-129 466.5 332 74.4
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 1.9e-129 466.5 354 70.3
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 2.4e-129 466.1 358 70.7
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 2.4e-129 466.1 353 70.0
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 4.1e-129 465.3 354 70.3
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 5.4e-129 464.9 302 79.1
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 1.6e-128 463.4 341 72.7
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 2.1e-128 463.0 319 76.2
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 2.7e-128 462.6 355 71.3
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 7.8e-128 461.1 320 75.6
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 7.8e-128 461.1 320 75.6
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 1.7e-127 459.9 320 75.3
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 2.3e-127 459.5 353 69.1
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 1.5e-126 456.8 320 75.9
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 1.5e-126 456.8 321 75.1
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 1.9e-126 456.4 333 73.0
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 2.5e-126 456.1 355 69.9
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 9.6e-126 454.1 290 81.0
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 1.6e-125 453.4 321 74.8
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 1.6e-125 453.4 304 78.6
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 2.8e-125 452.6 301 79.1
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 1.4e-124 450.3 301 79.1
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 8.9e-124 447.6 364 70.3
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 2.0e-123 446.4 305 76.4
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 4.4e-123 445.3 357 67.5
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 1.7e-122 443.4 364 68.7
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 3.8e-122 442.2 357 65.8
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 4.9e-122 441.8 359 67.7
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 1.9e-121 439.9 354 70.3
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 9.3e-121 437.6 361 64.8
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 9.3e-121 437.6 328 72.0
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 1.2e-120 437.2 288 77.8
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 1.6e-120 436.8 359 67.1
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.3e-119 433.7 357 66.1
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.3e-119 433.7 357 66.1
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 3.9e-119 432.2 357 65.8
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 5.1e-119 431.8 309 74.8
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 1.1e-118 430.6 350 66.6
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 7.3e-118 427.9 357 65.8
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 4.0e-116 422.2 342 66.7
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 1.6e-112 410.2 371 61.5
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 4.6e-112 408.7 364 63.2
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 8.7e-111 404.4 291 72.9
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 1.5e-110 403.7 308 70.1
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 4.3e-110 402.1 308 69.8
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 6.9e-108 394.8 258 77.5
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 9.0e-108 394.4 258 78.3
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 3.8e-106 389.0 354 62.4
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 6.4e-106 388.3 358 62.3
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 1.4e-105 387.1 307 66.1
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 4.2e-105 385.6 357 61.3
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 2.1e-104 383.3 257 76.7
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 3.5e-104 382.5 258 76.7
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 1.0e-103 380.9 258 76.0
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 5.6e-102 375.2 258 73.6
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 2.1e-101 373.2 321 64.8
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 1.8e-100 370.2 271 69.7
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 7.4e-94 348.2 245 73.5
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 1.2e-88 330.9 252 65.5
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 2.5e-86 323.2 313 58.8
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 2.8e-85 319.7 256 62.9
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 2.9e-82 309.7 177 93.8
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 1.2e-75 287.7 279 55.9
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 6.1e-72 275.4 293 58.0
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 1.1e-68 264.6 191 75.9
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 2.5e-65 253.4 191 69.6
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 3.8e-50 203.0 157 68.8
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 1.6e-43 181.0 119 72.3
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 2.0e-43 180.6 103 89.3
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 2.4e-36 157.1 103 80.6
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 2.4e-36 157.1 103 80.6
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 4.6e-35 152.9 131 64.1
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 7.5e-30 135.6 227 42.7
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 1.7e-21 107.8 63 85.7
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 4.9e-21 106.3 211 31.3
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 2.7e-11 73.9 43 74.4


User provided reference genes

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