Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G103216 Populus trichocarpa HOM05D004661 ORTHO05D005827 2.2e-69 265.4 122 100.0
Manes.02G147000 Manihot esculenta HOM05D004661 ORTHO05D005827 2.4e-20 102.4 58 81.0
Potri.005G158300 Populus trichocarpa HOM05D004661 ORTHO05D005827 7.1e-20 100.9 58 84.5
Ciclev10000370m.g Citrus clementina HOM05D004661 ORTHO05D005827 2.1e-19 99.4 58 72.4
FvH4_5g35830 Fragaria vesca HOM05D004661 ORTHO05D005827 2.1e-19 99.4 58 79.3
FAN18G2343 Fragaria x ananassa HOM05D004661 ORTHO05D005827 2.1e-19 99.4 58 79.3
TWI56G1288 Tripterygium wilfordii HOM05D004661 ORTHO05D005827 3.5e-19 98.6 58 75.9
FAN04G0711 Fragaria x ananassa HOM05D004661 ORTHO05D005827 1.3e-18 96.7 58 77.6
FAN13G1835 Fragaria x ananassa HOM05D004661 ORTHO05D005827 1.3e-18 96.7 58 77.6
THA.LOC104799016 Tarenaya hassleriana HOM05D004661 ORTHO05D005827 1.3e-18 96.7 58 75.9
TWI12G0736 Tripterygium wilfordii HOM05D004661 ORTHO05D005827 1.3e-18 96.7 58 75.9
MD08G1192800 Malus domestica HOM05D004661 ORTHO05D005827 2.3e-18 95.9 58 74.1
RcHm_v2.0_Chr7g0237521 Rosa chinensis HOM05D004661 ORTHO05D005827 2.3e-18 95.9 58 77.6
Prupe.1G527400 Prunus persica HOM05D004661 ORTHO05D005827 3.9e-18 95.1 58 74.1
Gohir.A05G221400 Gossypium hirsutum HOM05D004661 ORTHO05D005827 1.1e-17 93.6 58 70.7
Thecc.08G067600 Theobroma cacao HOM05D004661 ORTHO05D005827 1.1e-17 93.6 58 72.4
MD15G1381500 Malus domestica HOM05D004661 ORTHO05D005827 1.5e-17 93.2 58 72.4
Hund27004 Selenicereus undatus HOM05D004661 ORTHO05D005827 4.3e-17 91.7 58 70.7
QL09p017125 Quercus lobata HOM05D004661 ORTHO05D005827 7.3e-17 90.9 58 65.5
Aa31LG3G16190 Aethionema arabicum HOM05D004661 ORTHO05D005827 9.6e-17 90.5 58 69.0
BcaC04g19274 Brassica carinata HOM05D004661 ORTHO05D005827 9.6e-17 90.5 58 69.0
A10p26740 Brassica napus HOM05D004661 ORTHO05D005827 9.6e-17 90.5 58 69.0
C09p65890 Brassica napus HOM05D004661 ORTHO05D005827 9.6e-17 90.5 58 69.0
BolC9t59411H Brassica oleracea HOM05D004661 ORTHO05D005827 9.6e-17 90.5 58 69.0
BraA10t44730Z Brassica rapa HOM05D004661 ORTHO05D005827 9.6e-17 90.5 58 69.0
AT5G10940 Arabidopsis thaliana HOM05D004661 ORTHO05D005827 1.3e-16 90.1 58 69.0
Medtr3g100690 Medicago truncatula HOM05D004661 ORTHO05D005827 1.6e-16 89.7 58 72.4
THA.LOC104814992 Tarenaya hassleriana HOM05D004661 ORTHO05D005827 1.6e-16 89.7 58 70.7
AL6G21500 Arabidopsis lyrata HOM05D004661 ORTHO05D005827 2.1e-16 89.4 58 67.2
Ca_15986_v3 Cicer arietinum L. HOM05D004661 ORTHO05D005827 2.1e-16 89.4 58 69.0
Lalb_Chr23g0270111 Lupinus albus HOM05D004661 ORTHO05D005827 2.1e-16 89.4 58 67.2
Gohir.D05G224100 Gossypium hirsutum HOM05D004661 ORTHO05D005827 2.8e-16 89.0 58 67.2
Eucgr.F02126 Eucalyptus grandis HOM05D004661 ORTHO05D005827 3.6e-16 88.6 54 68.5
CANSAT25G3216 Cannabis sativa HOM05D004661 ORTHO05D005827 4.8e-16 88.2 58 69.0
