Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 8.5e-219 763.5 406 100.0
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 2.6e-175 619.0 433 78.8
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 4.4e-175 618.2 406 82.0
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 1.6e-132 476.9 410 64.4
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 5.3e-128 461.8 406 65.5
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 9.6e-122 441.0 406 61.8
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 4.5e-119 432.2 415 60.2
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 5.8e-119 431.8 407 60.4
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 8.4e-118 427.9 411 58.6
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 9.7e-114 414.5 407 57.0
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 2.4e-112 409.8 407 56.3
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 2.6e-111 406.4 378 61.4
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 1.4e-107 394.0 410 56.3
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 1.5e-106 390.6 408 56.1
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 2.0e-106 390.2 382 57.9
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 1.1e-104 384.4 467 51.4
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 9.1e-104 381.3 371 56.6
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 2.9e-102 376.3 467 51.2
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.8e-102 375.9 467 51.0
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 3.2e-101 372.9 406 55.2
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 3.0e-99 366.3 415 53.7
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 4.8e-97 359.0 420 52.4
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 6.3e-97 358.6 405 52.8
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.1e-96 357.8 459 50.3
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.4e-96 356.7 458 50.2
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 2.0e-95 353.6 413 51.6
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 5.9e-95 352.1 336 59.2
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.0e-94 351.3 458 50.0
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 2.2e-94 350.1 413 52.1
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 1.0e-91 341.3 407 50.4
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 3.0e-91 339.7 380 52.1
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 4.4e-90 335.9 390 52.1
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 2.8e-89 333.2 418 51.2
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 4.8e-89 332.4 419 49.9
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 1.6e-87 327.4 420 51.0
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 2.1e-84 317.0 345 53.3
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 6.1e-84 315.5 428 47.4
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 1.8e-83 313.9 441 46.3
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 2.3e-83 313.5 437 47.4
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 4.4e-82 309.3 426 48.6
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 5.7e-82 308.9 406 49.3
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 2.2e-81 307.0 417 47.5
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 2.8e-81 306.6 456 45.2
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 3.1e-80 303.1 286 60.1
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 3.1e-80 303.1 410 49.5
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 5.3e-80 302.4 462 47.0
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 4.5e-79 299.3 463 45.6
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 4.5e-79 299.3 417 47.5
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 3.2e-77 293.1 406 45.3
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 3.2e-77 293.1 398 46.5
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 4.2e-77 292.7 385 45.7
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.6e-76 290.8 311 56.6
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 1.4e-75 287.7 420 46.0
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 2.6e-74 283.5 414 44.9
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 7.5e-74 282.0 460 44.3
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 4.8e-73 279.3 254 64.2
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 4.8e-73 279.3 457 41.4
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 1.1e-72 278.1 379 46.4
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 2.0e-71 273.9 431 45.0
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 2.7e-71 273.5 409 44.0
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 7.7e-71 271.9 472 40.9
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 1.3e-70 271.2 457 40.5
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 1.7e-70 270.8 370 47.3
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 3.8e-70 269.6 399 45.6
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.1e-69 268.1 334 50.3
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 2.5e-69 266.9 425 43.3
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 4.2e-69 266.2 416 42.5
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 7.2e-69 265.4 466 40.8
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 2.1e-68 263.8 385 46.2
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 1.8e-67 260.8 464 40.3
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 6.8e-67 258.8 412 44.9
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 2.6e-66 256.9 419 41.3
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 2.6e-66 256.9 381 45.7
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 5.7e-66 255.8 405 44.9
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 9.8e-66 255.0 428 41.4
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 2.8e-65 253.4 258 53.9
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 3.1e-64 250.0 444 39.4
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 3.5e-63 246.5 442 40.0
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 5.9e-63 245.7 234 59.8
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.3e-62 243.8 212 67.5
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.3e-62 243.8 282 55.0
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 5.0e-62 242.7 394 40.4
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 5.6e-61 239.2 373 42.1
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 2.1e-60 237.3 262 53.4
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 4.7e-60 236.1 400 41.5
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 6.1e-60 235.7 346 46.0
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 8.0e-60 235.3 434 41.7
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 3.1e-59 233.4 259 51.0
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 3.1e-59 233.4 437 40.5
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 5.2e-59 232.6 408 40.4
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 2.9e-57 226.9 417 41.7
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 8.3e-57 225.3 434 40.1
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 3.2e-56 223.4 421 37.8
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 4.6e-55 219.5 416 38.5
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 7.8e-55 218.8 234 57.3
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 1.0e-54 218.4 421 40.4
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 3.0e-54 216.9 356 41.0
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 1.1e-53 214.9 380 40.5
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.6e-52 209.9 290 48.6
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 1.8e-51 207.6 464 37.3
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 2.3e-51 207.2 460 37.4
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 1.5e-50 204.5 444 36.7
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 2.0e-50 204.1 275 49.5
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 1.2e-47 194.9 263 50.6
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 1.6e-47 194.5 255 49.8
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 5.2e-43 179.5 325 37.2
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 1.2e-42 178.3 194 54.1
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 2.2e-41 174.1 426 36.6
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 7.3e-37 159.1 326 35.6
Sabra02G0127100 Salix brachista HOM05D005648 ORTHO05D007357 1.2e-36 158.3 163 59.5
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 8.9e-35 152.1 142 62.0
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 1.7e-30 137.9 297 36.7
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 1.1e-29 135.2 292 37.7
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 4.8e-28 129.8 115 60.0
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.0e-26 124.4 257 37.7
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 1.3e-25 121.7 408 32.4
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 5.4e-24 116.3 493 27.8
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 1.6e-23 114.8 333 32.7
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.0e-22 110.5 134 51.5
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 3.3e-21 107.1 93 57.0
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 2.8e-20 104.0 109 48.6
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 2.8e-20 104.0 100 60.0
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.5e-18 98.2 80 71.2
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 9.9e-18 95.5 141 46.1
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.1e-16 92.0 72 76.4
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 4.2e-16 90.1 76 57.9
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 1.2e-15 88.6 80 67.5
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 6.0e-15 86.3 74 56.8
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.9e-13 81.3 69 50.7
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 1.3e-12 78.6 64 62.5
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.6e-12 78.2 70 54.3
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 4.8e-12 76.6 98 43.9
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 8.1e-12 75.9 126 37.3
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 1.1e-11 75.5 127 38.6
Eucgr.D02395 Eucalyptus grandis HOM05D005648 ORTHO05D029324 4.6e-07 60.1 96 37.5
Eucgr.D02408 Eucalyptus grandis HOM05D005648 ORTHO05D029324 6.7e-06 56.2 81 39.5


User provided reference genes

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