Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 0.0e+00 1641.7 802 100.0
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 0.0e+00 1400.6 886 79.1
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 0.0e+00 1340.9 888 76.6
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 0.0e+00 1322.0 887 75.9
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 0.0e+00 1179.1 884 67.5
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 0.0e+00 1167.5 884 67.2
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 0.0e+00 1115.1 886 64.9
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 0.0e+00 1115.1 886 64.9
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 0.0e+00 1109.0 886 63.9
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 0.0e+00 1099.0 886 64.0
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 3.5e-301 1038.1 881 61.4
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 5.6e-291 1004.2 828 61.8
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 5.1e-260 901.4 926 53.3
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 2.1e-253 879.4 937 52.8
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 5.9e-240 834.7 885 52.5
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 3.2e-238 828.9 884 52.3
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 1.6e-237 826.6 885 51.2
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 8.0e-229 797.7 888 50.1
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.0e-228 797.3 868 50.8
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 1.8e-228 796.6 885 49.5
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 3.0e-228 795.8 891 50.3
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 4.0e-228 795.4 877 50.5
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 6.8e-228 794.7 877 50.5
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 8.9e-228 794.3 886 50.5
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 7.5e-227 791.2 875 50.2
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 1.8e-225 786.6 885 49.2
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 4.1e-225 785.4 887 50.5
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 7.8e-224 781.2 901 49.2
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 1.0e-223 780.8 891 48.9
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 5.0e-223 778.5 893 49.7
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.9e-222 776.5 893 47.5
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 3.3e-222 775.8 893 49.2
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 4.3e-222 775.4 893 49.5
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.1e-221 773.1 893 49.0
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 1.4e-220 770.4 891 48.4
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 9.8e-219 764.2 881 49.1
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 4.4e-211 738.8 882 47.8
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 9.8e-211 737.6 882 47.8
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 1.3e-210 737.3 891 46.8
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 1.7e-210 736.9 882 48.0
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 2.7e-208 729.6 900 47.6
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 3.9e-207 725.7 885 46.3
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 1.2e-205 720.7 884 46.8
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 6.2e-205 718.4 841 49.0
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 2.3e-204 716.5 893 46.0
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 6.4e-202 708.4 886 45.7
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.8e-196 690.3 906 45.0
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.8e-196 690.3 904 44.8
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 2.7e-192 676.4 888 44.1
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 2.7e-192 676.4 880 44.0
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 6.0e-192 675.2 878 44.4
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.0e-191 672.9 908 43.2
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.1e-190 671.0 835 47.7
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.9e-190 670.2 903 43.4
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 5.6e-190 668.7 850 45.4
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 5.6e-190 668.7 850 45.4
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 4.8e-189 665.6 874 43.9
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 1.5e-187 660.6 851 44.2
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 2.6e-187 659.8 849 44.4
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 2.6e-187 659.8 853 44.5
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 3.4e-187 659.4 924 44.0
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 7.6e-187 658.3 898 42.5
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 1.3e-186 657.5 845 43.9
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 2.2e-186 656.8 876 45.4
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.9e-186 656.4 911 42.4
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 3.8e-186 656.0 883 43.1
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 8.4e-186 654.8 871 44.8
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 4.2e-185 652.5 850 43.6
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 9.3e-185 651.4 847 43.7
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 4.6e-184 649.0 833 44.3
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 6.6e-183 645.2 875 43.1
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 1.1e-182 644.4 893 42.2
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.9e-182 643.7 881 42.2
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 2.1e-181 640.2 856 43.2
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 2.8e-181 639.8 886 44.8
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 8.1e-181 638.3 892 42.4
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 1.1e-180 637.9 834 43.6
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 9.9e-179 631.3 900 42.0
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 1.3e-178 630.9 832 43.4
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.7e-178 630.6 848 43.0
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 2.9e-178 629.8 841 43.3
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 2.9e-178 629.8 841 43.3
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 6.4e-178 628.6 877 42.9
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 3.2e-177 626.3 853 42.3
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 2.7e-176 623.2 884 42.9
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 1.9e-174 617.1 876 42.1
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 1.3e-173 614.4 858 41.6
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 2.1e-173 613.6 876 42.7
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 2.4e-172 610.1 747 47.3