Duzib041G0224 Durio zibethinus HOM05D004661 ORTHO05D005827 4.8e-16 88.2 61 65.6
GSVIVG01009135001 Vitis vinifera HOM05D004661 ORTHO05D005827 4.8e-16 88.2 58 65.5
CSS0032958 Camellia sinensis var. sinensis HOM05D004661 ORTHO05D005827 6.2e-16 87.8 58 67.2
Ah.05g170630 Amaranthus hybridus HOM05D004661 ORTHO05D005827 8.1e-16 87.4 58 67.2
Gorai.009G231600 Gossypium raimondii HOM05D004661 ORTHO05D005827 8.1e-16 87.4 58 67.2
Nn5g29943 Nelumbo nucifera HOM05D004661 ORTHO05D005827 8.1e-16 87.4 58 69.0
CARHR202350 Cardamine hirsuta HOM05D004661 ORTHO05D005827 1.1e-15 87.0 58 65.5
Cfa013702 Carpinus fangiana HOM05D004661 ORTHO05D005827 1.1e-15 87.0 58 65.5
Solyc04g076020.3 Solanum lycopersicum HOM05D004661 ORTHO05D005827 1.1e-15 87.0 58 67.2
Sopen04g029970 Solanum pennellii HOM05D004661 ORTHO05D005827 1.1e-15 87.0 58 67.2
Lj1g0004448 Lotus japonicus HOM05D004661 ORTHO05D005827 1.4e-15 86.7 58 67.2
Sp6g32550 Schrenkiella parvula HOM05D004661 ORTHO05D005827 1.4e-15 86.7 58 63.8
PGR042G3759 Punica granatum HOM05D004661 ORTHO05D005827 1.8e-15 86.3 53 69.8
Gohir.A06G032640 Gossypium hirsutum HOM05D004661 ORTHO05D005827 2.4e-15 85.9 61 65.6
AUR62019009 Chenopodium quinoa HOM05D004661 ORTHO05D005827 3.1e-15 85.5 58 63.8
AUR62027850 Chenopodium quinoa HOM05D004661 ORTHO05D005827 3.1e-15 85.5 58 63.8
MELO3C003537.2 Cucumis melo HOM05D004661 ORTHO05D005827 3.1e-15 85.5 58 63.8
Gohir.D06G032700 Gossypium hirsutum HOM05D004661 ORTHO05D005827 3.1e-15 85.5 61 63.9
Gorai.010G036000 Gossypium raimondii HOM05D004661 ORTHO05D005827 3.1e-15 85.5 61 63.9
Sc26g0000230 Simmondsia chinensis HOM05D004661 ORTHO05D005827 3.1e-15 85.5 58 67.2
Atru.chr13.1049 Acer truncatum HOM05D004661 ORTHO05D005827 4.0e-15 85.1 58 69.0
CsaV3_3G047860 Cucumis sativus L. HOM05D004661 ORTHO05D005827 4.0e-15 85.1 58 63.8
Thhalv10012761m.g Eutrema salsugineum HOM05D004661 ORTHO05D005827 5.3e-15 84.7 58 62.1
Psat5g045560 Pisum sativum HOM05D004661 ORTHO05D005827 5.3e-15 84.7 58 67.2
Rhsim06G0074200 Rhododendron simsii HOM05D004661 ORTHO05D005827 5.3e-15 84.7 58 67.2
arahy.Tifrunner.gnm1.ann1.438KDZ Arachis hypogaea HOM05D004661 ORTHO05D005827 6.9e-15 84.3 64 64.1
HanXRQChr02g0047021 Helianthus annuus HOM05D004661 ORTHO05D005827 6.9e-15 84.3 58 63.8
Sed0012148 Sechium edule HOM05D004661 ORTHO05D005827 6.9e-15 84.3 58 63.8
Actinidia10366 Actinidia chinensis HOM05D004661 ORTHO05D005827 9.0e-15 84.0 58 67.2
Actinidia30809 Actinidia chinensis HOM05D004661 ORTHO05D005827 9.0e-15 84.0 58 67.2
VMungo1309G0150 Vigna mungo HOM05D004661 ORTHO05D005827 9.0e-15 84.0 58 67.2
Glyma.06G094900 Glycine max HOM05D004661 ORTHO05D005827 1.2e-14 83.6 58 67.2
Phvul.009G038100 Phaseolus vulgaris HOM05D004661 ORTHO05D005827 2.0e-14 82.8 58 65.5
arahy.Tifrunner.gnm1.ann1.D85VJY Arachis hypogaea HOM05D004661 ORTHO05D005827 2.6e-14 82.4 64 62.5
