Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G172400 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 4.3e-46 187.6 90 100.0
Ca_24184_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 4.7e-21 104.4 49 95.9
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 4.7e-21 104.4 49 95.9
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 4.7e-21 104.4 49 95.9
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 4.7e-21 104.4 49 95.9
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 4.7e-21 104.4 49 95.9
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 4.7e-21 104.4 49 95.9
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 4.7e-21 104.4 49 95.9
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 4.7e-21 104.4 49 95.9
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 4.7e-21 104.4 49 95.9
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 1.4e-20 102.8 49 93.9
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 3.1e-20 101.7 49 91.8
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 8.9e-20 100.1 49 93.9
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 8.9e-20 100.1 49 93.9
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 8.9e-20 100.1 49 93.9
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 8.9e-20 100.1 49 93.9
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 8.9e-20 100.1 49 93.9
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 8.9e-20 100.1 49 93.9
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 8.9e-20 100.1 49 93.9
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 8.9e-20 100.1 49 93.9
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 8.9e-20 100.1 49 93.9
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 8.9e-20 100.1 49 93.9
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 8.9e-20 100.1 49 93.9
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 8.9e-20 100.1 49 93.9
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 8.9e-20 100.1 49 93.9
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.2e-19 99.8 49 93.9
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 7.6e-19 97.1 49 91.8
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 7.6e-19 97.1 49 91.8
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 7.6e-19 97.1 49 91.8
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 9.9e-19 96.7 47 93.6
Nitab4.5_0000348g0160 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.3e-18 96.3 50 88.0
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 2.2e-18 95.5 49 89.8
CSS0012196 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 2.2e-18 95.5 49 89.8
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 2.2e-18 95.5 49 87.8
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 2.2e-18 95.5 49 87.8
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 2.2e-18 95.5 49 87.8
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 2.2e-18 95.5 49 89.8
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 2.2e-18 95.5 49 89.8
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 2.2e-18 95.5 49 89.8
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 2.2e-18 95.5 49 89.8
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 2.2e-18 95.5 49 91.8
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 2.2e-18 95.5 49 87.8
vmacro15991 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 2.9e-18 95.1 48 91.7
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 2.9e-18 95.1 49 89.8
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 3.8e-18 94.7 50 88.0
Cpa.g.sc34.43 Carica papaya HOM05D003504 ORTHO05D004006 4.9e-18 94.4 49 87.8
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 4.9e-18 94.4 49 87.8
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 4.9e-18 94.4 49 89.8
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 6.4e-18 94.0 49 87.8
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 6.4e-18 94.0 49 89.8
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 6.4e-18 94.0 49 87.8
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 6.4e-18 94.0 49 89.8
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 1.1e-17 93.2 49 87.8
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 1.1e-17 93.2 49 87.8
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 1.1e-17 93.2 49 87.8
Nitab4.5_0001070g0090 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.1e-17 93.2 49 87.8
Peaxi162Scf01205g00192 Petunia axillaris HOM05D003504 ORTHO05D004006 1.1e-17 93.2 49 87.8
Solyc08g016060.1 Solanum lycopersicum HOM05D003504 ORTHO05D004006 1.1e-17 93.2 49 87.8
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 1.1e-17 93.2 49 87.8
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 1.1e-17 93.2 49 89.8
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 1.4e-17 92.8 49 87.8
Gohir.A12G174201 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.4e-17 92.8 49 87.8
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.4e-17 92.8 49 87.8
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.4e-17 92.8 49 87.8
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 1.4e-17 92.8 49 87.8
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 1.4e-17 92.8 49 87.8
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 2.4e-17 92.0 49 87.8
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 2.4e-17 92.0 49 87.8
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 2.4e-17 92.0 49 87.8
CDE09G0759 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 3.2e-17 91.7 49 85.7
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 4.2e-17 91.3 49 87.8
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 4.2e-17 91.3 49 85.7
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 4.2e-17 91.3 49 87.8
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 4.2e-17 91.3 49 87.8
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 4.2e-17 91.3 49 85.7
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 7.1e-17 90.5 48 87.5
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 9.2e-17 90.1 49 85.7
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 9.2e-17 90.1 49 85.7
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 9.2e-17 90.1 49 85.7
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 2.1e-16 89.0 49 81.6
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 2.1e-16 89.0 49 85.7
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 2.1e-16 89.0 49 85.7
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 2.7e-16 88.6 49 81.6
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 2.7e-16 88.6 49 81.6
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 2.7e-16 88.6 49 81.6
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 2.7e-16 88.6 49 81.6
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 2.7e-16 88.6 49 81.6
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 2.7e-16 88.6 49 81.6
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 2.7e-16 88.6 49 83.7
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 3.5e-16 88.2 49 83.7
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 3.5e-16 88.2 49 83.7
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 4.6e-16 87.8 49 83.7
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 4.6e-16 87.8 49 83.7
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 4.6e-16 87.8 49 81.6
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 6.0e-16 87.4 49 79.6
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 6.0e-16 87.4 49 79.6
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 6.0e-16 87.4 49 79.6
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 6.0e-16 87.4 49 79.6
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 1.0e-15 86.7 49 81.6
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 1.0e-15 86.7 49 79.6
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 1.0e-15 86.7 49 79.6
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 1.0e-15 86.7 49 79.6
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 1.3e-15 86.3 49 81.6
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 1.7e-15 85.9 49 81.6
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 3.9e-15 84.7 49 79.6
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 3.9e-15 84.7 49 81.6
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 3.9e-15 84.7 49 79.6
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 2.8e-13 78.6 49 73.5
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 1.1e-12 76.6 49 69.4
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.5e-11 72.8 49 67.3
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.6e-11 72.0 49 67.3
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 4.4e-11 71.2 49 67.3
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 4.4e-11 71.2 49 67.3
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 9.9e-11 70.1 49 67.3
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.3e-10 69.7 49 65.3
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.7e-10 69.3 50 68.0
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 7.1e-09 63.9 56 58.9
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.2e-08 63.2 50 62.0
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 4.3e-06 54.7 29 82.8


User provided reference genes

Program Settings