Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001631 Phaseolus vulgaris HOM05D005291 ORTHO05D006556 2.6e-121 438.7 223 100.0
VMungo1215G2240 Vigna mungo HOM05D005291 ORTHO05D006556 6.9e-114 414.1 224 95.1
Lj6g0012734 Lotus japonicus HOM05D005291 ORTHO05D006556 6.7e-101 370.9 228 84.6
Glyma.05G022900 Glycine max HOM05D005291 ORTHO05D006556 2.0e-100 369.4 225 86.2
QL05p062860 Quercus lobata HOM05D005291 ORTHO05D006556 2.2e-99 365.9 227 84.6
Medtr2g029370 Medicago truncatula HOM05D005291 ORTHO05D006556 1.2e-97 360.1 225 81.3
TWI09G0987 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 2.0e-97 359.4 228 79.4
Cpa.g.sc882.3 Carica papaya HOM05D005291 ORTHO05D006556 4.5e-97 358.2 226 80.1
Haze_21121 Corylus avellana HOM05D005291 ORTHO05D006556 4.5e-97 358.2 228 80.7
COL.COLO4_30928 Corchorus olitorius HOM05D005291 ORTHO05D006556 1.7e-96 356.3 228 79.4
Haze_21115 Corylus avellana HOM05D005291 ORTHO05D006556 1.7e-96 356.3 228 80.3
arahy.Tifrunner.gnm1.ann1.PX7M3V Arachis hypogaea HOM05D005291 ORTHO05D006556 2.2e-96 355.9 229 80.3
Duzib235G0861 Durio zibethinus HOM05D005291 ORTHO05D006556 2.9e-96 355.5 228 78.5
TWI73G1099 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 2.9e-96 355.5 228 78.9
Thecc.06G135600 Theobroma cacao HOM05D005291 ORTHO05D006556 3.8e-96 355.1 230 80.0
Sed0028144 Sechium edule HOM05D005291 ORTHO05D006556 6.5e-96 354.4 229 80.8
Manes.16G056000 Manihot esculenta HOM05D005291 ORTHO05D006556 8.5e-96 354.0 232 78.4
Hma1.2p1_0326F.1_g126220 Hydrangea macrophylla HOM05D005291 ORTHO05D006556 1.5e-95 353.2 225 81.8
MELO3C021788.2 Cucumis melo HOM05D005291 ORTHO05D006556 1.9e-95 352.8 229 80.8
Sed0015115 Sechium edule HOM05D005291 ORTHO05D006556 1.9e-95 352.8 229 80.3
Eucgr.K00389 Eucalyptus grandis HOM05D005291 ORTHO05D006556 2.5e-95 352.4 229 79.9
TPR.G26533 Trifolium pratense HOM05D005291 ORTHO05D006556 4.2e-95 351.7 227 79.7
arahy.Tifrunner.gnm1.ann1.VHAI7W Arachis hypogaea HOM05D005291 ORTHO05D006556 7.2e-95 350.9 227 79.3
Duzib160G0628 Durio zibethinus HOM05D005291 ORTHO05D006556 9.4e-95 350.5 230 78.3
Lalb_Chr18g0057801 Lupinus albus HOM05D005291 ORTHO05D006556 9.4e-95 350.5 235 78.7
Nn7g37951 Nelumbo nucifera HOM05D005291 ORTHO05D006556 9.4e-95 350.5 224 77.7
Atru.chr10.620 Acer truncatum HOM05D005291 ORTHO05D006556 1.6e-94 349.7 226 80.1
CiPaw.10G112100 Carya illinoinensis HOM05D005291 ORTHO05D006556 1.6e-94 349.7 230 80.0
Gohir.A05G143600 Gossypium hirsutum HOM05D005291 ORTHO05D006556 4.7e-94 348.2 229 78.6
Potri.001G081500 Populus trichocarpa HOM05D005291 ORTHO05D006556 4.7e-94 348.2 229 79.5
Gohir.A06G138900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 6.1e-94 347.8 226 79.2
Gohir.D05G145900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 8.0e-94 347.4 229 79.0
Gorai.009G149800 Gossypium raimondii HOM05D005291 ORTHO05D006556 8.0e-94 347.4 229 79.0
CiPaw.09G150600 Carya illinoinensis HOM05D005291 ORTHO05D006556 1.0e-93 347.1 229 78.6
Sabra01G0058700 Salix brachista HOM05D005291 ORTHO05D006556 1.0e-93 347.1 229 78.2
