Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 5.5e-78 294.3 152 100.0
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 1.9e-62 242.7 152 80.3
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 7.9e-61 237.3 152 78.9
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 1.1e-59 233.4 154 77.3
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 7.4e-59 230.7 152 77.6
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 9.7e-59 230.3 152 77.6
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 9.7e-59 230.3 152 77.6
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 6.3e-58 227.6 154 76.6
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 1.1e-57 226.9 150 75.3
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 5.3e-57 224.6 154 76.0
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 2.0e-56 222.6 139 79.1
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 3.4e-56 221.9 154 74.7
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.7e-55 219.5 162 72.2
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 2.2e-55 219.2 157 74.5
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.9e-54 216.1 164 72.0
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 2.5e-54 215.7 153 71.2
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 5.5e-54 214.5 144 74.3
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 5.5e-54 214.5 134 79.9
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 5.5e-54 214.5 156 74.4
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 2.1e-53 212.6 152 71.1
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 2.1e-53 212.6 157 75.2
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 2.1e-53 212.6 155 71.0
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 2.7e-53 212.2 121 85.1
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 2.7e-53 212.2 152 71.1
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 3.6e-53 211.8 157 71.3
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 3.6e-53 211.8 150 71.3
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 3.6e-53 211.8 121 87.6
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 4.6e-53 211.5 146 71.9
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 6.1e-53 211.1 152 71.1
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 1.0e-52 210.3 158 71.5
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 1.4e-52 209.9 142 73.9
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 1.4e-52 209.9 154 70.8
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 1.4e-52 209.9 153 72.5
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 1.8e-52 209.5 146 71.9
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 3.9e-52 208.4 146 71.2
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 3.9e-52 208.4 158 70.3
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 5.1e-52 208.0 152 70.4
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 5.1e-52 208.0 121 84.3
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 6.7e-52 207.6 152 72.4
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 6.7e-52 207.6 153 71.2
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 6.7e-52 207.6 160 68.1
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 1.1e-51 206.8 152 71.7
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 1.5e-51 206.5 153 71.2
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 1.5e-51 206.5 153 71.2
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 2.0e-51 206.1 160 68.8
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 2.0e-51 206.1 120 83.3
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 2.6e-51 205.7 119 81.5
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 2.6e-51 205.7 152 71.1
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 2.6e-51 205.7 154 68.2
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 3.3e-51 205.3 155 71.0
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 3.3e-51 205.3 153 68.0
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 4.4e-51 204.9 155 67.7
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 4.4e-51 204.9 153 69.3
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 5.7e-51 204.5 155 67.1
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 5.7e-51 204.5 153 70.6
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 7.4e-51 204.1 160 68.8
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 9.7e-51 203.8 152 70.4
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 1.7e-50 203.0 154 69.5
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 1.7e-50 203.0 156 69.2
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 2.2e-50 202.6 152 71.1
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 2.2e-50 202.6 152 71.7
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 3.7e-50 201.8 122 81.1
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 3.7e-50 201.8 154 66.9
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 6.3e-50 201.1 121 81.8
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 8.2e-50 200.7 121 81.8
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 8.2e-50 200.7 122 78.7
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 8.2e-50 200.7 153 67.3
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 1.1e-49 200.3 155 67.7
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 1.4e-49 199.9 154 66.2
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 2.4e-49 199.1 129 74.4
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 2.4e-49 199.1 119 81.5
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.9e-49 197.6 129 73.6
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 1.2e-48 196.8 155 67.7
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 1.2e-48 196.8 121 77.7
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.5e-48 196.4 120 78.3
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 2.0e-48 196.1 138 71.7
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 2.0e-48 196.1 121 76.9
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 2.6e-48 195.7 155 67.1
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 2.6e-48 195.7 159 66.0
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 3.4e-48 195.3 172 62.8
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 3.4e-48 195.3 154 69.5
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.5e-48 194.9 156 67.3
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 4.5e-48 194.9 152 67.1
