Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 7.5e-297 1023.1 513 100.0
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 1.0e-277 959.5 561 87.9
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 1.5e-236 822.8 533 78.4
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 5.7e-236 820.8 522 78.5
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 3.1e-234 815.1 512 79.7
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 7.6e-233 810.4 522 78.0
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 7.6e-233 810.4 470 83.8
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 2.9e-232 808.5 522 78.0
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 3.8e-232 808.1 522 77.6
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.9e-231 805.8 507 78.5
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 2.1e-230 802.4 461 84.4
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 2.1e-230 802.4 461 84.6
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 3.0e-229 798.5 516 77.7
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 5.1e-229 797.7 493 78.7
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 6.7e-229 797.3 517 77.6
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 6.7e-229 797.3 522 76.6
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.1e-228 796.6 531 76.6
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 1.1e-228 796.6 507 78.9
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 3.3e-228 795.0 508 78.3
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 5.7e-228 794.3 460 84.6
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 5.7e-228 794.3 493 78.3
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 7.4e-228 793.9 492 79.3
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 2.2e-227 792.3 525 75.8
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.8e-227 792.0 459 82.8
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 3.7e-227 791.6 459 83.0
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 4.8e-227 791.2 462 82.9
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 4.8e-227 791.2 463 82.7
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 8.2e-227 790.4 464 82.3
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 2.4e-226 788.9 512 77.1
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 4.1e-226 788.1 524 75.6
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 4.1e-226 788.1 516 76.7
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 5.3e-226 787.7 516 76.6
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 6.9e-226 787.3 515 75.3
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 6.9e-226 787.3 521 73.5
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 6.9e-226 787.3 509 76.8
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 9.0e-226 786.9 523 76.7
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 9.0e-226 786.9 516 76.9
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 9.0e-226 786.9 540 75.0
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 9.0e-226 786.9 460 82.6
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 1.2e-225 786.6 514 75.7
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 3.4e-225 785.0 462 81.8
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 5.9e-225 784.3 464 81.5
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 7.7e-225 783.9 502 76.5
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 2.2e-224 782.3 461 81.1
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 2.2e-224 782.3 459 82.4
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.8e-224 781.6 560 72.1
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 5.0e-224 781.2 476 79.2
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 6.5e-224 780.8 520 76.0
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 8.5e-224 780.4 538 73.2
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 1.1e-223 780.0 463 82.1
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.1e-223 780.0 461 81.8
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.4e-223 779.6 548 74.1
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.9e-223 779.2 494 77.3
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.9e-223 779.2 562 71.7
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 2.5e-223 778.9 518 74.7
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 2.5e-223 778.9 484 78.5
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 1.2e-222 776.5 504 77.0
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.6e-222 776.2 461 80.3
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 4.6e-222 774.6 461 80.3
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 4.6e-222 774.6 512 75.4
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 6.1e-222 774.2 515 74.0
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 1.0e-221 773.5 464 80.6
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.4e-221 773.1 473 78.6
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 3.0e-221 771.9 526 74.1
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 3.9e-221 771.5 503 74.8
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 8.8e-221 770.4 508 74.8
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 2.5e-220 768.8 503 74.4
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 4.3e-220 768.1 510 74.7
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 5.7e-220 767.7 459 80.4
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 5.7e-220 767.7 513 74.9
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 9.7e-220 766.9 515 74.0
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 9.7e-220 766.9 489 77.7
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.3e-219 766.5 503 74.8
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 1.7e-219 766.1 513 73.7
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 2.8e-219 765.4 518 74.5
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 2.8e-219 765.4 459 79.7
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 8.2e-219 763.8 520 74.2
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 8.2e-219 763.8 474 78.1
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.1e-218 763.5 459 80.4
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 1.1e-218 763.5 502 75.1
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.1e-218 763.5 460 80.0
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.8e-218 762.7 534 72.3
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 3.1e-218 761.9 453 81.9
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 6.9e-218 760.8 512 73.6
