Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 8.4e-304 1046.2 522 100.0
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 5.0e-264 914.1 518 87.5
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 2.0e-244 849.0 520 81.2
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 3.6e-230 801.6 518 76.3
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 3.9e-224 781.6 514 74.9
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 6.2e-222 774.2 523 74.0
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 6.0e-217 757.7 493 73.8
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 1.0e-216 756.9 554 69.9
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 6.6e-208 727.6 521 68.9
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 1.5e-207 726.5 483 72.5
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 4.3e-207 724.9 483 71.4
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 1.3e-203 713.4 488 69.7
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 3.2e-202 708.8 480 70.4
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 3.2e-202 708.8 489 70.3
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 5.4e-202 708.0 513 68.0
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 9.3e-202 707.2 479 71.2
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 3.0e-200 702.2 480 70.4
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 1.1e-199 700.3 493 67.5
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 3.3e-199 698.7 489 69.7
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 4.0e-197 691.8 502 66.7
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 3.4e-196 688.7 493 66.7
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 3.8e-195 685.3 519 66.1
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 1.1e-194 683.7 480 69.0
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 1.4e-194 683.3 510 65.7
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 1.9e-194 682.9 494 66.4
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 1.9e-194 682.9 502 65.9
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 2.4e-194 682.6 494 66.0
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 2.4e-194 682.6 515 64.9
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 5.4e-194 681.4 517 69.2
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 7.1e-194 681.0 494 65.8
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 9.3e-194 680.6 502 65.9
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 9.3e-194 680.6 489 67.7
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 2.7e-193 679.1 512 65.6
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 2.7e-193 679.1 488 67.4
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 4.6e-193 678.3 519 65.5
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 3.9e-192 675.2 516 64.7
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 8.7e-192 674.1 515 64.7
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 2.5e-191 672.5 488 65.8
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 4.3e-191 671.8 512 63.7
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 5.6e-191 671.4 494 65.2
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 2.8e-190 669.1 494 64.6
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 1.8e-189 666.4 506 64.6
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 5.3e-189 664.8 501 64.1
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 6.9e-189 664.5 479 65.3
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 9.0e-189 664.1 510 64.7
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 9.0e-189 664.1 483 66.3
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 9.0e-189 664.1 515 63.7
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 1.5e-188 663.3 517 63.6
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 1.3e-187 660.2 490 65.1
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 2.2e-187 659.4 508 62.8
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 4.9e-187 658.3 494 63.8
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 8.4e-187 657.5 512 64.5
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 1.4e-186 656.8 515 63.5
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 1.4e-186 656.8 477 66.7
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 1.9e-186 656.4 478 66.7
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 2.4e-186 656.0 496 64.3
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 3.2e-186 655.6 480 64.8
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 7.1e-186 654.4 550 63.6
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 7.1e-186 654.4 517 62.1
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 6.0e-185 651.4 508 62.6
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 7.9e-185 651.0 488 64.1
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 7.9e-185 651.0 495 65.1
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 9.6e-183 644.0 480 63.8
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 3.7e-182 642.1 457 67.6
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 6.2e-182 641.3 520 61.5
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 1.4e-181 640.2 512 61.3
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 5.3e-181 638.3 506 62.5
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 2.0e-180 636.3 493 62.5
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 3.0e-176 622.5 442 68.3
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 3.0e-176 622.5 508 60.0
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 1.0e-171 607.4 484 59.1
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 6.5e-171 604.7 572 54.4
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 1.1e-170 604.0 513 59.6
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 5.1e-168 595.1 430 66.5
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 7.4e-167 591.3 513 57.7
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 3.7e-166 589.0 477 60.0
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 2.6e-164 582.8 396 71.2
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 3.6e-161 572.4 406 68.2
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 5.1e-160 568.5 406 65.5
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 1.3e-158 563.9 405 66.9
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 3.5e-156 555.8 405 66.2
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 8.8e-152 541.2 405 64.2
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 3.8e-147 525.8 432 60.9
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 1.6e-145 520.4 527 52.2
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 1.8e-144 516.9 406 62.3
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 2.6e-143 513.1 484 57.0
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 6.5e-139 498.4 487 50.5
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 6.1e-137 491.9 406 61.1
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 1.8e-136 490.3 515 47.6
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 1.7e-134 483.8 455 56.0
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 3.7e-134 482.6 519 47.8
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 1.3e-131 474.2 297 75.8
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 2.0e-127 460.3 512 46.5
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 1.6e-124 450.7 354 61.9
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 7.8e-116 421.8 291 69.4
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 6.2e-113 412.1 355 58.3
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 1.2e-111 407.9 235 86.8
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 2.6e-111 406.8 339 59.3
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 4.4e-103 379.4 218 86.7
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 8.6e-99 365.2 308 58.4
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 1.7e-94 350.9 694 36.5
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 6.6e-91 339.0 491 40.9
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 6.6e-91 339.0 240 69.2
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 3.9e-83 313.2 492 40.2
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 3.6e-81 306.6 209 70.3
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 8.7e-75 285.4 497 36.2
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.3e-65 255.0 454 35.7
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 4.0e-64 250.0 196 64.8
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 5.3e-64 249.6 484 36.4
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 9.0e-64 248.8 192 59.9
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 5.1e-51 206.5 141 69.5
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 3.1e-48 197.2 398 34.9
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 8.5e-46 189.1 535 28.0
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 2.6e-39 167.5 467 28.5
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 8.5e-30 136.0 122 55.7
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.8e-27 128.3 91 65.9
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 9.1e-24 115.9 108 54.6
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 2.2e-22 111.3 66 71.2
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 6.1e-20 103.2 86 60.5
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 1.4e-19 102.1 74 68.9
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 3.1e-16 90.9 59 64.4
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 2.3e-14 84.7 79 54.4
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 3.8e-14 84.0 55 67.3
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 6.6e-14 83.2 105 41.9
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.1e-13 82.4 81 53.1
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 5.5e-13 80.1 531 24.7
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 1.2e-10 72.4 39 76.9
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 2.0e-10 71.6 53 62.3
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 7.5e-10 69.7 45 75.6
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.7e-09 67.4 81 44.4
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.7e-09 67.4 83 43.4
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 4.9e-09 67.0 82 43.9
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 8.6e-06 56.2 41 63.4
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 8.6e-06 56.2 41 63.4


User provided reference genes

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