Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 9.0e-82 307.0 169 100.0
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 3.3e-76 288.5 169 94.1
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.3e-75 286.6 169 90.5
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 3.1e-74 282.0 169 89.3
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 3.5e-65 251.9 169 81.1
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 1.3e-64 250.0 169 81.1
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 2.2e-64 249.2 169 78.7
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 5.0e-64 248.1 169 78.1
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 5.0e-64 248.1 169 80.5
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 6.5e-64 247.7 169 78.7
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 8.5e-64 247.3 169 79.3
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 3.2e-63 245.4 169 78.1
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 5.5e-63 244.6 169 78.1
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 4.7e-62 241.5 169 73.4
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 6.1e-62 241.1 169 77.5
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 6.1e-62 241.1 169 74.6
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.0e-61 240.4 170 74.7
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 1.4e-61 240.0 171 76.0
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 1.4e-61 240.0 171 76.0
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 1.4e-61 240.0 169 76.9
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 1.4e-61 240.0 161 75.8
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 8.8e-61 237.3 169 74.0
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 8.8e-61 237.3 169 75.1
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 2.6e-60 235.7 169 76.3
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 2.6e-60 235.7 171 75.4
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 4.4e-60 235.0 170 73.5
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 7.4e-60 234.2 169 73.4
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 9.7e-60 233.8 169 73.4
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 9.7e-60 233.8 169 74.6
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 1.7e-59 233.0 169 74.6
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 2.2e-59 232.6 170 74.1
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.2e-59 232.6 169 72.2
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 2.2e-59 232.6 169 72.2
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 4.8e-59 231.5 169 72.2
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 4.8e-59 231.5 169 71.6
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 4.8e-59 231.5 169 71.6
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 4.8e-59 231.5 169 74.0
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 4.8e-59 231.5 169 72.2
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 6.3e-59 231.1 169 71.6
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 8.2e-59 230.7 169 71.6
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 1.1e-58 230.3 169 71.0
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.4e-58 229.9 169 71.0
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 1.4e-58 229.9 170 75.3
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 5.3e-58 228.0 170 72.9
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 1.6e-57 226.5 169 72.2
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 1.6e-57 226.5 169 70.4
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 2.0e-57 226.1 171 76.0
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 2.0e-57 226.1 169 72.8
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 2.6e-57 225.7 171 73.1
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 2.6e-57 225.7 169 73.4
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 3.5e-57 225.3 169 70.4
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 4.5e-57 224.9 169 69.2
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 4.5e-57 224.9 169 71.0
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 5.9e-57 224.6 170 72.4
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 5.9e-57 224.6 169 69.8
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 7.7e-57 224.2 170 71.2
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 1.0e-56 223.8 170 70.6
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 1.3e-56 223.4 169 69.8
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 1.3e-56 223.4 170 71.8
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 1.7e-56 223.0 169 68.6
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 2.2e-56 222.6 165 72.1
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 2.9e-56 222.2 169 69.8
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 6.5e-56 221.1 170 67.6
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 8.5e-56 220.7 173 71.1
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 8.5e-56 220.7 166 69.3
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 1.1e-55 220.3 169 69.8
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 1.5e-55 219.9 169 72.8
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 2.5e-55 219.2 170 68.2
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 5.5e-55 218.0 171 71.3
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 5.5e-55 218.0 169 68.0
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 9.4e-55 217.2 169 69.8
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 9.4e-55 217.2 155 74.8
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 2.1e-54 216.1 171 69.0
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 2.7e-54 215.7 171 70.2
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 2.3e-53 212.6 170 67.6
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 2.3e-53 212.6 172 67.4
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 2.3e-53 212.6 169 65.7
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 2.3e-53 212.6 165 68.5
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 2.3e-53 212.6 171 69.0
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 3.0e-53 212.2 170 67.6
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 3.0e-53 212.2 169 68.6
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 4.0e-53 211.8 169 66.9
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 4.0e-53 211.8 169 66.9
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 5.2e-53 211.5 169 66.3
