Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.4e-147 526.2 256 100.0
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.3e-132 476.5 253 90.5
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 1.6e-122 443.0 289 76.5
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 5.1e-121 438.0 258 81.0
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 7.4e-120 434.1 258 80.2
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 3.1e-118 428.7 258 79.1
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 7.7e-117 424.1 260 77.7
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 1.3e-116 423.3 256 79.3
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 3.8e-116 421.8 256 77.7
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 3.8e-116 421.8 263 77.9
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 5.0e-116 421.4 259 77.2
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 6.5e-116 421.0 256 78.5
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 8.5e-116 420.6 255 79.6
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 8.5e-116 420.6 256 77.3
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 3.2e-115 418.7 256 78.1
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.2e-115 418.3 258 76.7
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 3.6e-114 415.2 258 76.7
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.4e-113 413.3 256 77.7
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 2.3e-113 412.5 257 77.0
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.3e-113 412.5 255 77.3
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 3.0e-113 412.1 258 76.4
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 3.0e-113 412.1 256 77.3
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 3.0e-113 412.1 258 75.6
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 3.0e-113 412.1 259 76.8
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 3.9e-113 411.8 258 76.4
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 2.0e-112 409.5 267 74.9
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 4.4e-112 408.3 259 76.8
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 5.7e-112 407.9 260 76.2
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 1.3e-111 406.8 259 75.7
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 1.3e-111 406.8 259 75.7
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 1.7e-111 406.4 256 75.4
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 2.8e-111 405.6 267 74.9
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 3.7e-111 405.2 275 72.4
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 6.3e-111 404.4 251 77.3
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 8.2e-111 404.1 256 75.0
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 1.1e-110 403.7 261 75.1
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.4e-110 403.3 254 74.4
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 1.4e-110 403.3 268 73.5
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 2.4e-110 402.5 256 74.2
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 5.3e-110 401.4 258 76.4
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 5.3e-110 401.4 258 74.4
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 5.3e-110 401.4 256 76.2
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 3.5e-109 398.7 258 76.0
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 3.5e-109 398.7 258 74.0
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 7.7e-109 397.5 256 73.0
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 1.0e-108 397.1 254 72.8
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 1.3e-108 396.7 254 72.8
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 5.0e-108 394.8 258 72.1
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 5.0e-108 394.8 258 72.1
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 5.0e-108 394.8 275 70.5
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 5.0e-108 394.8 267 71.9
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 6.5e-108 394.4 262 74.0
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 1.1e-107 393.7 256 73.0
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 1.5e-107 393.3 265 72.1
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 1.9e-107 392.9 254 73.2
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 1.9e-107 392.9 254 73.2
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 2.5e-107 392.5 256 73.0
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 3.2e-107 392.1 260 73.5
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 5.5e-107 391.3 252 72.6
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 7.2e-107 391.0 254 72.8
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 7.2e-107 391.0 256 72.3
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 9.4e-107 390.6 254 72.8
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 2.1e-106 389.4 254 72.0
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 2.1e-106 389.4 254 70.9
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 2.7e-106 389.0 254 72.4
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.7e-106 389.0 253 71.5
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 3.6e-106 388.7 253 71.9
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.6e-106 388.7 253 71.9
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 4.7e-106 388.3 257 72.0
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 6.1e-106 387.9 254 71.7
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 6.1e-106 387.9 269 70.3
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 6.1e-106 387.9 256 72.3
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 3.0e-105 385.6 257 72.0
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 3.0e-105 385.6 258 72.5
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 3.0e-105 385.6 256 71.1
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 6.7e-105 384.4 255 71.8
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 8.8e-105 384.0 254 71.3
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 1.5e-104 383.3 257 70.8
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 2.6e-104 382.5 256 70.7
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 5.7e-104 381.3 260 70.8
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 7.5e-104 380.9 264 69.7
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 9.7e-104 380.6 256 71.5
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 9.7e-104 380.6 256 70.7
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 1.3e-103 380.2 262 71.0
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 1.3e-103 380.2 214 83.6
