Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 4.1e-113 411.4 202 100.0
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 3.1e-97 358.6 202 82.7
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 4.1e-97 358.2 202 83.7
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 5.3e-97 357.8 202 83.2
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 2.0e-96 355.9 274 68.6
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 1.0e-95 353.6 201 81.6
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 6.5e-95 350.9 202 81.7
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 3.2e-94 348.6 202 79.2
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 3.2e-94 348.6 200 81.0
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 4.2e-94 348.2 206 79.6
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 5.5e-94 347.8 202 79.2
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.2e-93 346.7 202 78.7
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.6e-93 346.3 202 78.2
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 2.7e-93 345.5 204 80.4
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 6.1e-93 344.4 202 78.2
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 6.8e-92 340.9 228 73.7
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 1.2e-91 340.1 204 77.9
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.0e-91 339.3 200 79.0
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 2.6e-91 339.0 202 77.7
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 4.4e-91 338.2 198 78.8
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 9.7e-91 337.0 200 78.0
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.7e-90 336.3 198 78.8
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 2.8e-90 335.5 206 77.7
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 2.8e-90 335.5 205 78.0
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 3.5e-88 328.6 205 74.1
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 1.0e-87 327.0 204 72.5
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.7e-87 326.2 202 74.3
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 2.2e-87 325.9 195 76.9
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 2.9e-87 325.5 203 75.4
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 2.9e-87 325.5 200 77.0
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 5.0e-87 324.7 202 75.2
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 5.0e-87 324.7 202 74.8
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 6.5e-87 324.3 202 73.8
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.5e-86 323.2 202 75.7
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 1.5e-86 323.2 202 73.8
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 4.2e-86 321.6 200 74.5
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 7.2e-86 320.9 203 70.9
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 7.2e-86 320.9 187 78.1
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 1.2e-85 320.1 208 74.0
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.2e-85 320.1 202 73.3
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 2.1e-85 319.3 208 74.0
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 4.7e-85 318.2 204 70.6
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 1.0e-84 317.0 200 73.5
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.0e-84 317.0 194 76.3
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 1.0e-84 317.0 194 76.3
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 3.0e-84 315.5 203 72.9
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 5.2e-84 314.7 202 72.8
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 2.0e-83 312.8 203 72.4
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 4.4e-83 311.6 198 69.7
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 4.4e-83 311.6 205 71.2
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 7.5e-83 310.8 207 71.0
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.3e-82 310.1 200 72.5
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 2.2e-82 309.3 208 67.8
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 2.8e-82 308.9 194 73.2
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 3.7e-82 308.5 203 70.4
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 3.7e-82 308.5 195 70.3
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 6.3e-82 307.8 203 70.0
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 6.3e-82 307.8 200 70.0
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.1e-81 307.0 202 71.8
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 3.1e-81 305.4 200 71.5
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 7.0e-81 304.3 203 70.4
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 9.1e-81 303.9 193 75.1
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 3.5e-80 302.0 208 68.8
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 5.9e-80 301.2 202 68.8
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 7.7e-80 300.8 198 66.7
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 1.3e-79 300.1 206 66.0
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 8.6e-79 297.4 200 73.5
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 8.6e-79 297.4 194 68.6
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 1.1e-78 297.0 208 67.8
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 1.5e-78 296.6 202 66.8
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 3.3e-78 295.4 192 70.3
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 9.5e-78 293.9 196 68.4
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 1.6e-77 293.1 202 67.3
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 2.1e-77 292.7 203 66.5
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 3.6e-77 292.0 197 69.5
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 1.0e-76 290.4 196 68.9
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 1.8e-76 289.7 191 70.2
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 8.9e-76 287.3 207 66.2
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 1.5e-75 286.6 196 67.9
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.5e-75 286.6 204 64.7
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.5e-75 286.6 204 64.7
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 2.0e-75 286.2 196 68.4
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 2.0e-75 286.2 181 74.6
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 7.5e-75 284.3 171 74.9
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 7.5e-75 284.3 192 70.3
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 1.7e-74 283.1 196 66.8
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 2.2e-74 282.7 209 64.6
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 3.7e-74 282.0 210 63.3
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 8.3e-74 280.8 193 68.4