RcHm_v2.0_Chr5g0019221 Rosa chinensis HOM05D005291 ORTHO05D006556 1.4e-93 346.7 229 78.6
Dinv01911 Davidia involucrata HOM05D005291 ORTHO05D006556 2.3e-93 345.9 233 78.1
FvH4_3g11800 Fragaria vesca HOM05D005291 ORTHO05D006556 3.0e-93 345.5 229 78.6
Gorai.010G170600 Gossypium raimondii HOM05D005291 ORTHO05D006556 3.0e-93 345.5 228 78.5
Prupe.4G105600 Prunus persica HOM05D005291 ORTHO05D006556 3.0e-93 345.5 231 77.9
FAN21G3936 Fragaria x ananassa HOM05D005291 ORTHO05D006556 4.0e-93 345.1 229 78.2
FAN25G3276 Fragaria x ananassa HOM05D005291 ORTHO05D006556 4.0e-93 345.1 229 78.2
MD10G1238800 Malus domestica HOM05D005291 ORTHO05D006556 4.0e-93 345.1 231 76.6
MSTRG.16324 Avicennia marina HOM05D005291 ORTHO05D006556 5.2e-93 344.7 232 77.6
Lj1A1140T41 Lonicera japonica HOM05D005291 ORTHO05D006556 5.2e-93 344.7 230 78.7
Gohir.D06G146300 Gossypium hirsutum HOM05D005291 ORTHO05D006556 8.8e-93 344.0 228 78.1
CDE05G2870 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 4.4e-92 341.7 226 77.9
MD05G1259200 Malus domestica HOM05D005291 ORTHO05D006556 5.7e-92 341.3 230 76.5
MSTRG.7576 Avicennia marina HOM05D005291 ORTHO05D006556 7.5e-92 340.9 231 77.9
Ciclev10016540m.g Citrus clementina HOM05D005291 ORTHO05D006556 1.3e-91 340.1 232 75.4
CsaV3_1G046680 Cucumis sativus L. HOM05D005291 ORTHO05D006556 1.3e-91 340.1 229 79.0
Oeu008978.1 Olea europaea HOM05D005291 ORTHO05D006556 2.2e-91 339.3 227 78.0
CAN.G675.15 Capsicum annuum HOM05D005291 ORTHO05D006556 3.7e-91 338.6 231 77.5
CDE02G3915 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 3.7e-91 338.6 226 77.9
TAR626G0502 Trochodendron aralioides HOM05D005291 ORTHO05D006556 4.8e-91 338.2 225 77.3
CARHR030790 Cardamine hirsuta HOM05D005291 ORTHO05D006556 8.2e-91 337.4 223 76.7
CDE01G0253 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 8.2e-91 337.4 227 77.5
SGA_v2.0_scaffold298G47643 Striga asiatica HOM05D005291 ORTHO05D006556 1.1e-90 337.0 230 76.1
CAN.G675.17 Capsicum annuum HOM05D005291 ORTHO05D006556 1.4e-90 336.7 230 78.3
Psat1g169240 Pisum sativum HOM05D005291 ORTHO05D006556 1.4e-90 336.7 179 91.1
PGSC0003DMG400021144 Solanum tuberosum HOM05D005291 ORTHO05D006556 1.4e-90 336.7 230 77.0
Aqoxy1G01510 Aquilegia oxysepala HOM05D005291 ORTHO05D006556 2.4e-90 335.9 227 75.8
CDE12G0048 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 4.1e-90 335.1 227 76.7
Cc09_g06610 Coffea canephora HOM05D005291 ORTHO05D006556 1.2e-89 333.6 235 77.0
Sopen02g018590 Solanum pennellii HOM05D005291 ORTHO05D006556 5.9e-89 331.3 230 75.7
CANSAT35G1185 Cannabis sativa HOM05D005291 ORTHO05D006556 7.7e-89 330.9 231 76.2
Sopen02g018600 Solanum pennellii HOM05D005291 ORTHO05D006556 7.7e-89 330.9 230 75.7
BcaC05g27163 Brassica carinata HOM05D005291 ORTHO05D006556 1.0e-88 330.5 230 74.3
A09p34920 Brassica napus HOM05D005291 ORTHO05D006556 1.0e-88 330.5 230 74.3
BolC5t31789H Brassica oleracea HOM05D005291 ORTHO05D006556 1.0e-88 330.5 230 74.3
BraA09t39022Z Brassica rapa HOM05D005291 ORTHO05D006556 1.0e-88 330.5 230 74.3
THA.LOC104814370 Tarenaya hassleriana HOM05D005291 ORTHO05D006556 1.0e-88 330.5 231 73.6
