Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 0.0e+00 1634.4 901 100.0
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 0.0e+00 1430.6 901 89.6
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 0.0e+00 1385.5 901 83.9
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 2.0e-305 1052.4 909 66.7
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 1.5e-287 993.0 902 61.2
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 3.0e-285 985.3 920 62.2
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 2.2e-283 979.2 908 61.0
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 1.4e-282 976.5 915 61.7
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 7.5e-276 954.1 921 60.8
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.0e-272 943.7 932 59.5
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 1.0e-272 943.7 909 60.9
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 2.3e-272 942.6 918 59.4
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 3.3e-271 938.7 938 58.6
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 4.7e-270 934.9 918 59.2
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 1.5e-268 929.9 934 60.0
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 5.4e-266 921.4 876 61.1
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 7.0e-266 921.0 933 58.4
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 6.0e-265 917.9 906 59.3
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 2.3e-264 916.0 877 60.7
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.9e-263 912.9 926 58.1
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 6.2e-262 907.9 902 57.5
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 4.4e-260 901.7 916 59.0
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.2e-259 899.4 905 59.1
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 5.1e-256 888.3 905 58.8
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 5.6e-255 884.8 905 58.5
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 2.4e-250 869.4 908 57.0
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 2.1e-249 866.3 899 56.8
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 2.7e-249 865.9 946 54.2
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 1.3e-248 863.6 894 56.8
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 5.1e-248 861.7 907 55.3
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 6.6e-248 861.3 923 54.7
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 4.3e-247 858.6 893 56.8
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 7.3e-247 857.8 909 55.9
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 2.8e-246 855.9 912 56.1
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 3.6e-246 855.5 918 56.5
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 6.2e-246 854.7 908 56.5
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 8.1e-246 854.4 943 55.8
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 7.6e-244 847.8 864 57.3
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 9.9e-244 847.4 902 56.0
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 9.9e-244 847.4 902 57.0
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 2.9e-243 845.9 920 54.9
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 3.8e-243 845.5 868 57.1
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 4.6e-241 838.6 903 55.6
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 1.7e-240 836.6 886 56.2
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 2.5e-239 832.8 906 54.1
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 5.6e-239 831.6 905 54.5
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 1.1e-237 827.4 905 54.7
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 1.4e-237 827.0 921 53.4
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 3.1e-237 825.9 904 54.1
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 4.0e-237 825.5 905 54.5
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 4.0e-237 825.5 908 53.7
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 9.0e-237 824.3 847 56.7
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 9.9e-236 820.8 889 54.4
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 7.1e-234 814.7 924 52.7
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 4.6e-233 812.0 895 53.7
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 4.3e-231 805.4 905 52.6
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 6.9e-229 798.1 886 54.4
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 1.2e-228 797.3 905 53.7
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 1.2e-228 797.3 926 52.4
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.5e-228 797.0 905 53.6
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 1.5e-228 797.0 914 52.8
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 2.6e-228 796.2 904 53.7
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 9.9e-228 794.3 905 53.3
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 6.4e-227 791.6 879 54.0
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.1e-226 790.8 867 55.1
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 2.5e-226 789.6 871 52.8
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 4.2e-226 788.9 909 53.1
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 2.1e-225 786.6 908 51.7
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 6.7e-224 781.6 907 52.4
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.5e-223 779.6 905 52.8
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 4.3e-223 778.9 802 57.1
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.3e-222 777.3 931 52.2
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 1.6e-222 776.9 823 54.1
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 3.1e-221 772.7 896 52.1
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 9.0e-221 771.2 917 51.6
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 9.0e-221 771.2 919 51.6
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 9.3e-218 761.1 727 58.3
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 1.2e-217 760.8 878 50.9
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 2.1e-217 760.0 870 53.6
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 7.9e-217 758.1 905 50.5
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 1.4e-213 747.3 827 53.6
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 1.1e-210 737.6 848 53.8
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 4.2e-210 735.7 890 51.2
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 3.9e-208 729.2 881 48.6
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 6.7e-208 728.4 890 49.4
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 2.0e-207 726.9 878 49.5
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 2.5e-207 726.5 869 52.4
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 2.2e-206 723.4 929 49.1
