Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G177325 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 7.7e-55 216.9 106 100.0
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 2.3e-38 162.2 133 67.7
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 2.3e-38 162.2 133 67.7
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 5.0e-38 161.0 133 66.9
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 5.0e-38 161.0 133 66.9
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 4.3e-37 157.9 133 65.4
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 4.3e-37 157.9 133 65.4
Ca_24184_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 4.3e-37 157.9 133 64.7
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 4.3e-37 157.9 133 65.4
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 5.6e-37 157.5 133 66.2
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 9.5e-37 156.8 133 64.7
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 9.5e-37 156.8 133 64.7
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 2.1e-36 155.6 133 63.9
Cpa.g.sc34.42 Carica papaya HOM05D003504 ORTHO05D004006 1.0e-35 153.3 133 63.2
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 1.0e-35 153.3 133 63.2
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 5.2e-35 151.0 133 61.7
Gohir.A12G174150 Gossypium hirsutum HOM05D003504 ORTHO05D004006 5.2e-35 151.0 133 61.7
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 5.2e-35 151.0 133 61.7
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 5.2e-35 151.0 133 61.7
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 8.9e-35 150.2 133 60.9
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 1.5e-34 149.4 133 60.9
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 1.5e-34 149.4 133 60.9
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 1.5e-34 149.4 133 60.2
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 2.0e-34 149.1 133 61.7
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 4.4e-34 147.9 133 59.4
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 5.7e-34 147.5 133 60.2
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 5.7e-34 147.5 133 60.2
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 5.7e-34 147.5 133 60.2
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 5.7e-34 147.5 133 60.2
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 7.5e-34 147.1 133 60.2
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 7.5e-34 147.1 133 60.2
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 7.5e-34 147.1 133 60.2
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 1.3e-33 146.4 139 57.6
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 1.3e-33 146.4 133 60.9
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 1.7e-33 146.0 133 59.4
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 2.9e-33 145.2 133 61.7
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 4.9e-33 144.4 133 59.4
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 4.9e-33 144.4 133 60.2
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 6.4e-33 144.1 133 60.2
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 8.3e-33 143.7 133 60.2
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 1.1e-32 143.3 133 59.4
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 1.4e-32 142.9 134 59.7
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 2.4e-32 142.1 135 59.3
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 3.2e-32 141.7 133 58.6
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 3.2e-32 141.7 135 58.5
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 3.2e-32 141.7 133 58.6
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 4.1e-32 141.4 135 57.8
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 7.0e-32 140.6 135 58.5
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 1.2e-31 139.8 134 59.0
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 1.2e-31 139.8 133 60.2
vmacro15992 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 2.0e-31 139.0 135 57.8
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 4.6e-31 137.9 134 58.2
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 7.8e-31 137.1 133 55.6
CSS0025770 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 1.3e-30 136.3 132 56.8
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 5.0e-30 134.4 135 55.6
Peaxi162Scf01205g00167 Petunia axillaris HOM05D003504 ORTHO05D004006 6.6e-30 134.0 133 55.6
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 8.6e-30 133.7 133 55.6
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 1.1e-29 133.3 133 55.6
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 1.1e-29 133.3 133 55.6
Nitab4.5_0001070g0090 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.9e-29 132.5 133 54.9
Nn1g07198 Nelumbo nucifera HOM05D003504 ORTHO05D004006 2.5e-29 132.1 133 54.9
Nitab4.5_0000348g0150 Nicotiana tabacum HOM05D003504 ORTHO05D004006 3.3e-29 131.7 85 76.5
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 4.3e-29 131.3 133 54.1
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 5.6e-29 131.0 133 54.1
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 7.3e-29 130.6 133 53.4
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 7.3e-29 130.6 133 54.9
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 9.5e-29 130.2 133 54.9
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 1.2e-28 129.8 133 52.6
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 4.7e-28 127.9 133 53.4
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 6.2e-28 127.5 133 52.6
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 1.0e-27 126.7 133 54.1
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 1.4e-27 126.3 133 56.4
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 2.3e-27 125.6 133 54.9
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 2.3e-27 125.6 133 55.6
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 3.1e-27 125.2 133 54.9
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 3.1e-27 125.2 133 54.9
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 3.1e-27 125.2 133 54.9
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 3.1e-27 125.2 133 54.9
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 3.1e-27 125.2 133 54.9
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 3.1e-27 125.2 133 54.9
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 3.1e-27 125.2 133 54.9
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 3.1e-27 125.2 133 54.9
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 3.1e-27 125.2 133 54.9
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 4.0e-27 124.8 133 50.4
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 4.0e-27 124.8 133 52.6
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 6.8e-27 124.0 133 54.9
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 6.8e-27 124.0 133 54.9
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 8.9e-27 123.6 133 51.1
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 1.2e-26 123.2 133 50.4
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 1.2e-26 123.2 133 54.1
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 1.5e-26 122.9 133 52.6
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 2.0e-26 122.5 133 53.4
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 3.4e-26 121.7 133 49.6
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 7.5e-26 120.6 133 54.1
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 7.5e-26 120.6 79 73.4
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 9.8e-26 120.2 134 54.5
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 2.2e-25 119.0 134 52.2
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 2.2e-25 119.0 133 48.9
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 3.7e-25 118.2 119 58.0
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 4.9e-25 117.9 127 54.3
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 1.9e-24 115.9 77 71.4
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 9.2e-24 113.6 133 49.6
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 6.0e-23 110.9 77 71.4
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 1.1e-21 106.7 133 46.6
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 7.1e-16 87.4 133 38.3
CAN.G83.10 Capsicum annuum HOM05D003504 ORTHO05D004006 4.3e-13 78.2 53 67.9
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 9.5e-13 77.0 96 51.0
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 3.1e-11 72.0 137 34.3
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 4.0e-11 71.6 142 35.2
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 6.4e-09 64.3 134 35.1
Lsat_1_v5_gn_7_41641 Lactuca sativa HOM05D003504 ORTHO05D004006 8.4e-09 63.9 44 68.2
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.4e-08 62.4 94 37.2
QL04p085886 Quercus lobata HOM05D003504 ORTHO05D004006 9.2e-08 60.5 57 56.1
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.7e-07 58.9 94 37.2
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 6.0e-07 57.8 94 37.2
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.3e-06 56.6 134 30.6
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.3e-06 55.8 134 29.1
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 3.0e-06 55.5 94 38.3


User provided reference genes

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