Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 3.0e-84 315.1 153 100.0
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 2.8e-82 308.5 153 98.0
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 2.9e-79 298.5 151 95.4
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 6.5e-79 297.4 151 95.4
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 8.5e-79 297.0 151 95.4
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 8.5e-79 297.0 151 94.7
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 1.1e-78 296.6 151 94.0
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.4e-78 296.2 151 94.7
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.4e-78 296.2 151 94.7
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 1.9e-78 295.8 153 92.8
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 3.2e-78 295.0 151 93.4
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.2e-78 294.7 153 94.1
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.2e-78 294.7 153 94.1
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 4.2e-78 294.7 151 94.0
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 4.2e-78 294.7 151 94.0
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 4.2e-78 294.7 151 94.0
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 4.2e-78 294.7 151 94.0
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 7.2e-78 293.9 151 93.4
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 1.6e-77 292.7 147 95.9
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.6e-77 292.7 147 95.9
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 2.1e-77 292.4 153 92.2
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 2.1e-77 292.4 147 94.6
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 2.1e-77 292.4 151 94.7
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 2.1e-77 292.4 151 94.7
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 2.7e-77 292.0 150 93.3
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 91.4
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 3.6e-77 291.6 147 95.2
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 3.6e-77 291.6 151 92.7
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 3.6e-77 291.6 151 92.7
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 6.1e-77 290.8 151 90.7
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 6.1e-77 290.8 150 92.7
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 6.1e-77 290.8 150 92.7
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 6.1e-77 290.8 151 92.7
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 1.0e-76 290.0 150 92.7
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 1.0e-76 290.0 147 94.6
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.0e-76 290.0 147 93.2
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 1.4e-76 289.7 147 93.9
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 1.4e-76 289.7 150 92.7
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.8e-76 289.3 149 91.3
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 1.8e-76 289.3 147 93.9
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.8e-76 289.3 147 93.2
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 1.8e-76 289.3 151 92.1
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 3.0e-76 288.5 153 91.5
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 3.0e-76 288.5 150 92.0
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 3.0e-76 288.5 150 92.0
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 3.0e-76 288.5 150 92.0
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 3.9e-76 288.1 151 92.7
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 3.9e-76 288.1 151 92.7
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 3.9e-76 288.1 152 91.4
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 3.9e-76 288.1 152 91.4
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 5.1e-76 287.7 147 92.5
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 5.1e-76 287.7 151 92.7
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 6.7e-76 287.3 151 92.7
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 6.7e-76 287.3 153 90.2
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 6.7e-76 287.3 151 92.1
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 8.8e-76 287.0 153 92.8
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 8.8e-76 287.0 147 92.5
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 1.1e-75 286.6 150 91.3
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 1.1e-75 286.6 145 93.8
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 1.1e-75 286.6 145 93.8
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 1.1e-75 286.6 145 93.8
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 1.1e-75 286.6 153 89.5
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.5e-75 286.2 150 91.3
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.0e-75 285.8 153 92.8
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 2.0e-75 285.8 151 90.1
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 2.0e-75 285.8 153 91.5
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 2.5e-75 285.4 148 91.9
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 2.5e-75 285.4 150 90.7
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 2.5e-75 285.4 147 91.8
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 2.5e-75 285.4 147 91.8
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 3.3e-75 285.0 151 90.7
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 3.3e-75 285.0 147 93.2
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 3.3e-75 285.0 147 93.2
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 4.3e-75 284.6 149 92.6
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 5.7e-75 284.3 149 90.6
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 7.4e-75 283.9 151 90.1
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.3e-74 283.1 151 90.7
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.3e-74 283.1 151 88.7
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.3e-74 283.1 151 88.7
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.3e-74 283.1 151 88.7
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.3e-74 283.1 151 88.7
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.3e-74 283.1 151 88.7
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 1.3e-74 283.1 151 88.7
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 1.3e-74 283.1 147 89.8
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 1.7e-74 282.7 153 90.8
