Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L007243 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 9.6e-57 223.8 161 100.0
Glyma.13G338000 Glycine max HOM05D001415 ORTHO05D001075 4.2e-20 102.1 104 82.7
Glyma.15G036400 Glycine max HOM05D001415 ORTHO05D001075 1.2e-19 100.5 103 81.6
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 3.1e-15 85.9 124 50.0
Glyma.18G076400 Glycine max HOM05D001415 ORTHO05D001075 2.6e-14 82.8 102 54.9
Medtr4g064520 Medicago truncatula HOM05D001415 ORTHO05D001075 1.0e-13 80.9 105 75.2
TPR.G23565 Trifolium pratense HOM05D001415 ORTHO05D001075 1.3e-13 80.5 107 58.9
Manes.01G170700 Manihot esculenta HOM05D001415 ORTHO05D001075 2.9e-13 79.3 102 78.4
Gohir.A05G093900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.5e-13 78.2 108 66.7
Gohir.D05G094400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.5e-13 78.2 108 66.7
Gorai.009G097500 Gossypium raimondii HOM05D001415 ORTHO05D001075 6.5e-13 78.2 108 66.7
Phvul.011G062700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 6.5e-13 78.2 107 69.2
Duzib150G0909 Durio zibethinus HOM05D001415 ORTHO05D001075 1.1e-12 77.4 107 70.1
Glyma.12G061000 Glycine max HOM05D008503 ORTHO05D001075 1.1e-12 77.4 111 55.9
COL.COLO4_18559 Corchorus olitorius HOM05D001415 ORTHO05D001075 2.5e-12 76.3 109 67.0
Sed0008013 Sechium edule HOM05D001415 ORTHO05D001075 2.5e-12 76.3 104 51.0
Thecc.09G317800 Theobroma cacao HOM05D001415 ORTHO05D001075 3.2e-12 75.9 110 68.2
Prupe.6G072200 Prunus persica HOM05D001415 ORTHO05D001075 5.5e-12 75.1 105 65.7
Lj3g0013501 Lotus japonicus HOM05D008503 ORTHO05D001075 7.2e-12 74.7 106 56.6
Manes.02G130200 Manihot esculenta HOM05D001415 ORTHO05D001075 9.4e-12 74.3 102 71.6
Duzib168G2106 Durio zibethinus HOM05D001415 ORTHO05D001075 6.1e-11 71.6 109 56.9
Glyma.11G137600 Glycine max HOM05D001415 ORTHO05D001075 8.0e-11 71.2 107 74.8
arahy.Tifrunner.gnm1.ann1.Z87QWF Arachis hypogaea HOM05D008503 ORTHO05D001075 1.0e-10 70.9 109 52.3
Lalb_Chr03g0026501 Lupinus albus HOM05D001415 ORTHO05D001075 1.0e-10 70.9 104 66.3
MD03G1087500 Malus domestica HOM05D001415 ORTHO05D001075 1.0e-10 70.9 101 62.4
Ciclev10030229m.g Citrus clementina HOM05D001415 ORTHO05D001075 2.3e-10 69.7 103 60.2
Lj3g0014912 Lotus japonicus HOM05D001415 ORTHO05D001075 2.3e-10 69.7 130 44.6
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 2.3e-10 69.7 92 52.2
BcaB06g28285 Brassica carinata HOM05D001415 ORTHO05D001075 3.0e-10 69.3 112 57.1
BcaB06g28286 Brassica carinata HOM05D001415 ORTHO05D001075 3.0e-10 69.3 112 57.1
Potri.001G242800 Populus trichocarpa HOM05D001415 ORTHO05D001075 5.2e-10 68.6 102 64.7
A04p22250 Brassica napus HOM05D008503 ORTHO05D001075 6.7e-10 68.2 112 50.9
BraA04t17777Z Brassica rapa HOM05D008503 ORTHO05D001075 6.7e-10 68.2 112 50.9
Thhalv10017949m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 1.1e-09 67.4 121 61.2
