Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 0.0e+00 1098.6 559 100.0
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 1.4e-293 1012.3 552 93.3
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 1.2e-284 982.6 552 88.6
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 1.1e-282 976.1 553 89.5
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 3.3e-282 974.5 569 86.6
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 9.7e-282 973.0 552 88.4
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 1.1e-280 969.5 550 88.5
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 7.7e-279 963.4 569 86.3
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 2.2e-273 945.3 565 84.8
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 1.8e-272 942.2 548 86.3
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 4.8e-257 891.0 559 80.3
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 1.6e-255 885.9 568 78.7
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 2.8e-252 875.2 552 79.7
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 6.1e-252 874.0 569 78.2
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 5.7e-250 867.5 562 78.6
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 1.3e-249 866.3 565 77.2
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 1.3e-249 866.3 571 76.2
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 2.8e-249 865.1 569 77.5
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 4.1e-248 861.3 559 78.7
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.6e-247 859.4 570 76.0
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.7e-247 858.6 570 76.0
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 2.7e-247 858.6 566 77.9
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 1.0e-246 856.7 567 77.6
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 6.6e-246 854.0 566 77.6
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 1.5e-245 852.8 566 77.4
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 4.3e-245 851.3 551 78.8
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 2.1e-244 849.0 568 76.4
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 4.0e-243 844.7 569 76.4
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 4.0e-243 844.7 559 77.5
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 1.5e-242 842.8 552 76.6
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 3.4e-242 841.6 552 77.2
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 9.8e-242 840.1 570 74.9
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 1.7e-241 839.3 571 74.4
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 8.3e-241 837.0 570 75.8
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 1.8e-240 835.9 598 72.7
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 7.0e-240 833.9 569 74.0
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 2.0e-239 832.4 569 73.6
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 7.8e-239 830.5 569 73.3
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 6.6e-238 827.4 569 72.6
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 8.0e-236 820.5 566 74.0
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 2.0e-234 815.8 545 75.2
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 2.6e-234 815.5 550 74.7
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 1.3e-233 813.1 552 75.5
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 3.2e-232 808.5 550 74.2
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 3.2e-232 808.5 573 72.3
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 4.1e-232 808.1 550 73.6
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 2.7e-231 805.4 550 73.5
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 7.8e-231 803.9 576 72.2
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 3.0e-230 802.0 565 72.2
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 3.3e-229 798.5 571 70.9
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 2.8e-228 795.4 566 71.6
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 3.6e-228 795.0 545 73.6
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 3.7e-225 785.0 554 72.4
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 4.1e-224 781.6 552 72.8
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 3.5e-223 778.5 555 72.4
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 6.0e-223 777.7 555 72.3
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 7.8e-223 777.3 573 70.7
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 1.3e-222 776.5 573 71.0
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 1.3e-222 776.5 573 71.4
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 1.7e-222 776.2 588 68.9
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 2.3e-222 775.8 555 72.3
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 3.0e-222 775.4 555 72.1
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 3.0e-222 775.4 571 68.7
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 3.9e-222 775.0 573 70.3
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 1.1e-221 773.5 569 70.3
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 1.5e-221 773.1 571 70.6
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 4.0e-219 765.0 555 70.8
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 2.0e-218 762.7 547 71.3
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 7.6e-218 760.8 610 67.7
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 1.7e-217 759.6 557 70.0
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.1e-216 756.9 572 70.5
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 2.1e-215 752.7 554 70.8
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 4.6e-215 751.5 559 69.4
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 4.6e-215 751.5 560 69.1
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 1.0e-214 750.4 577 68.3
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 1.1e-213 746.9 547 70.6
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 3.3e-213 745.3 549 68.3
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 5.2e-211 738.0 587 66.1
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 5.8e-210 734.6 570 66.5
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 2.2e-209 732.6 539 71.4
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 1.4e-208 729.9 557 67.7
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 4.2e-208 728.4 587 66.4
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 2.3e-206 722.6 550 66.5
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 8.7e-206 720.7 605 65.6
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 1.6e-204 716.5 581 66.1
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 4.0e-203 711.8 569 65.0
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 2.9e-193 679.1 430 82.1
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 6.5e-185 651.4 495 68.1
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 8.2e-172 607.8 430 71.9
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 5.1e-166 588.6 691 50.4
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 2.5e-160 569.7 561 55.1
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 4.2e-160 568.9 552 56.0
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 6.1e-151 538.5 559 54.6
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 2.7e-146 523.1 569 50.8
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 6.8e-142 508.4 554 52.7
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 1.2e-122 444.5 324 71.0
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 5.6e-104 382.5 260 73.1
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 3.9e-97 359.8 275 66.5
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 5.6e-96 355.9 309 60.5
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 4.9e-92 342.8 222 78.4
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 4.6e-74 283.1 195 72.8
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 5.9e-53 213.0 163 65.6
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 3.8e-52 210.3 296 46.3
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 1.3e-47 195.3 115 87.0
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 2.6e-45 187.6 240 40.4
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 1.5e-40 171.8 147 60.5
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 3.3e-40 170.6 120 69.2
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 2.8e-39 167.5 116 72.4
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 9.1e-38 162.5 120 65.8
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 7.5e-32 142.9 182 48.4
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 6.3e-31 139.8 132 56.1
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 8.3e-23 112.8 85 62.4
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 9.1e-22 109.4 130 46.2
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.6e-21 108.6 179 40.2
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 1.1e-19 102.4 82 65.9
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.9e-19 101.7 189 38.1
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 5.4e-14 83.6 142 41.5
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 1.2e-13 82.4 122 41.0
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 2.1e-10 71.6 55 67.3
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 3.1e-09 67.8 45 68.9
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 3.1e-09 67.8 175 33.1
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 8.9e-09 66.2 96 40.6
Cpa.g.sc131.91 Carica papaya HOM05D006362 ORTHO05D116658 1.2e-08 65.9 37 83.8
Lsat_1_v5_gn_3_32440 Lactuca sativa HOM05D006362 ORTHO05D228842 2.6e-08 64.7 51 68.6
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 5.8e-08 63.5 208 29.3
SMO009G0006 Selaginella moellendorffii HOM05D013632 ORTHO05D379378 7.5e-08 63.2 141 34.8


User provided reference genes

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