Ah.01g008620 Amaranthus hybridus HOM05D005291 ORTHO05D006556 2.9e-88 328.9 233 74.7
AL1G49710 Arabidopsis lyrata HOM05D005291 ORTHO05D006556 2.9e-88 328.9 225 73.8
C05p30540 Brassica napus HOM05D005291 ORTHO05D006556 2.9e-88 328.9 230 73.9
Solyc02g069450.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 3.8e-88 328.6 232 75.0
Ah.01g022810 Amaranthus hybridus HOM05D005291 ORTHO05D006556 6.5e-88 327.8 234 74.4
BcaB04g18162 Brassica carinata HOM05D005291 ORTHO05D006556 6.5e-88 327.8 223 76.2
Thhalv10008731m.g Eutrema salsugineum HOM05D005291 ORTHO05D006556 6.5e-88 327.8 225 73.8
Rhsim13G0127200 Rhododendron simsii HOM05D005291 ORTHO05D006556 6.5e-88 327.8 230 74.8
unitig_92.g28186 Utricularia gibba HOM05D005291 ORTHO05D006556 6.5e-88 327.8 230 73.5
Solyc02g069460.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 1.1e-87 327.0 232 75.0
BraA08t33062Z Brassica rapa HOM05D005291 ORTHO05D006556 1.5e-87 326.6 223 75.3
HanXRQChr17g0563071 Helianthus annuus HOM05D005291 ORTHO05D006556 1.5e-87 326.6 232 75.4
BcaB07g32794 Brassica carinata HOM05D005291 ORTHO05D006556 1.9e-87 326.2 232 73.3
AT1G31330 Arabidopsis thaliana HOM05D005291 ORTHO05D006556 2.5e-87 325.9 226 72.6
A08p10630 Brassica napus HOM05D005291 ORTHO05D006556 2.5e-87 325.9 223 74.9
Carub.0001s2977 Capsella rubella HOM05D005291 ORTHO05D006556 2.5e-87 325.9 225 72.9
Migut.M01951 Erythranthe guttata HOM05D005291 ORTHO05D006556 2.5e-87 325.9 226 74.3
vmacro03483 Vaccinium macrocarpon HOM05D005291 ORTHO05D006556 2.5e-87 325.9 232 73.7
BcaC07g37765 Brassica carinata HOM05D005291 ORTHO05D006556 9.4e-87 323.9 226 73.9
BolC8t48151H Brassica oleracea HOM05D005291 ORTHO05D006556 9.4e-87 323.9 226 73.9
Sp1g27160 Schrenkiella parvula HOM05D005291 ORTHO05D006556 1.2e-86 323.6 223 73.1
SGA_v2.0_scaffold223G42900 Striga asiatica HOM05D005291 ORTHO05D006556 1.2e-86 323.6 229 75.5
Actinidia33638 Actinidia chinensis HOM05D005291 ORTHO05D006556 1.6e-86 323.2 227 75.3
A07p09430 Brassica napus HOM05D005291 ORTHO05D006556 2.1e-86 322.8 225 75.1
BraA07t28739Z Brassica rapa HOM05D005291 ORTHO05D006556 2.1e-86 322.8 225 75.1
HanXRQChr12g0368521 Helianthus annuus HOM05D005291 ORTHO05D006556 3.6e-86 322.0 232 73.7
Aa31LG9G15960 Aethionema arabicum HOM05D005291 ORTHO05D006556 8.0e-86 320.9 227 72.7
Peaxi162Scf00267g01017 Petunia axillaris HOM05D005291 ORTHO05D006556 8.0e-86 320.9 228 74.6
EL10Ac9g21406 Beta vulgaris HOM05D005291 ORTHO05D006556 1.0e-85 320.5 231 73.6
Lsat_1_v5_gn_6_37081 Lactuca sativa HOM05D005291 ORTHO05D006556 1.8e-85 319.7 232 72.8
Sc10g0008690 Simmondsia chinensis HOM05D005291 ORTHO05D006556 2.3e-85 319.3 224 73.2
C07p14510 Brassica napus HOM05D005291 ORTHO05D006556 8.8e-85 317.4 178 86.5
BolC7t41950H Brassica oleracea HOM05D005291 ORTHO05D006556 8.8e-85 317.4 225 73.8
AUR62013057 Chenopodium quinoa HOM05D005291 ORTHO05D006556 8.8e-85 317.4 236 72.9
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.5e-84 316.6 236 71.2
PSO170G0936 Papaver somniferum HOM05D005291 ORTHO05D006556 2.6e-84 315.8 227 73.1
AUR62010064 Chenopodium quinoa HOM05D005291 ORTHO05D006556 5.7e-84 314.7 235 73.6
