Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 1.7e-279 965.3 465 100.0
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 7.1e-254 880.2 539 81.8
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 1.2e-245 852.8 464 86.4
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 7.9e-245 850.1 465 86.0
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 4.3e-243 844.3 465 85.8
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 5.7e-243 844.0 488 82.8
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 2.1e-242 842.0 463 84.7
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 3.7e-242 841.3 465 85.4
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 9.0e-241 836.6 465 84.7
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 3.8e-239 831.2 464 84.3
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 4.9e-239 830.9 465 84.5
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 3.2e-238 828.2 465 83.9
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 5.5e-238 827.4 465 84.3
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 7.1e-238 827.0 465 84.1
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 9.3e-238 826.6 464 84.1
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 1.3e-236 822.8 461 83.1
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 3.0e-236 821.6 465 83.4
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 6.7e-236 820.5 465 84.5
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 1.1e-235 819.7 459 85.0
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 1.5e-235 819.3 465 83.2
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 3.3e-235 818.1 461 83.9
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 4.3e-235 817.8 465 83.0
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 9.7e-235 816.6 465 82.2
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 1.6e-234 815.8 465 83.0
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 4.8e-234 814.3 464 82.8
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 8.2e-234 813.5 465 82.2
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 1.4e-233 812.8 465 83.0
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 4.1e-233 811.2 465 82.8
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.5e-232 809.3 465 82.2
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 3.4e-232 808.1 465 81.9
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 1.0e-231 806.6 462 82.3
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.3e-231 806.2 485 79.2
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 2.2e-231 805.4 461 82.6
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 2.9e-231 805.1 465 81.9
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 2.9e-231 805.1 465 81.9
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 2.9e-231 805.1 463 82.3
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 3.8e-231 804.7 465 82.2
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 3.8e-231 804.7 461 83.3
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 8.5e-231 803.5 464 80.4
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 1.9e-230 802.4 465 81.3
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 2.5e-230 802.0 464 80.4
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 5.5e-230 800.8 461 82.2
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 9.4e-230 800.0 464 80.2
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 2.7e-229 798.5 462 80.7
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 2.7e-229 798.5 463 82.3
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 3.6e-229 798.1 465 80.2
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 4.6e-229 797.7 461 80.7
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 6.1e-229 797.3 465 79.6
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 7.9e-229 797.0 465 80.0
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 7.9e-229 797.0 462 81.4
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 1.8e-228 795.8 461 80.7
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 2.3e-228 795.4 465 79.4
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 8.8e-228 793.5 461 81.3
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.5e-227 792.7 461 81.1
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 4.3e-227 791.2 465 81.1
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 7.4e-227 790.4 463 80.6
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 2.8e-226 788.5 543 71.6
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 8.2e-226 786.9 465 79.8
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 1.8e-225 785.8 465 78.9
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 1.2e-224 783.1 465 79.4
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 1.2e-224 783.1 465 78.7
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 4.5e-224 781.2 465 79.6
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 5.9e-224 780.8 463 79.3
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 1.0e-223 780.0 463 79.0
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 1.3e-223 779.6 472 76.9
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 3.8e-223 778.1 466 77.9
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 8.5e-223 776.9 465 79.1
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 7.2e-222 773.9 461 78.3
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.6e-221 772.7 445 82.0
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 2.1e-221 772.3 465 79.8
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 3.6e-221 771.5 461 78.7
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 4.7e-221 771.2 461 78.7
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 4.7e-221 771.2 481 75.9
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 1.8e-220 769.2 465 76.8
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 3.3e-219 765.0 459 77.3
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 2.2e-218 762.3 459 77.1
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 8.2e-218 760.4 459 76.7
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 1.8e-217 759.2 465 75.3
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 5.3e-217 757.7 459 76.5
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 2.0e-216 755.7 488 75.0
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 4.5e-216 754.6 465 76.1
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 5.9e-216 754.2 461 77.7
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 7.7e-216 753.8 465 75.9
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 3.8e-215 751.5 465 76.1
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 3.8e-215 751.5 465 75.7
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 1.5e-214 749.6 443 79.5
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 1.9e-214 749.2 491 74.3
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 5.5e-214 747.7 439 79.7
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 2.1e-213 745.7 465 75.5
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 2.7e-213 745.3 483 72.5
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 4.7e-213 744.6 465 74.0
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 4.7e-213 744.6 465 75.3
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 8.0e-213 743.8 465 75.3
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 8.8e-212 740.3 436 79.1
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 2.0e-208 729.2 574 63.4
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 4.5e-208 728.0 455 76.7
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 9.4e-206 720.3 421 79.8
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 2.1e-205 719.2 462 76.2
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 6.1e-205 717.6 460 73.5
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 1.2e-203 713.4 460 73.3
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 2.6e-203 712.2 421 79.1
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 2.9e-199 698.7 458 72.1
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 7.2e-198 694.1 464 71.3
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 3.6e-197 691.8 385 85.5
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 7.0e-193 677.6 442 72.9
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 3.8e-191 671.8 464 67.0
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 1.1e-190 670.2 462 66.5
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 1.3e-186 656.8 464 66.8
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 3.7e-186 655.2 421 74.1
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 4.9e-186 654.8 465 66.0
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 4.6e-184 648.3 464 65.9
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 7.3e-182 641.0 445 67.0
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 4.7e-181 638.3 463 66.5
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 7.0e-177 624.4 466 62.2
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 1.3e-175 620.2 469 67.6
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 6.6e-175 617.8 348 83.3
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.9e-174 616.3 463 64.6
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 1.6e-173 613.2 460 63.0
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 3.6e-173 612.1 461 63.8
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 1.9e-166 589.7 479 61.8
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 1.7e-151 540.0 466 56.9
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.6e-147 526.2 311 80.4
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 2.1e-144 516.5 355 70.7
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 4.3e-126 455.7 421 53.7
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.6e-123 446.4 316 69.9
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 7.6e-123 444.9 269 77.0
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 1.4e-121 440.7 502 47.8
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 5.1e-119 432.2 255 78.8
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 2.9e-106 389.8 261 70.1
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.2e-99 367.9 326 60.1
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 3.6e-88 329.7 214 68.2
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 6.1e-88 328.9 197 80.7
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 3.0e-87 326.6 255 59.2
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 1.0e-79 301.6 242 59.1
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 7.8e-67 258.8 139 89.9
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 3.9e-58 229.9 144 77.1
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 1.3e-53 214.9 162 62.3
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 1.3e-45 188.3 178 59.0
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 4.9e-45 186.4 113 77.0
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 2.7e-43 180.6 115 80.0
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 1.3e-42 178.3 157 60.5
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 1.9e-41 174.5 101 84.2
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 1.3e-37 161.8 91 79.1
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 3.9e-34 150.2 129 61.2
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 5.5e-20 103.2 113 55.8
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 3.1e-15 87.4 48 93.8
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 3.1e-15 87.4 48 93.8
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 2.2e-13 81.3 57 57.9
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 6.5e-13 79.7 58 75.9
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 3.9e-10 70.5 57 57.9
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 1.3e-08 65.5 50 72.0
ATR1171G001 Amborella trichopoda HOM05D004653 ORTHO05D019566 2.6e-06 57.8 34 73.5


User provided reference genes

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