Medtr2g097570 Medicago truncatula HOM05D001415 ORTHO05D001075 1.1e-09 67.4 118 44.1
Atru.chr3.3969 Acer truncatum HOM05D001415 ORTHO05D001075 1.5e-09 67.0 106 58.5
arahy.Tifrunner.gnm1.ann1.K7ANH9 Arachis hypogaea HOM05D001415 ORTHO05D001075 1.5e-09 67.0 29 100.0
Gohir.A13G227216 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.5e-09 67.0 30 93.3
Gohir.D13G232500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.5e-09 67.0 30 93.3
Gorai.013G263300 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.5e-09 67.0 30 93.3
Lalb_Chr01g0003531 Lupinus albus HOM05D008503 ORTHO05D001075 1.5e-09 67.0 99 66.7
CARHR122420 Cardamine hirsuta HOM05D008503 ORTHO05D001075 2.0e-09 66.6 30 93.3
Cfa011527 Carpinus fangiana HOM05D001415 ORTHO05D001075 2.0e-09 66.6 30 93.3
ClCG03G001360 Citrullus lanatus HOM05D001415 ORTHO05D001075 2.0e-09 66.6 30 93.3
Haze_24132 Corylus avellana HOM05D001415 ORTHO05D001075 2.0e-09 66.6 30 93.3
CsaV3_1G034460 Cucumis sativus L. HOM05D001415 ORTHO05D001075 2.0e-09 66.6 30 93.3
Sp4g11940 Schrenkiella parvula HOM05D008503 ORTHO05D001075 2.0e-09 66.6 30 93.3
THA.LOC104800681 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 2.0e-09 66.6 30 93.3
MELO3C025900.2 Cucumis melo HOM05D001415 ORTHO05D001075 2.6e-09 66.2 113 53.1
PGR102G0519 Punica granatum HOM05D001415 ORTHO05D001075 2.6e-09 66.2 30 90.0
HanXRQChr01g0010481 Helianthus annuus HOM05D001415 ORTHO05D001075 3.3e-09 65.9 104 46.2
TPR.G5599 Trifolium pratense HOM05D001415 ORTHO05D001075 3.3e-09 65.9 116 44.0
RcHm_v2.0_Chr5g0065921 Rosa chinensis HOM05D001415 ORTHO05D001075 4.4e-09 65.5 102 66.7
TWI79G1693 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 5.7e-09 65.1 102 51.0
ClCG02G019980 Citrullus lanatus HOM05D001415 ORTHO05D001075 9.7e-09 64.3 28 92.9
Sed0002507 Sechium edule HOM05D001415 ORTHO05D001075 9.7e-09 64.3 28 92.9
CiPaw.13G091000 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.3e-08 63.9 30 90.0
CiPaw.14G067100 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.7e-08 63.5 100 62.0
Potri.009G034300 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.2e-08 63.2 89 64.0
MELO3C020615.2 Cucumis melo HOM05D001415 ORTHO05D001075 2.8e-08 62.8 124 43.5
FvH4_3g04210 Fragaria vesca HOM05D008503 ORTHO05D001075 1.1e-07 60.8 109 45.9
AT2G29125 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 1.4e-07 60.5 116 54.3
Carub.0004s1014 Capsella rubella HOM05D008503 ORTHO05D001075 1.4e-07 60.5 117 54.7
Duzib170G0931 Durio zibethinus HOM05D001415 ORTHO05D001075 1.4e-07 60.5 108 56.5
CANSAT54G2158 Cannabis sativa HOM05D001415 ORTHO05D001075 1.8e-07 60.1 114 59.6
Oeu053887.1 Olea europaea HOM05D001415 ORTHO05D001075 1.8e-07 60.1 107 50.5
BcaC02g08109 Brassica carinata HOM05D001415 ORTHO05D001075 3.1e-07 59.3 112 50.0
