Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 9.1e-63 243.4 125 100.0
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 6.3e-56 220.7 128 91.4
arahy.Tifrunner.gnm1.ann1.74ZUP2 Arachis hypogaea HOM05D005020 ORTHO05D006017 1.7e-16 89.7 146 43.2
arahy.Tifrunner.gnm1.ann1.M920DF Arachis hypogaea HOM05D005020 ORTHO05D006017 1.7e-16 89.7 146 43.2
Glyma.13G274200 Glycine max HOM05D005020 ORTHO05D006017 1.4e-15 86.7 79 60.8
Potri.001G396700 Populus trichocarpa HOM05D005020 ORTHO05D006017 1.7e-13 79.7 147 39.5
arahy.Tifrunner.gnm1.ann1.2XGW09 Arachis hypogaea HOM05D005020 ORTHO05D006017 3.0e-13 79.0 148 39.9
Sabra16G0259800 Salix brachista HOM05D005020 ORTHO05D006017 3.1e-10 68.9 51 66.7
Haze_09410 Corylus avellana HOM05D005020 ORTHO05D006017 2.0e-09 66.2 127 39.4
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 7.5e-09 64.3 138 36.2
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 7.5e-09 64.3 54 64.8
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 9.9e-09 63.9 54 66.7
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 1.3e-08 63.5 57 57.9
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 1.7e-08 63.2 55 65.5
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 2.2e-08 62.8 63 58.7
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 2.2e-08 62.8 57 57.9
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 2.2e-08 62.8 57 57.9
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 2.2e-08 62.8 57 57.9
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 2.9e-08 62.4 57 57.9
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 3.7e-08 62.0 57 57.9
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 4.9e-08 61.6 56 64.3
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 4.9e-08 61.6 57 59.6
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 6.4e-08 61.2 56 62.5
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 6.4e-08 61.2 57 61.4
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 6.4e-08 61.2 57 56.1
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 1.1e-07 60.5 60 58.3
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 1.1e-07 60.5 56 60.7
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 1.1e-07 60.5 56 60.7
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 1.1e-07 60.5 84 50.0
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 1.4e-07 60.1 61 55.7
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 1.4e-07 60.1 55 61.8
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.4e-07 60.1 55 61.8
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.4e-07 60.1 55 61.8
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.4e-07 60.1 55 61.8
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.4e-07 60.1 59 55.9
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.4e-07 60.1 59 55.9
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.4e-07 60.1 59 55.9
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 1.4e-07 60.1 56 60.7
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 1.4e-07 60.1 57 59.6
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 1.4e-07 60.1 56 60.7
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 1.9e-07 59.7 71 53.5
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 1.9e-07 59.7 56 60.7
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 1.9e-07 59.7 56 60.7
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.9e-07 59.7 56 60.7
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.9e-07 59.7 56 60.7
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.9e-07 59.7 56 60.7
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 1.9e-07 59.7 56 60.7
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 1.9e-07 59.7 56 60.7
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 1.9e-07 59.7 57 57.9
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 1.9e-07 59.7 56 60.7
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 2.4e-07 59.3 55 60.0
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 2.4e-07 59.3 55 60.0
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
MELO3C019403.2 Cucumis melo HOM05D005020 ORTHO05D006017 2.4e-07 59.3 163 34.4
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 2.4e-07 59.3 55 60.0
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 2.4e-07 59.3 55 60.0
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 2.4e-07 59.3 55 60.0
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 2.4e-07 59.3 51 62.7
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 2.4e-07 59.3 47 66.0
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 2.4e-07 59.3 56 58.9
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 3.2e-07 58.9 51 62.7
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 3.2e-07 58.9 51 62.7
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 3.2e-07 58.9 51 62.7
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 3.2e-07 58.9 51 62.7
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 3.2e-07 58.9 55 60.0
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 3.2e-07 58.9 51 62.7
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 3.2e-07 58.9 51 62.7
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 3.2e-07 58.9 50 62.0
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 3.2e-07 58.9 50 62.0
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 3.2e-07 58.9 55 60.0
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 3.2e-07 58.9 55 54.5
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 3.2e-07 58.9 46 65.2
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 3.2e-07 58.9 50 62.0
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 3.2e-07 58.9 50 62.0
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 3.2e-07 58.9 55 54.5
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 4.1e-07 58.5 63 52.4
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 4.1e-07 58.5 56 60.7
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 4.1e-07 58.5 55 60.0
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 5.4e-07 58.2 55 54.5
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 5.4e-07 58.2 55 54.5
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 5.4e-07 58.2 56 57.1
ClCG05G009260 Citrullus lanatus HOM05D005020 ORTHO05D006017 5.4e-07 58.2 164 35.4
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 5.4e-07 58.2 55 54.5
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 5.4e-07 58.2 55 54.5
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 5.4e-07 58.2 55 54.5
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 5.4e-07 58.2 50 60.0
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 5.4e-07 58.2 55 54.5
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 5.4e-07 58.2 55 54.5
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 5.4e-07 58.2 56 58.9
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 5.4e-07 58.2 55 60.0
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 7.1e-07 57.8 55 60.0
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 7.1e-07 57.8 65 52.3
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 7.1e-07 57.8 55 60.0
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 1.2e-06 57.0 55 56.4
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 1.2e-06 57.0 55 58.2
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 1.2e-06 57.0 56 58.9
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 1.2e-06 57.0 55 52.7
Sopen04g005240 Solanum pennellii HOM05D005020 ORTHO05D006017 1.2e-06 57.0 59 54.2
Sopen04g008480 Solanum pennellii HOM05D005020 ORTHO05D006017 1.2e-06 57.0 59 54.2
FAN06G3024 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.6e-06 56.6 55 58.2
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 1.6e-06 56.6 55 52.7
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 1.6e-06 56.6 45 66.7
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.6e-06 56.6 55 52.7
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.6e-06 56.6 55 52.7
Solyc04g010100.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 1.6e-06 56.6 57 56.1
Solyc04g016390.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 1.6e-06 56.6 57 56.1
PGSC0003DMG400011474 Solanum tuberosum HOM05D005020 ORTHO05D006017 1.6e-06 56.6 57 56.1
PGSC0003DMG400012700 Solanum tuberosum HOM05D005020 ORTHO05D006017 1.6e-06 56.6 57 56.1
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 2.1e-06 56.2 55 52.7
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 2.1e-06 56.2 50 58.0
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 2.7e-06 55.8 57 57.9
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 2.7e-06 55.8 57 57.9
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 2.7e-06 55.8 55 54.5
SMO164G0143 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 2.7e-06 55.8 56 57.1
Ca_29279_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 3.5e-06 55.5 57 54.4
CsaV3_3G019510 Cucumis sativus L. HOM05D005020 ORTHO05D006017 3.5e-06 55.5 155 36.1
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 3.5e-06 55.5 55 50.9
FvH4_7g00350 Fragaria vesca HOM05D005020 ORTHO05D006017 6.0e-06 54.7 55 56.4
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 7.8e-06 54.3 103 37.9
Duzib170G0405 Durio zibethinus HOM05D005020 ORTHO05D006017 7.8e-06 54.3 47 59.6
Pp3c25_230 Physcomitrium patens HOM05D005020 ORTHO05D006017 7.8e-06 54.3 55 52.7


User provided reference genes

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