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 7.6e-171 605.1 860 41.3
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 3.8e-170 602.8 876 41.6
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 8.4e-170 601.7 761 45.7
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 1.9e-169 600.5 626 52.4
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.2e-168 597.8 968 39.2
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 1.3e-167 594.3 624 52.6
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 6.7e-167 592.0 767 45.6
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 1.3e-165 587.8 805 41.6
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 2.8e-165 586.6 843 43.2
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 3.4e-163 579.7 923 39.4
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 4.2e-161 572.8 827 43.5
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 8.2e-157 558.5 868 39.5
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 1.1e-156 558.1 863 40.9
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 1.4e-151 541.2 625 48.8
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 7.4e-150 535.4 865 39.4
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 1.2e-144 518.1 791 41.5
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.5e-142 511.1 587 48.9
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 1.4e-140 504.6 551 51.4
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.8e-140 504.2 743 42.0
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 3.6e-136 490.0 828 38.8
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 6.3e-133 479.2 720 39.9
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 2.9e-130 470.3 577 46.8
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 2.6e-126 457.2 527 51.2
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.3e-125 454.9 609 43.2
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 1.1e-124 451.8 706 40.1
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 6.5e-122 442.6 682 40.0
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 6.1e-120 436.0 347 64.6
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 4.5e-115 419.9 652 38.5
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 1.1e-95 355.5 252 70.6
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 5.8e-94 349.7 588 37.4
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 9.8e-94 349.0 572 38.3
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 5.1e-90 336.7 517 40.6
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.2e-88 332.0 549 39.9
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.7e-85 321.6 386 47.2
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 1.0e-82 312.4 314 54.5
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 3.3e-81 307.4 627 32.7
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 8.9e-79 299.3 366 44.3
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 4.2e-76 290.4 676 32.1
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 4.8e-72 276.9 625 31.4
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 1.4e-71 275.4 664 29.7
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 4.4e-70 270.4 221 62.9
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 9.3e-68 262.7 491 39.7
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 4.3e-65 253.8 164 76.2
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 1.2e-62 245.7 499 32.9
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 4.9e-61 240.4 191 64.4
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 6.7e-58 229.9 164 70.1
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 3.3e-57 227.6 153 74.5
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 7.4e-57 226.5 153 73.9
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 1.3e-56 225.7 170 68.2
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 1.1e-52 212.6 185 59.5
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.7e-51 208.0 217 52.1
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 6.0e-51 206.8 174 59.2
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 6.0e-51 206.8 153 68.0
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 8.2e-48 196.4 123 78.9
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 1.1e-47 196.1 123 78.9
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 1.8e-47 195.3 162 59.9
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 3.1e-47 194.5 172 59.9
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 8.4e-45 186.4 267 41.9
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 4.6e-43 180.6 201 51.7
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 5.7e-41 173.7 181 53.0
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 7.7e-38 163.3 151 58.9
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.1e-36 159.5 148 57.4
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 7.2e-36 156.8 118 69.5
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 1.4e-34 152.5 193 43.5
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 2.3e-34 151.8 125 59.2
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 6.7e-34 150.2 181 45.3
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 2.5e-33 148.3 101 65.3
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 1.8e-31 142.1 281 34.9
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 5.3e-31 140.6 407 29.0
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 7.7e-30 136.7 114 55.3
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.5e-25 122.5 97 61.9
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.6e-25 121.7 97 61.9
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.1e-23 116.3 95 63.2
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 1.4e-23 115.9 704 21.4
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 2.0e-22 112.1 251 27.9
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 4.5e-22 110.9 82 63.4
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 2.7e-19 101.7 68 70.6
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 5.7e-17 94.0 322 24.2
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 3.5e-14 84.7 199 34.7
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 1.5e-12 79.3 71 57.7
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 1.9e-12 79.0 240 28.8
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 5.5e-12 77.4 58 67.2
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 9.4e-12 76.6 144 33.3
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 8.0e-11 73.6 67 59.7
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.3e-10 72.0 79 50.6
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 2.0e-09 68.9 57 57.9
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 2.6e-09 68.6 90 46.7
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 7.5e-09 67.0 62 59.7
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 7.5e-09 67.0 58 56.9
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 9.8e-09 66.6 49 59.2


User provided reference genes

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