Thhalv10009168m.g Eutrema salsugineum HOM05D008503 ORTHO05D001075 3.1e-07 59.3 26 92.3
THA.LOC104826316 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 3.1e-07 59.3 113 51.3
AL4G23680 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 4.1e-07 58.9 116 53.4
Lsat_1_v5_gn_5_169241 Lactuca sativa HOM05D001415 ORTHO05D001075 4.1e-07 58.9 30 80.0
Cpa.g.sc81.113 Carica papaya HOM05D001415 ORTHO05D001075 5.3e-07 58.5 116 47.4
Nn2g13402 Nelumbo nucifera HOM05D001415 ORTHO05D001075 5.3e-07 58.5 76 43.4
A08p35630 Brassica napus HOM05D008503 ORTHO05D001075 7.0e-07 58.2 26 92.3
C08p03100 Brassica napus HOM05D008503 ORTHO05D001075 7.0e-07 58.2 26 92.3
BraA08t35469Z Brassica rapa HOM05D008503 ORTHO05D001075 7.0e-07 58.2 26 92.3
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 9.1e-07 57.8 29 79.3
HanXRQChr11g0327601 Helianthus annuus HOM05D001415 ORTHO05D001075 9.1e-07 57.8 30 76.7
Sc12g0001300 Simmondsia chinensis HOM05D001415 ORTHO05D001075 9.1e-07 57.8 30 80.0
AT1G07490 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 1.2e-06 57.4 26 88.5
BcaC07g41995 Brassica carinata HOM05D001415 ORTHO05D001075 1.2e-06 57.4 26 88.5
BcaC07g42471 Brassica carinata HOM05D008503 ORTHO05D001075 1.2e-06 57.4 26 88.5
A10p06020 Brassica napus HOM05D001415 ORTHO05D001075 1.2e-06 57.4 26 88.5
C08p50550 Brassica napus HOM05D001415 ORTHO05D001075 1.2e-06 57.4 26 88.5
BolC8t52582H Brassica oleracea HOM05D001415 ORTHO05D001075 1.2e-06 57.4 26 88.5
BraA10t42864Z Brassica rapa HOM05D001415 ORTHO05D001075 1.2e-06 57.4 26 88.5
Carub.0001s0681 Capsella rubella HOM05D008503 ORTHO05D001075 1.2e-06 57.4 26 88.5
Sp1g06220 Schrenkiella parvula HOM05D008503 ORTHO05D001075 1.2e-06 57.4 26 88.5
Manes.10G028700 Manihot esculenta HOM05D001415 ORTHO05D001075 1.6e-06 57.0 76 43.4
Sc21g0005940 Simmondsia chinensis HOM05D001415 ORTHO05D001075 2.0e-06 56.6 30 80.0
Nn2g11165 Nelumbo nucifera HOM05D001415 ORTHO05D001075 2.6e-06 56.2 101 38.6
Sed0023003 Sechium edule HOM05D001415 ORTHO05D001075 3.5e-06 55.8 106 52.8
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 4.5e-06 55.5 27 77.8
AT5G59510 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 5.9e-06 55.1 70 45.7
Eucgr.J01236 Eucalyptus grandis HOM05D001415 ORTHO05D001075 5.9e-06 55.1 29 69.0
Glyma.11G220000 Glycine max HOM05D001415 ORTHO05D001075 5.9e-06 55.1 29 72.4
Glyma.18G037400 Glycine max HOM05D001415 ORTHO05D001075 5.9e-06 55.1 29 72.4
MD01G1103800 Malus domestica HOM05D001415 ORTHO05D001075 5.9e-06 55.1 29 72.4
Thecc.10G082100 Theobroma cacao HOM05D001415 ORTHO05D001075 5.9e-06 55.1 29 75.9
BcaB08g36251 Brassica carinata HOM05D008503 ORTHO05D001075 7.7e-06 54.7 26 76.9
CSS0013409 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 7.7e-06 54.7 29 72.4
FAN10G0897 Fragaria x ananassa HOM05D001415 ORTHO05D001075 7.7e-06 54.7 29 72.4


User provided reference genes

Program Settings