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 5.9e-48 194.5 153 66.7
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 5.9e-48 194.5 187 58.3
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 5.9e-48 194.5 141 70.2
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 7.7e-48 194.1 120 81.7
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 1.3e-47 193.4 122 75.4
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 2.2e-47 192.6 155 66.5
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 2.9e-47 192.2 153 66.7
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.0e-47 191.4 144 67.4
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.1e-46 190.3 122 75.4
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.4e-46 189.9 142 69.7
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.4e-46 189.9 155 66.5
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.9e-46 189.5 118 79.7
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 2.5e-46 189.1 144 66.0
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 3.2e-46 188.7 156 66.0
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 4.2e-46 188.3 155 66.5
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 4.2e-46 188.3 155 66.5
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 4.2e-46 188.3 155 66.5
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 5.5e-46 188.0 116 81.0
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 5.5e-46 188.0 157 63.7
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 9.4e-46 187.2 119 76.5
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 9.4e-46 187.2 120 76.7
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.6e-45 186.4 152 64.5
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 2.1e-45 186.0 120 75.8
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.1e-45 186.0 150 64.7
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 2.7e-45 185.7 168 63.1
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 3.6e-45 185.3 123 76.4
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 4.7e-45 184.9 132 72.0
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 7.9e-45 184.1 115 80.0
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 2.3e-44 182.6 147 66.0
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 3.0e-44 182.2 119 74.8
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 5.2e-44 181.4 121 75.2
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 5.2e-44 181.4 123 72.4
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 8.8e-44 180.6 144 66.0
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 4.4e-43 178.3 112 77.7
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 1.7e-42 176.4 177 57.1
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 2.2e-42 176.0 111 77.5
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 5.3e-41 171.4 155 62.6
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 5.3e-41 171.4 153 61.4
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 7.0e-41 171.0 120 70.8
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 7.0e-41 171.0 111 76.6
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.2e-40 170.2 106 76.4
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.2e-40 170.2 106 76.4
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.6e-40 169.9 106 80.2
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 2.0e-40 169.5 105 81.0
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 5.9e-40 167.9 120 69.2
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 1.0e-39 167.2 113 74.3
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.7e-39 166.4 150 63.3
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 2.9e-39 165.6 104 78.8
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 1.1e-38 163.7 104 76.9
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 3.2e-38 162.2 155 57.4
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 9.4e-38 160.6 121 71.9
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 9.4e-38 160.6 104 78.8
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 8.0e-37 157.5 107 75.7
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.0e-36 157.1 105 71.4
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.0e-36 155.6 129 62.0
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.0e-36 155.6 129 62.0
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 8.8e-36 154.1 122 66.4
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 8.8e-36 154.1 127 64.6
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 1.2e-35 153.7 120 64.2
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.0e-35 152.9 120 65.0
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 5.7e-35 151.4 127 62.2
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 8.2e-34 147.5 120 66.7
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 2.9e-31 139.0 95 72.6
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 1.5e-27 126.7 107 62.6
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 5.7e-27 124.8 133 52.6
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 1.1e-25 120.6 76 81.6
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 3.5e-24 115.5 119 48.7
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 2.9e-23 112.5 58 89.7
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 6.1e-21 104.8 100 57.0
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 1.8e-20 103.2 53 86.8
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 4.0e-20 102.1 77 68.8
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 1.2e-19 100.5 100 56.0
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 1.2e-19 100.5 82 65.9
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 1.2e-19 100.5 60 81.7
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 2.6e-19 99.4 74 71.6
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 3.4e-19 99.0 77 67.5
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 9.8e-19 97.4 77 66.2
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 5.0e-15 85.1 47 83.0
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 2.1e-13 79.7 134 37.3
Sabra14G0052800 Salix brachista HOM05D000186 ORTHO05D001124 1.7e-10 70.1 146 38.4
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 6.4e-10 68.2 134 35.8
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 3.2e-09 65.9 145 31.0
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 4.6e-08 62.0 39 71.8


User provided reference genes

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