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 6.9e-218 760.8 462 79.2
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.5e-217 759.6 459 80.6
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 1.5e-217 759.6 537 72.3
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 2.0e-217 759.2 512 73.4
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 2.6e-217 758.8 509 73.7
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 4.5e-217 758.1 513 73.1
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.0e-216 756.9 457 79.2
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 2.2e-216 755.7 513 73.3
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 3.8e-216 755.0 468 77.6
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 8.5e-216 753.8 534 71.7
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 3.6e-214 748.4 537 70.4
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 3.9e-213 745.0 515 72.6
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 9.7e-212 740.3 522 71.1
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 7.0e-210 734.2 467 77.1
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 1.0e-208 730.3 463 77.8
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 3.8e-208 728.4 523 72.3
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.9e-207 726.1 475 74.3
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 2.7e-206 722.2 461 76.4
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 2.2e-203 712.6 458 73.6
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 2.6e-201 705.7 462 72.5
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 5.5e-199 698.0 464 71.6
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 3.6e-198 695.3 414 80.4
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 8.0e-198 694.1 510 69.2
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.4e-197 693.3 459 74.3
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 5.2e-197 691.4 418 80.1
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 5.7e-196 688.0 485 67.6
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 1.8e-194 682.9 460 70.7
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.1e-191 673.7 463 72.4
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 1.9e-191 672.9 378 88.1
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.9e-191 672.9 450 78.0
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.9e-191 672.9 452 77.2
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 4.2e-191 671.8 511 69.1
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 6.1e-190 667.9 431 75.9
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 3.1e-186 655.6 373 84.2
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 3.8e-184 648.7 454 70.3
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 2.5e-183 646.0 460 72.0
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 7.2e-183 644.4 373 82.6
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 8.9e-181 637.5 391 81.6
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 2.6e-180 636.0 453 67.3
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 4.0e-173 612.1 468 66.0
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 1.5e-172 610.1 711 48.7
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 5.8e-172 608.2 453 69.5
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 3.7e-171 605.5 454 66.5
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 1.2e-158 563.9 332 84.6
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.1e-154 550.8 404 70.8
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 5.7e-119 432.2 372 64.0
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 6.1e-113 412.1 308 70.8
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 1.5e-108 397.5 238 80.3
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 6.5e-99 365.5 292 63.0
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 1.7e-94 350.9 247 72.5
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 7.7e-92 342.0 449 40.5
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.3e-88 330.5 201 80.1
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 4.0e-88 329.7 459 39.7
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.7e-83 314.3 452 38.9
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 2.2e-78 297.4 225 66.7
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 1.3e-62 245.0 131 88.5
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.4e-61 241.5 400 40.0
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 4.0e-56 223.4 194 61.9
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 4.4e-55 219.9 165 69.1
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 9.8e-55 218.8 170 64.1
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 1.6e-49 201.4 196 55.6
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 7.8e-44 182.6 382 31.2
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 7.8e-44 182.6 98 89.8
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 1.2e-41 175.3 132 59.8
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 3.6e-41 173.7 249 40.6
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 3.1e-40 170.6 123 60.2
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 4.0e-40 170.2 91 91.2
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 1.6e-36 158.3 122 64.8
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 3.6e-33 147.1 80 83.8
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 2.0e-31 141.4 93 77.4
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.2e-28 132.1 129 47.3
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 1.6e-28 131.7 74 85.1
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 1.3e-27 128.6 290 29.7
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 2.5e-26 124.4 100 63.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 4.3e-26 123.6 100 62.0
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 6.4e-14 83.2 57 59.6
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 7.9e-12 76.3 67 58.2
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.3e-11 75.5 41 78.0
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 2.3e-11 74.7 47 72.3
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 2.5e-10 71.2 109 48.6
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 2.0e-07 61.6 35 80.0
GSVIVG01028056001 Vitis vinifera HOM05D003197 ORTHO05D003769 2.6e-07 61.2 289 26.6
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 4.5e-07 60.5 38 76.3
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 4.9e-06 57.0 34 76.5


User provided reference genes

Program Settings