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 8.3e-74 280.8 204 64.2
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 1.8e-73 279.6 204 65.2
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 7.0e-73 277.7 204 61.8
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 1.2e-72 276.9 192 67.2
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 1.6e-72 276.6 275 53.5
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 2.7e-72 275.8 179 73.7
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 2.7e-72 275.8 204 63.7
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 7.8e-72 274.2 198 63.6
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 7.8e-72 274.2 205 64.9
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 1.3e-71 273.5 198 64.1
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 2.3e-71 272.7 198 64.1
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 8.6e-71 270.8 198 63.6
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 1.1e-70 270.4 147 81.0
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 2.5e-70 269.2 196 63.3
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 7.3e-70 267.7 206 61.7
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 2.1e-69 266.2 212 63.2
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 3.6e-69 265.4 200 64.5
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 2.3e-68 262.7 194 62.9
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 3.1e-68 262.3 190 67.4
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 5.2e-68 261.5 183 66.7
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 3.7e-66 255.4 190 65.8
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 3.7e-66 255.4 190 65.8
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 3.2e-65 252.3 202 61.4
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 1.6e-64 250.0 205 59.5
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 4.6e-64 248.4 160 72.5
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 6.0e-64 248.1 164 71.3
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 6.0e-64 248.1 207 60.9
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 3.9e-63 245.4 201 60.2
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 3.3e-62 242.3 217 58.1
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 9.5e-62 240.7 148 70.9
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.2e-61 240.4 175 64.0
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 2.8e-61 239.2 149 73.2
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 1.8e-60 236.5 202 56.9
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 4.9e-58 228.4 192 60.9
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 9.2e-57 224.2 195 54.9
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 3.9e-55 218.8 199 48.2
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 1.5e-54 216.9 141 71.6
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 3.3e-54 215.7 155 70.3
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 1.6e-53 213.4 160 67.5
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 4.7e-53 211.8 197 52.3
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 6.2e-53 211.5 189 55.0
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 2.3e-52 209.5 156 62.8
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 4.0e-52 208.8 191 58.1
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 2.6e-51 206.1 187 51.3
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 3.4e-51 205.7 194 55.2
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 5.8e-51 204.9 196 51.0
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 9.9e-51 204.1 149 67.1
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 2.2e-50 203.0 142 70.4
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 8.3e-50 201.1 202 49.5
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 4.1e-49 198.7 170 55.3
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 3.5e-48 195.7 108 75.9
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 1.0e-47 194.1 193 51.8
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 1.6e-45 186.8 182 48.4
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 3.6e-45 185.7 197 45.7
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 3.1e-44 182.6 203 46.3
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 7.6e-43 177.9 203 46.3
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 1.9e-41 173.3 134 59.7
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 2.4e-41 172.9 196 43.4
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 1.7e-39 166.8 149 56.4
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 8.1e-37 157.9 194 46.4
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 8.1e-37 157.9 194 46.4
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 6.9e-36 154.8 194 46.9
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 1.0e-31 141.0 209 40.2
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.8e-28 130.2 87 64.4
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.3e-26 124.0 90 62.2
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 1.7e-18 97.1 157 40.1
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 6.5e-18 95.1 74 59.5
MELO3C018834.2 Cucumis melo HOM05D006348 ORTHO05D008261 1.5e-14 84.0 162 29.0
Atru.chr6.3231 Acer truncatum HOM05D006348 ORTHO05D008261 2.5e-14 83.2 159 29.6
ClCG02G002100 Citrullus lanatus HOM05D006348 ORTHO05D008261 3.3e-14 82.8 158 29.7
Aqoxy1G03030 Aquilegia oxysepala HOM05D006348 ORTHO05D008261 9.6e-14 81.3 152 30.3
EL10Ac5g11991 Beta vulgaris HOM05D006348 ORTHO05D008261 9.6e-14 81.3 151 30.5
CARHR222170 Cardamine hirsuta HOM05D006348 ORTHO05D008261 9.6e-14 81.3 163 28.2
AT4G15420 Arabidopsis thaliana HOM05D006348 ORTHO05D008261 2.1e-13 80.1 160 28.1
Dinv08741 Davidia involucrata HOM05D006348 ORTHO05D008261 2.8e-13 79.7 157 30.6
ATR0681G302 Amborella trichopoda HOM05D006348 ORTHO05D008261 3.7e-13 79.3 166 31.3
AL7G40130 Arabidopsis lyrata HOM05D006348 ORTHO05D008261 4.8e-13 79.0 160 28.1
SGA_v2.0_scaffold159G37573 Striga asiatica HOM05D006348 ORTHO05D008261 2.4e-12 76.6 158 27.8
Nn1g03434 Nelumbo nucifera HOM05D006348 ORTHO05D008261 5.3e-12 75.5 151 30.5
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 2.0e-11 73.6 158 29.1
Pp3c3_2100 Physcomitrium patens HOM05D006348 ORTHO05D008261 4.5e-11 72.4 158 27.8
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 1.0e-10 71.2 55 50.9
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 2.2e-10 70.1 39 74.4
PGSC0003DMG400006141 Solanum tuberosum HOM05D006348 ORTHO05D008261 2.9e-10 69.7 161 27.3
Glyma.04G091000 Glycine max HOM05D004775 ORTHO05D005351 6.7e-07 58.5 63 58.7
Zm00001eb329620 Zea mays HOM05D004775 ORTHO05D005351 1.1e-06 57.8 96 35.4
MBI15_g39225_MAGBIO Magnolia biondii HOM05D022081 ORTHO05D005351 9.7e-06 54.7 43 53.5


User provided reference genes

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