Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 1.2e-68 263.1 140 100.0
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 1.9e-56 222.6 142 85.2
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 9.9e-50 200.3 143 79.7
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 7.6e-34 147.5 144 63.9
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 5.6e-29 131.3 143 55.2
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 4.0e-27 125.2 118 63.6
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 2.2e-25 119.4 148 54.1
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 2.2e-25 119.4 149 54.4
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 1.1e-24 117.1 144 52.8
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 2.3e-22 109.4 119 52.9
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 4.3e-21 105.1 115 53.9
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 9.6e-21 104.0 124 54.0
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 6.2e-20 101.3 65 73.8
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.1e-19 100.5 110 53.6
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 1.4e-19 100.1 114 51.8
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 3.1e-19 99.0 144 46.5
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 9.0e-19 97.4 150 45.3
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 1.2e-18 97.1 151 45.0
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 2.6e-18 95.9 141 46.1
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 4.5e-18 95.1 96 56.2
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 4.5e-18 95.1 143 45.5
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 4.5e-18 95.1 143 45.5
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 4.5e-18 95.1 64 71.9
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 5.8e-18 94.7 142 44.4
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 7.6e-18 94.4 145 40.7
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.0e-17 94.0 132 47.0
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 1.0e-17 94.0 139 44.6
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 1.0e-17 94.0 114 48.2
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 1.0e-17 94.0 140 43.6
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 1.3e-17 93.6 64 70.3
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.3e-17 93.6 139 46.0
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 1.3e-17 93.6 148 44.6
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.7e-17 93.2 67 64.2
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 1.7e-17 93.2 117 47.0
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 2.9e-17 92.4 142 44.4
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 3.8e-17 92.0 139 44.6
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 6.5e-17 91.3 61 70.5
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 6.5e-17 91.3 132 45.5
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 8.4e-17 90.9 66 66.7
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 3.2e-16 89.0 58 69.0
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 3.2e-16 89.0 66 69.7
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 5.5e-16 88.2 132 47.7
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 7.1e-16 87.8 75 61.3
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 9.3e-16 87.4 149 42.3
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 2.1e-15 86.3 140 42.1
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 2.1e-15 86.3 75 60.0
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 2.1e-15 86.3 61 63.9
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 3.5e-15 85.5 61 63.9
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 4.6e-15 85.1 61 62.3
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 7.9e-15 84.3 88 50.0
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 1.3e-14 83.6 99 51.5
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 1.3e-14 83.6 99 51.5
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 1.3e-14 83.6 77 57.1
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 1.3e-14 83.6 77 57.1
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 1.3e-14 83.6 77 57.1
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 1.3e-14 83.6 147 44.9
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 1.8e-14 83.2 94 50.0
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 2.3e-14 82.8 88 50.0
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 3.0e-14 82.4 99 50.5
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 3.0e-14 82.4 99 50.5
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 3.0e-14 82.4 99 48.5
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 3.9e-14 82.0 116 44.8
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 3.9e-14 82.0 116 44.8
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 5.1e-14 81.6 142 42.3
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 8.7e-14 80.9 113 43.4
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 8.7e-14 80.9 113 43.4
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 8.7e-14 80.9 113 43.4
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 8.7e-14 80.9 131 43.5
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 1.5e-13 80.1 91 52.7
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 1.5e-13 80.1 113 42.5
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 1.5e-13 80.1 113 42.5
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 1.5e-13 80.1 61 63.9
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 3.3e-13 79.0 61 63.9
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 3.3e-13 79.0 80 52.5
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 3.3e-13 79.0 89 48.3
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 3.3e-13 79.0 154 39.0
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 4.3e-13 78.6 137 39.4
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 4.3e-13 78.6 100 51.0
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 5.7e-13 78.2 61 63.9
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 5.7e-13 78.2 66 59.1
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 2.8e-12 75.9 108 40.7
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 2.8e-12 75.9 117 42.7
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 2.8e-12 75.9 117 42.7
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 2.8e-12 75.9 100 47.0
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 6.3e-12 74.7 141 39.7
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 8.2e-12 74.3 140 39.3
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 8.2e-12 74.3 129 40.3
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 1.1e-11 73.9 92 47.8
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 1.1e-11 73.9 118 44.1
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 1.4e-11 73.6 92 47.8
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 1.4e-11 73.6 119 43.7
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 1.8e-11 73.2 109 44.0
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.8e-11 73.2 56 55.4
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 2.4e-11 72.8 110 43.6
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 2.4e-11 72.8 92 47.8
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 4.1e-11 72.0 107 44.9
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 1.2e-10 70.5 127 39.4
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 1.2e-10 70.5 65 49.2
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 2.0e-10 69.7 99 43.4
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 2.0e-10 69.7 102 47.1
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 4.5e-10 68.6 80 51.2
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 4.5e-10 68.6 80 51.2
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 4.5e-10 68.6 80 51.2
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.3e-09 67.0 124 39.5
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.3e-09 67.0 124 39.5
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 5.0e-09 65.1 55 54.5
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 5.0e-09 65.1 55 54.5
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 1.1e-08 63.9 49 61.2
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 1.9e-08 63.2 59 52.5
Zm00001eb159180 Zea mays HOM05D006973 ORTHO05D008636 4.2e-08 62.0 56 50.0
HPP92_024628 Vanilla planifolia HOM05D006973 ORTHO05D008636 7.2e-08 61.2 82 40.2
Eucgr.A01970 Eucalyptus grandis HOM05D006973 ORTHO05D008636 9.3e-08 60.8 68 51.5
Os01g0630300 Oryza sativa ssp. japonica HOM05D006973 ORTHO05D008636 1.2e-07 60.5 57 47.4
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 1.2e-07 60.5 93 35.5
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 1.0e-06 57.4 86 37.2
SEGI_09603 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 3.9e-06 55.5 57 49.1
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 8.7e-06 54.3 123 31.7


User provided reference genes

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