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 4.8e-103 378.3 262 71.8
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 2.4e-102 375.9 253 69.2
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 2.4e-102 375.9 256 69.9
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 2.4e-102 375.9 250 70.0
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 7.0e-102 374.4 257 68.5
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 1.2e-101 373.6 234 79.5
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 4.5e-101 371.7 256 71.1
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 1.0e-100 370.5 257 70.0
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 2.9e-100 369.0 262 69.5
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 1.1e-99 367.1 252 70.6
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 1.2e-98 363.6 258 67.8
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 1.6e-98 363.2 259 67.2
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 6.1e-98 361.3 316 59.2
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 6.1e-98 361.3 254 67.7
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 1.0e-97 360.5 254 66.1
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 1.0e-97 360.5 256 68.8
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 2.3e-97 359.4 254 65.7
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 4.0e-97 358.6 308 64.6
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 5.2e-97 358.2 258 68.6
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 6.8e-97 357.8 256 68.0
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 2.0e-96 356.3 269 63.2
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.0e-96 356.3 258 66.3
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 2.8e-95 352.4 211 78.7
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 2.4e-94 349.4 213 76.1
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 4.1e-94 348.6 258 67.8
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 2.7e-93 345.9 256 66.8
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 3.5e-93 345.5 236 72.9
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 3.5e-93 345.5 256 67.2
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 6.6e-92 341.3 258 62.8
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 2.5e-91 339.3 211 76.8
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 7.2e-91 337.8 197 81.2
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 3.6e-90 335.5 195 81.5
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 2.0e-88 329.7 273 58.6
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 5.7e-88 328.2 211 72.0
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 2.4e-86 322.8 243 64.6
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.0e-85 319.7 197 76.6
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 2.7e-85 319.3 213 71.4
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 5.6e-83 311.6 191 75.9
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 1.0e-81 307.4 191 79.1
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 1.8e-81 306.6 254 60.6
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 3.0e-81 305.8 185 80.0
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 4.4e-80 302.0 241 58.1
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 5.8e-80 301.6 201 72.1
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 7.5e-80 301.2 236 58.1
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 4.6e-77 292.0 227 64.8
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 1.7e-76 290.0 170 82.9
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 2.1e-74 283.1 251 54.2
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.1e-69 266.5 360 45.6
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 1.7e-68 263.5 259 50.6
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 2.0e-64 250.0 182 65.9
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.7e-61 239.6 273 50.5
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 9.5e-59 231.1 206 55.3
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.6e-58 230.3 242 49.6
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 5.8e-56 221.9 209 56.5
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 8.7e-52 208.0 179 55.3
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 2.8e-50 203.0 134 67.9
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 6.2e-50 201.8 124 75.0
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 1.3e-47 194.1 147 62.6
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 6.4e-47 191.8 178 52.8
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.4e-46 189.9 126 70.6
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 9.0e-41 171.4 276 34.4
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 5.1e-36 155.6 318 34.0
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 5.1e-36 155.6 203 41.9
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.7e-34 149.4 103 71.8
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 2.4e-33 146.7 98 69.4
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.3e-31 141.0 124 57.3
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 1.7e-31 140.6 175 49.1
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 6.0e-29 132.1 272 33.5
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 7.9e-29 131.7 165 43.0
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 4.8e-26 122.5 100 57.0
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 1.7e-23 114.0 78 66.7
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 2.3e-20 103.6 60 81.7
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.9e-20 102.8 124 41.1
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.8e-17 94.0 83 57.8
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 3.4e-16 89.7 55 81.8
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 3.4e-16 89.7 55 81.8
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 9.4e-14 81.6 55 69.1
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 8.2e-10 68.6 47 66.0
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 1.8e-09 67.4 57 52.6
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 1.8e-09 67.4 44 63.6
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 1.8e-09 67.4 44 63.6
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 3.8e-07 59.7 37 78.4
Duzib133G1297 Durio zibethinus HOM05D004412 ORTHO05D005316 5.0e-07 59.3 34 70.6
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.1e-06 58.2 56 46.4
FAN05G3835 Fragaria x ananassa HOM05D025046 ORTHO05D205720 1.4e-06 57.8 51 54.9


User provided reference genes

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