Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 2132.8 1107 100.0
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1941.8 1129 89.7
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1939.9 1125 89.5
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1854.0 1133 85.3
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1813.1 1126 83.7
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1799.6 1124 82.7
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1784.2 1123 82.1
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1775.8 1127 82.3
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1726.1 1122 79.9
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1725.3 1124 80.3
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1551.6 1126 73.5
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1550.8 1134 71.7
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1543.1 1135 72.7
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1538.1 1129 71.5
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1530.0 1133 71.2
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1514.2 1138 70.9
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1505.7 1126 71.0
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1503.8 1147 69.8
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1502.3 1126 70.3
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1494.2 1127 69.7
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1491.5 1126 71.3
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1490.7 1128 69.6
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1490.3 1132 70.0
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1489.9 1130 69.2
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1483.0 1141 69.5
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1481.1 1132 69.8
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1479.2 1138 70.4
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1474.1 1142 68.2
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1469.1 1139 69.0
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1468.4 1132 68.8
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1465.3 1124 68.8
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1455.3 1154 67.5
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1452.2 1136 68.8
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1449.1 1125 67.6
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1448.3 1126 68.3
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1447.6 1135 68.5
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1444.5 1131 68.0
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1444.1 1124 68.1
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1442.6 1125 67.8
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1442.2 1129 68.3
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1425.6 1124 67.3
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1409.4 1137 66.4
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1403.7 930 79.0
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1401.0 1120 66.8
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1400.2 929 78.8
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1400.2 1152 64.8
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1396.3 1136 67.0
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1391.7 1136 65.3
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1386.7 1134 65.4
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1375.1 1138 65.8
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1370.5 1135 66.0
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1366.7 1136 65.7
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1365.9 1139 65.6
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1362.8 1135 65.9
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1358.2 1086 65.7
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1356.7 1146 64.3
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1349.3 1137 65.3
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1346.6 1143 64.6
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1344.3 1137 63.8
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1339.3 1137 64.8
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1338.6 1136 65.2
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1333.9 1088 64.2
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1333.2 1130 63.7
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1328.9 1085 63.9
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1328.5 1143 64.5
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1318.9 1084 66.3
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1313.5 1133 63.2
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1310.4 1150 61.4
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1301.6 1176 60.5
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1297.0 1112 64.4
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1296.6 1091 63.6
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1292.7 1152 61.4
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1286.6 1085 64.1
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1275.0 1085 64.0
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1270.4 1110 61.5
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1263.8 1086 63.1
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1261.1 1078 62.5
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1260.7 1088 62.9
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1258.8 1109 60.9
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1252.3 1140 60.4
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1251.5 1087 62.8
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1236.5 1082 63.3
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1217.6 1138 59.4
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1212.2 1094 59.8
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1206.4 1011 65.8
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1205.7 1087 59.8
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1178.3 1084 58.9
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1159.8 1282 52.7
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1154.8 1136 57.6
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1134.4 1086 58.0
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 0.0e+00 1123.2 1019 62.2
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 0.0e+00 1116.7 1121 57.1
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1110.1 1091 57.2
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1109.7 949 63.4
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 0.0e+00 1104.0 962 63.2
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 0.0e+00 1089.7 1105 55.9
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1083.6 1362 48.8
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 5.3e-311 1071.2 1049 56.8
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 1.1e-284 983.8 926 58.6
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.2e-283 980.3 1035 55.1
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.5e-281 973.4 1022 56.1
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 3.3e-265 919.1 891 59.4
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 2.9e-245 852.8 799 62.6
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 2.1e-227 793.5 1131 41.7
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 3.0e-226 789.6 1124 41.9
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 3.1e-223 779.6 887 54.1
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 7.7e-222 775.0 704 58.7
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 2.2e-221 773.5 1129 42.6
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 2.7e-219 766.5 1094 41.7
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 6.1e-219 765.4 1125 42.0
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 1.6e-211 740.7 979 48.4
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 1.8e-210 737.3 895 51.7
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 5.9e-206 722.2 796 53.8
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 5.5e-196 689.1 1038 39.5
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 1.8e-191 674.1 674 56.1
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.6e-190 671.0 517 65.6
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 8.6e-189 665.2 645 59.2
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 3.0e-173 613.6 421 75.1
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 6.6e-173 612.5 524 61.1
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.1e-172 611.7 421 75.1
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 3.2e-151 540.4 522 55.2
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 2.4e-130 471.1 401 63.1
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 1.2e-126 458.8 482 54.6
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 4.8e-115 420.2 328 67.1
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 6.3e-107 393.3 228 82.0
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 8.5e-104 382.9 830 33.3
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 2.7e-102 377.9 622 41.3
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 2.7e-102 377.9 343 58.6
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 1.0e-93 349.4 351 53.8
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 6.5e-88 330.1 186 81.7
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 7.0e-82 310.1 354 52.5
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 5.0e-80 303.9 234 71.4
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 8.5e-80 303.1 1049 25.5
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 3.5e-73 281.2 194 72.2
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 1.3e-67 262.7 193 71.0
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 2.2e-67 261.9 1240 22.8
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 1.4e-66 259.2 141 89.4
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 2.4e-66 258.5 515 35.7
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 3.2e-66 258.1 141 86.5
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 3.9e-64 251.1 142 83.8
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 1.0e-61 243.0 244 54.5
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 7.0e-58 230.3 250 51.6
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 7.5e-52 210.3 539 33.0
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 3.7e-51 208.0 118 83.9
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 1.1e-50 206.5 116 85.3
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 5.4e-50 204.1 116 84.5
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 4.6e-49 201.1 166 64.5
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 4.6e-49 201.1 166 64.5
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 2.6e-44 185.3 133 73.7
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 1.4e-42 179.5 145 62.8
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 5.4e-42 177.6 140 68.6
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 8.1e-38 163.7 130 70.0
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 6.9e-37 160.6 83 92.8
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 8.9e-37 160.2 82 90.2
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 3.4e-36 158.3 133 65.4
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 9.9e-36 156.8 1164 20.9
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 1.1e-34 153.3 134 64.2
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 3.2e-34 151.8 191 50.8
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 2.1e-33 149.1 83 83.1
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 6.2e-30 137.5 110 64.5
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 6.9e-29 134.0 165 49.7
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 2.6e-28 132.1 170 46.5
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 9.9e-28 130.2 112 58.9
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 2.2e-27 129.0 153 47.7
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.1e-26 126.7 134 50.7
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 2.7e-25 122.1 115 60.9
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.9e-24 118.2 88 72.7
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 1.4e-21 109.8 98 62.2
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 1.7e-19 102.8 85 57.6
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 1.4e-18 99.8 95 57.9
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 1.6e-17 96.3 73 60.3
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 1.2e-12 80.1 49 83.7
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.7e-11 76.3 102 45.1
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 3.0e-08 65.5 43 65.1
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 2.5e-07 62.4 45 62.2
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 2.1e-06 59.3 48 64.6


User provided reference genes

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