Sed0023876 Sechium edule HOM05D004661 ORTHO05D005827 3.4e-14 82.0 58 60.3
Phvul.010G090900 Phaseolus vulgaris HOM05D004661 ORTHO05D005827 5.8e-14 81.3 68 57.4
Cc10_g15570 Coffea canephora HOM05D004661 ORTHO05D005827 7.6e-14 80.9 63 57.1
TPR.G26024 Trifolium pratense HOM05D004661 ORTHO05D005827 7.6e-14 80.9 59 66.1
CiPaw.08G054000 Carya illinoinensis HOM05D004661 ORTHO05D005827 9.9e-14 80.5 58 62.1
PSO210G1320 Papaver somniferum HOM05D004661 ORTHO05D005827 1.3e-13 80.1 54 63.0
FAN08G3395 Fragaria x ananassa HOM05D004661 ORTHO05D005827 1.7e-13 79.7 87 50.6
TAR628G0590 Trochodendron aralioides HOM05D004661 ORTHO05D005827 1.7e-13 79.7 58 62.1
vmacro21311 Vaccinium macrocarpon HOM05D004661 ORTHO05D005827 1.7e-13 79.7 58 63.8
EL10Ac1g01103 Beta vulgaris HOM05D004661 ORTHO05D005827 6.4e-13 77.8 58 58.6
Glyma.04G093100 Glycine max HOM05D004661 ORTHO05D005827 8.4e-13 77.4 58 62.1
Migut.N02866 Erythranthe guttata HOM05D004661 ORTHO05D005827 1.4e-12 76.6 53 66.0
ECA247G4144 Erigeron canadensis HOM05D004661 ORTHO05D005827 2.4e-12 75.9 55 69.1
Aqoxy5G01331 Aquilegia oxysepala HOM05D004661 ORTHO05D005827 4.2e-12 75.1 58 58.6
Lsat_1_v5_gn_1_2220 Lactuca sativa HOM05D004661 ORTHO05D005827 5.4e-12 74.7 58 62.1
ATR0022G055 Amborella trichopoda HOM05D004661 ORTHO05D005827 6.0e-11 71.2 58 56.9
HPP92_009332 Vanilla planifolia HOM05D004661 ORTHO05D005827 2.3e-10 69.3 58 51.7
CDE10G0373 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 6.7e-10 67.8 58 55.2
Zm00001eb401530 Zea mays HOM05D004661 ORTHO05D005827 8.7e-10 67.4 55 49.1
CDE10G1141 Ceratophyllum demersum HOM05D004661 ORTHO05D005827 1.5e-09 66.6 58 55.2
SGA_v2.0_scaffold84G26469 Striga asiatica HOM05D004661 ORTHO05D005827 1.5e-09 66.6 54 63.0
Actinidia25390 Actinidia chinensis HOM05D004661 ORTHO05D005827 2.5e-09 65.9 47 70.2
Zm00001eb006570 Zea mays HOM05D004661 ORTHO05D005827 2.5e-09 65.9 55 49.1
Os03g0187300 Oryza sativa ssp. japonica HOM05D004661 ORTHO05D005827 5.6e-09 64.7 55 49.1
MSTRG.22174 Avicennia marina HOM05D004661 ORTHO05D005827 1.3e-08 63.5 52 61.5
Lsat_1_v5_gn_5_92401 Lactuca sativa HOM05D004661 ORTHO05D005827 4.8e-08 61.6 40 70.0
SalBow2G1697 Salvia bowleyana HOM05D004661 ORTHO05D005827 8.1e-08 60.8 82 42.7
SEGI_24481 Sequoiadendron giganteum HOM05D004661 ORTHO05D005827 4.0e-07 58.5 58 50.0
TAR376G0508 Trochodendron aralioides HOM05D004661 ORTHO05D005827 6.9e-07 57.8 34 73.5
Mapoly0005s0266 Marchantia polymorpha HOM05D004661 ORTHO05D005827 1.5e-06 56.6 59 47.5
Peaxi162Scf00281g00711 Petunia axillaris HOM05D004661 ORTHO05D005827 1.5e-06 56.6 34 70.6
AagrBONN_evm.TU.Sc2ySwM_228.1068 Anthoceros agrestis HOM05D004661 ORTHO05D005827 3.4e-06 55.5 59 45.8
DCAR_012867 Daucus carota HOM05D004661 ORTHO05D005827 3.4e-06 55.5 27 81.5


User provided reference genes

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