Ca_00782_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 5.7e-84 314.7 224 73.2
Ca_31080_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 5.7e-84 314.7 224 73.2
PSO017G5348 Papaver somniferum HOM05D005291 ORTHO05D006556 7.5e-84 314.3 227 72.2
ECA234G0485 Erigeron canadensis HOM05D005291 ORTHO05D006556 2.7e-81 305.8 207 76.8
HPP92_017743 Vanilla planifolia HOM05D005291 ORTHO05D006556 2.2e-80 302.8 213 72.3
ClCG01G009000 Citrullus lanatus HOM05D005291 ORTHO05D006556 4.2e-79 298.5 203 79.3
Cfa000743 Carpinus fangiana HOM05D005291 ORTHO05D006556 3.6e-78 295.4 157 89.8
Actinidia29307 Actinidia chinensis HOM05D005291 ORTHO05D006556 4.7e-78 295.0 229 68.1
ATR0763G286 Amborella trichopoda HOM05D005291 ORTHO05D006556 8.0e-78 294.3 203 73.4
Zm00001eb213670 Zea mays HOM05D005291 ORTHO05D006556 1.8e-77 293.1 215 71.6
Os03g0778100 Oryza sativa ssp. japonica HOM05D005291 ORTHO05D006556 3.1e-74 282.3 219 68.0
Oeu008714.1 Olea europaea HOM05D005291 ORTHO05D006556 1.2e-70 270.4 227 66.5
Nitab4.5_0008761g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 9.8e-68 260.8 224 65.2
Pp3c21_8800 Physcomitrium patens HOM05D005291 ORTHO05D006556 4.3e-63 245.4 196 63.8
Nitab4.5_0001312g0020 Nicotiana tabacum HOM05D005291 ORTHO05D006556 1.6e-62 243.4 221 62.9
Pp3c22_10850 Physcomitrium patens HOM05D005291 ORTHO05D006556 2.1e-62 243.0 197 62.4
Mapoly0075s0057 Marchantia polymorpha HOM05D005291 ORTHO05D006556 3.6e-62 242.3 225 59.6
Pp3c11_18230 Physcomitrium patens HOM05D005291 ORTHO05D006556 6.2e-62 241.5 215 60.0
CBR_g568 Chara braunii HOM05D005291 ORTHO05D006556 3.1e-61 239.2 222 57.7
Pp3c18_10730 Physcomitrium patens HOM05D005291 ORTHO05D006556 4.0e-61 238.8 225 56.4
SMO367G0762 Selaginella moellendorffii HOM05D005291 ORTHO05D006556 3.7e-59 232.3 174 66.1
AagrBONN_evm.TU.Sc2ySwM_344.4326 Anthoceros agrestis HOM05D005291 ORTHO05D006556 8.6e-56 221.1 156 67.9
Potri.003G148900 Populus trichocarpa HOM05D005291 ORTHO05D006556 8.9e-53 211.1 149 77.9
Cre09.g412100 Chlamydomonas reinhardtii HOM05D005291 ORTHO05D006556 5.4e-50 201.8 225 51.1
MCO07G173 Micromonas commoda HOM05D005291 ORTHO05D006556 5.1e-48 195.3 155 60.0
CDE12G0451 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 7.1e-42 174.9 150 67.3
PRCOL_00005797 Prasinoderma coloniale HOM05D005291 ORTHO05D006556 6.2e-38 161.8 172 48.8
Lalb_Chr20g0119941 Lupinus albus HOM05D005291 ORTHO05D006556 2.4e-34 149.8 77 84.4
Solyc08g074307.2 Solanum lycopersicum HOM05D005291 ORTHO05D006556 7.6e-28 128.3 126 64.3
Nitab4.5_0001219g0180 Nicotiana tabacum HOM05D005291 ORTHO05D006556 1.6e-22 110.5 134 56.7
arahy.Tifrunner.gnm1.ann1.7UV7DW Arachis hypogaea HOM05D005291 ORTHO05D083431 3.6e-22 109.4 138 49.3
BcaC03g16812 Brassica carinata HOM05D005291 ORTHO05D006556 1.4e-21 107.5 57 84.2
Nitab4.5_0005250g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 1.1e-13 81.3 110 53.6
HanXRQChr16g0517321 Helianthus annuus HOM05D005291 ORTHO05D006556 1.6e-09 67.4 44 79.5


User provided reference genes

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