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 2.8e-206 723.0 900 49.3
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 5.9e-204 715.3 888 48.3
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 5.9e-204 715.3 893 48.8
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 5.5e-202 708.8 873 50.2
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 4.7e-201 705.7 877 48.3
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 1.3e-198 697.6 886 47.6
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 1.9e-194 683.7 902 47.6
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 2.5e-194 683.3 894 46.9
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 9.4e-194 681.4 905 46.1
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 2.1e-193 680.2 886 47.1
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 4.7e-193 679.1 882 47.6
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 2.3e-192 676.8 909 47.9
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 1.5e-191 674.1 909 46.0
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 3.3e-191 672.9 889 46.0
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 3.3e-191 672.9 897 46.3
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 4.4e-191 672.5 857 47.5
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 2.0e-188 663.7 821 49.3
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 5.9e-188 662.1 868 46.3
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 9.7e-183 644.8 919 44.5
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 2.2e-182 643.7 883 45.5
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 1.2e-180 637.9 735 52.4
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 1.5e-175 620.9 559 62.4
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 5.7e-175 619.0 656 58.1
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 1.7e-174 617.5 857 45.9
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 7.5e-167 592.0 886 45.4
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 1.6e-164 584.3 667 54.0
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 7.8e-164 582.0 882 43.5
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 2.3e-163 580.5 610 54.6
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 1.9e-162 577.4 894 44.4
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 3.0e-147 526.9 1044 38.7
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 2.6e-135 487.3 847 41.1
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 4.0e-128 463.4 401 65.8
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 2.5e-122 444.1 791 40.3
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 9.0e-120 435.6 903 36.5
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 2.0e-119 434.5 451 55.0
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 8.4e-118 429.1 1051 32.6
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 1.9e-106 391.3 452 52.2
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 3.8e-102 377.1 949 35.2
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 6.7e-99 366.3 976 33.2
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 2.5e-93 347.8 353 56.7
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 2.7e-92 344.4 859 32.7
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 4.6e-92 343.6 334 58.1
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.3e-89 335.5 247 69.6
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 6.3e-89 333.2 897 33.1
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 6.3e-89 333.2 897 33.1
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 7.7e-87 326.2 283 61.5
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 8.0e-76 289.7 234 64.1
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 4.0e-75 287.3 1212 26.7
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 1.6e-68 265.4 196 66.8
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 7.0e-64 250.0 755 32.7
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 9.4e-61 239.6 323 46.7
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 9.4e-61 239.6 847 28.2
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 7.0e-56 223.4 407 39.1
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 1.3e-54 219.2 451 36.1
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 6.6e-54 216.9 422 38.9
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 8.6e-54 216.5 404 38.1
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 9.5e-53 213.0 404 37.9
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.6e-50 204.9 324 43.8
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 7.5e-50 203.4 365 38.6
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 2.9e-49 201.4 400 37.5
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 1.0e-43 183.0 363 36.9
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.8e-43 182.2 153 59.5
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.6e-42 178.3 176 62.5
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 4.4e-42 177.6 164 57.9
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 6.4e-41 173.7 178 55.1
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.7e-39 168.3 674 28.0
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 4.6e-39 167.5 206 47.6
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 3.1e-35 154.8 310 38.1
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 8.9e-35 153.3 224 42.0
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 2.6e-34 151.8 1186 23.6
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 4.4e-34 151.0 301 35.9
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 1.7e-33 149.1 211 44.5
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 1.6e-31 142.5 131 55.0
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 1.5e-29 136.0 163 49.1
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.4e-26 124.8 129 54.3
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 5.8e-26 124.0 828 24.3
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 1.1e-24 119.8 311 32.8
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 2.4e-24 118.6 310 32.3
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.4e-24 118.6 122 63.9
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 2.8e-20 105.1 273 32.2
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 1.1e-19 103.2 273 31.5
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 1.9e-13 82.4 175 32.6
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 6.2e-12 77.4 293 28.7
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.8e-11 75.9 209 34.9
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 1.3e-09 69.7 55 60.0
MBI19_g43566_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D244402 9.3e-08 63.5 110 46.4
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 4.6e-07 61.2 81 42.0
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 6.0e-07 60.8 183 30.1


User provided reference genes

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