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 6.7e-53 211.1 172 70.3
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 6.7e-53 211.1 171 65.5
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 8.8e-53 210.7 171 64.9
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 8.8e-53 210.7 169 66.3
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 8.8e-53 210.7 169 65.7
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 1.2e-52 210.3 165 68.5
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 2.0e-52 209.5 169 65.7
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 2.0e-52 209.5 170 66.5
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 2.0e-52 209.5 169 65.7
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 2.0e-52 209.5 170 66.5
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 2.0e-52 209.5 172 66.3
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 2.6e-52 209.1 169 65.7
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 3.3e-52 208.8 170 66.5
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 3.3e-52 208.8 169 65.1
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 3.3e-52 208.8 169 65.1
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 3.3e-52 208.8 169 65.1
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 3.3e-52 208.8 169 65.1
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 3.3e-52 208.8 169 65.1
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 3.3e-52 208.8 169 65.1
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 3.3e-52 208.8 169 65.1
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 7.5e-52 207.6 171 67.3
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 9.7e-52 207.2 173 65.3
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 9.7e-52 207.2 171 67.3
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 9.7e-52 207.2 171 67.3
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 1.3e-51 206.8 172 64.5
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 1.7e-51 206.5 165 66.1
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 2.2e-51 206.1 172 66.9
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 2.2e-51 206.1 158 69.6
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 2.2e-51 206.1 170 65.9
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 3.7e-51 205.3 170 64.7
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 6.3e-51 204.5 169 64.5
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 6.3e-51 204.5 170 65.3
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 8.3e-51 204.1 169 64.5
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 1.1e-50 203.8 171 64.3
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 4.1e-50 201.8 169 63.9
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 4.1e-50 201.8 170 67.1
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 9.1e-50 200.7 169 63.3
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 1.2e-49 200.3 170 63.5
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 1.6e-49 199.9 171 62.6
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 1.6e-49 199.9 171 63.2
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 1.6e-49 199.9 171 62.6
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 1.6e-49 199.9 171 62.6
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 2.0e-49 199.5 167 63.5
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 2.0e-49 199.5 171 62.6
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 2.0e-49 199.5 171 64.9
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 3.5e-49 198.7 170 61.8
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 7.7e-49 197.6 171 66.7
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.1e-47 193.7 169 62.7
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 1.1e-47 193.7 170 63.5
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 2.5e-47 192.6 162 63.6
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 5.5e-47 191.4 169 63.3
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 5.5e-47 191.4 146 71.9
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 7.2e-47 191.0 161 59.6
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 1.6e-46 189.9 169 60.9
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 2.7e-41 172.6 102 79.4
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 7.7e-41 171.0 102 77.5
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 8.6e-40 167.5 100 77.0
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 1.8e-37 159.8 170 58.8
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 4.0e-37 158.7 175 55.4
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 6.8e-37 157.9 170 55.3
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 3.4e-36 155.6 100 73.0
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 1.3e-35 153.7 171 55.0
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 8.3e-35 151.0 143 60.1
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.1e-34 150.6 167 51.5
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.2e-33 147.1 171 49.1
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 8.6e-32 141.0 171 48.0
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 9.5e-31 137.5 174 44.3
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 1.0e-29 134.0 174 46.0
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 1.4e-29 133.7 217 41.9
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 2.9e-27 125.9 146 47.9
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 3.2e-26 122.5 145 49.7
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 5.4e-26 121.7 173 47.4
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 1.3e-24 117.1 162 45.7
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 8.6e-24 114.4 179 48.6
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.1e-23 114.0 70 72.9
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 9.5e-23 110.9 70 70.0
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 4.7e-22 108.6 150 45.3
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 7.0e-18 94.7 67 65.7
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.9e-16 89.0 81 58.0
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 1.1e-13 80.9 44 84.1
Cc01_g01310 Coffea canephora HOM05D004247 ORTHO05D004994 2.0e-12 76.6 69 72.5
TAR628G0544 Trochodendron aralioides HOM05D004247 ORTHO05D004994 4.7e-06 55.5 64 59.4


User provided reference genes

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