Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 5.2e-243 844.0 428 100.0
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 2.8e-140 502.7 642 51.2
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 2.0e-138 496.5 643 50.5
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 1.6e-122 443.7 648 45.2
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 4.9e-116 422.2 660 43.3
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 1.7e-113 413.7 652 42.9
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 3.0e-113 412.9 654 42.7
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.5e-112 410.6 651 42.7
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 1.9e-112 410.2 651 42.9
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 1.6e-111 407.1 652 42.9
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 3.6e-111 406.0 653 43.0
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 2.3e-110 403.3 658 42.6
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 6.8e-110 401.7 659 42.2
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 6.4e-108 395.2 660 42.3
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 1.1e-107 394.4 657 41.7
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 1.4e-107 394.0 633 43.3
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 2.4e-107 393.3 652 41.6
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 2.4e-107 393.3 660 42.1
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 3.2e-107 392.9 655 41.1
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 9.2e-107 391.3 399 57.6
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 2.7e-106 389.8 653 41.7
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 6.0e-106 388.7 662 41.4
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 2.5e-104 383.3 660 41.5
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 1.2e-103 380.9 655 41.1
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 4.7e-103 379.0 652 40.8
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 6.2e-103 378.6 655 41.2
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.4e-102 377.5 666 39.8
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.4e-102 376.7 652 40.8
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 3.1e-102 376.3 658 40.4
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 5.2e-102 375.6 651 41.0
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 6.8e-102 375.2 652 40.5
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 2.6e-101 373.2 675 39.7
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 4.4e-101 372.5 652 40.5
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 9.9e-101 371.3 661 39.8
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 6.4e-100 368.6 653 39.8
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 1.2e-98 364.4 647 39.3
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 1.2e-98 364.4 629 41.2
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 1.2e-98 364.4 665 38.9
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 1.6e-98 364.0 647 40.0
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.1e-98 363.6 701 38.2
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 2.7e-98 363.2 653 39.1
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 4.6e-98 362.5 650 39.2
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 3.0e-97 359.8 661 39.8
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 5.1e-97 359.0 653 39.8
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 4.3e-96 355.9 639 40.2
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 5.6e-96 355.5 429 53.1
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 9.6e-96 354.8 661 39.5
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.3e-95 354.4 660 39.2
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 2.8e-95 353.2 657 38.1
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 2.8e-95 353.2 654 38.4
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 3.6e-95 352.8 637 39.7
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 9.0e-94 348.2 628 40.0
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 2.6e-93 346.7 634 39.7
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 4.4e-93 345.9 654 38.5
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 7.6e-93 345.1 636 39.6
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 9.9e-93 344.7 652 39.3
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 2.9e-92 343.2 399 51.6
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 4.9e-92 342.4 639 39.1
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 4.9e-92 342.4 339 56.9
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 6.4e-92 342.0 399 50.9
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 1.4e-91 340.9 657 37.9
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.9e-91 340.5 654 38.1
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 5.4e-91 339.0 340 57.6
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 1.2e-90 337.8 339 57.2
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 4.6e-90 335.9 656 38.3
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 1.0e-89 334.7 319 61.1
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 1.7e-89 334.0 661 37.7
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 2.3e-89 333.6 340 57.1
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 8.7e-89 331.6 660 38.5
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 8.7e-89 331.6 660 38.5
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 7.3e-88 328.6 390 51.8
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 7.3e-88 328.6 650 37.1
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 2.8e-87 326.6 656 37.3
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 8.1e-87 325.1 654 36.1
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 5.3e-86 322.4 643 37.0
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 1.2e-85 321.2 398 49.2
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 1.3e-84 317.8 645 37.1
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 2.2e-84 317.0 645 37.1
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 4.2e-83 312.8 648 36.7
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 5.4e-83 312.4 385 49.6
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 1.6e-82 310.8 652 35.3
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 2.7e-82 310.1 668 34.7
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 2.7e-82 310.1 653 35.7
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 3.5e-82 309.7 650 35.5
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.6e-82 309.3 646 35.9
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 6.0e-82 308.9 631 36.6
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 2.3e-81 307.0 651 35.5
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 3.0e-81 306.6 653 35.4
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 5.1e-81 305.8 651 35.6
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 1.1e-80 304.7 653 36.0
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 1.1e-80 304.7 653 36.0
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 1.1e-80 304.7 653 36.0
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 1.1e-80 304.7 659 35.8
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 9.6e-80 301.6 653 34.9
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 2.8e-79 300.1 651 36.6
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 6.2e-79 298.9 398 48.5
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.4e-78 297.7 654 35.0
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 6.9e-78 295.4 339 51.0
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 1.5e-77 294.3 653 35.4
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 3.5e-74 283.1 656 33.8
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 6.0e-74 282.3 320 53.1
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 8.7e-73 278.5 320 52.8
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 1.1e-72 278.1 321 53.0
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 1.9e-72 277.3 320 52.8
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 3.3e-72 276.6 313 54.0
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 4.0e-70 269.6 362 47.0
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 1.5e-69 267.7 322 51.2
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 2.2e-68 263.8 320 50.6
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 2.2e-68 263.8 320 50.6
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 2.7e-66 256.9 318 48.7
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 4.6e-66 256.1 315 47.9
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 1.0e-65 255.0 312 50.3
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 4.8e-63 246.1 339 46.9
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 1.8e-62 244.2 316 49.1
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 1.8e-62 244.2 343 45.2
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.1e-62 243.4 229 59.0
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 5.3e-62 242.7 317 47.3
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 2.6e-61 240.4 320 47.5
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 4.5e-61 239.6 265 53.6
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 7.7e-61 238.8 572 33.4
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 2.5e-59 233.8 314 46.5
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 2.1e-58 230.7 315 46.7
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 1.4e-57 228.0 316 46.5
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.4e-57 228.0 310 47.4
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 3.9e-57 226.5 316 47.2
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.1e-54 218.4 313 46.6
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 1.4e-54 218.0 297 47.8
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.1e-54 216.5 321 45.5
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 5.3e-54 216.1 316 43.0
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 1.7e-52 211.1 307 45.6
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 1.7e-52 211.1 334 41.6
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 9.4e-51 205.3 310 44.5
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 2.1e-50 204.1 508 33.5
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 6.7e-49 199.1 310 43.5
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 6.7e-49 199.1 310 43.5
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 8.8e-49 198.7 310 43.5
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 2.8e-47 193.7 336 39.3
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 7.2e-43 179.1 336 37.5
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 1.3e-39 168.3 148 60.8
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.5e-37 160.2 141 63.1
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 2.5e-35 154.1 358 32.4
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 7.2e-35 152.5 199 45.2
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 2.8e-31 140.6 120 64.2
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 4.2e-27 126.7 314 31.5
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 1.7e-15 88.2 381 25.5
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 1.1e-14 85.5 90 51.1
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 1.4e-14 85.1 95 49.5
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.7e-12 78.2 80 51.2
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 9.5e-11 72.4 361 26.3
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 2.0e-08 64.7 84 47.6
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 6.4e-07 59.7 49 57.1
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 5.4e-06 56.6 62 51.6


User provided reference genes

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