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 1.7e-74 282.7 153 90.8
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.7e-74 282.7 154 88.3
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 1.7e-74 282.7 149 90.6
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 2.2e-74 282.3 144 93.1
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.8e-74 282.0 151 88.1
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 6.3e-74 280.8 153 89.5
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 1.1e-73 280.0 159 84.9
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 1.4e-73 279.6 153 89.5
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.8e-73 279.3 145 91.0
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 2.4e-73 278.9 144 91.7
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 4.1e-73 278.1 147 89.8
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 4.1e-73 278.1 147 91.2
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 4.1e-73 278.1 147 91.2
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 5.3e-73 277.7 153 88.9
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 1.5e-72 276.2 147 91.2
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 1.5e-72 276.2 153 87.6
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 2.6e-72 275.4 144 92.4
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 2.6e-72 275.4 144 92.4
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 3.4e-72 275.0 145 89.7
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 3.4e-72 275.0 156 85.3
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 7.7e-72 273.9 151 88.1
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 2.2e-71 272.3 144 91.0
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 2.9e-71 271.9 143 90.9
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 2.9e-71 271.9 143 90.9
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.4e-70 269.6 144 88.9
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 4.2e-70 268.1 152 87.5
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 4.2e-70 268.1 148 88.5
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 5.5e-70 267.7 134 95.5
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 2.1e-69 265.8 140 90.0
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 1.0e-68 263.5 143 88.1
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 9.7e-67 256.9 140 89.3
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 1.3e-66 256.5 133 91.0
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 1.3e-66 256.5 133 91.0
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 2.8e-66 255.4 127 95.3
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 4.8e-66 254.6 127 95.3
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 8.2e-66 253.8 133 89.5
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 1.1e-65 253.4 132 93.2
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 4.1e-65 251.5 155 81.3
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 9.1e-65 250.4 133 91.7
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 9.1e-65 250.4 129 90.7
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 9.1e-65 250.4 130 90.0
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.2e-64 250.0 127 91.3
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.0e-64 249.2 148 84.5
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.0e-64 249.2 129 90.7
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 2.0e-64 249.2 133 88.7
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.6e-64 248.8 133 91.7
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 2.6e-64 248.8 155 80.6
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 4.5e-64 248.1 125 92.8
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 5.9e-64 247.7 140 85.7
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 5.9e-64 247.7 127 91.3
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 1.0e-63 246.9 145 80.7
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 1.0e-63 246.9 137 86.1
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 1.7e-63 246.1 133 88.7
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 2.2e-63 245.7 127 91.3
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 3.8e-63 245.0 127 89.8
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 8.5e-63 243.8 147 83.0
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 4.7e-61 238.0 139 82.7
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 1.7e-58 229.6 143 70.6
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 2.2e-58 229.2 144 70.8
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 4.8e-58 228.0 149 71.8
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 1.0e-55 220.3 155 71.6
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 4.0e-52 208.4 180 61.7
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.0e-51 206.1 148 70.9
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 2.6e-51 205.7 116 85.3
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 6.3e-50 201.1 125 76.0
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 1.2e-48 196.8 103 92.2
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 2.0e-48 196.1 103 91.3
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 2.0e-48 196.1 103 92.2
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 1.2e-45 186.8 114 74.6
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 8.8e-44 180.6 87 97.7
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 1.4e-41 173.3 115 80.9
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 4.3e-38 161.8 78 94.9
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 8.0e-37 157.5 79 89.9
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 6.8e-36 154.5 81 91.4
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 2.6e-35 152.5 148 58.8
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.7e-32 142.5 73 94.5
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 5.6e-30 134.8 73 83.6
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 8.9e-28 127.5 71 88.7
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 3.4e-27 125.6 83 77.1
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 7.5e-27 124.4 71 87.3
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 3.7e-26 122.1 71 85.9
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 1.7e-15 86.7 45 93.3
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 4.3e-14 82.0 46 84.8
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 5.2e-12 75.1 74 52.7


User provided reference genes

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