Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G059600 Phaseolus vulgaris HOM05D002268 ORTHO05D006937 1.0e-295 1019.2 489 100.0
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 2.0e-275 951.8 480 95.4
Glyma.11G133500 Glycine max HOM05D002268 ORTHO05D006937 1.7e-274 948.7 489 92.8
Ca_11284_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 5.5e-249 864.0 488 85.5
Ca_30227_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 5.5e-249 864.0 488 85.5
Lj3g0006923 Lotus japonicus HOM05D002268 ORTHO05D006937 2.9e-242 841.6 489 84.7
Psat7g212760 Pisum sativum HOM05D002268 ORTHO05D006937 7.3e-241 837.0 487 83.0
Medtr4g065023 Medicago truncatula HOM05D002268 ORTHO05D006937 8.0e-232 807.0 485 80.8
Lalb_Chr19g0138111 Lupinus albus HOM05D002268 ORTHO05D006937 3.1e-231 805.1 504 78.8
arahy.Tifrunner.gnm1.ann1.02894U Arachis hypogaea HOM05D002268 ORTHO05D006937 5.8e-230 800.8 493 81.3
arahy.Tifrunner.gnm1.ann1.8VL3CN Arachis hypogaea HOM05D002268 ORTHO05D006937 1.7e-229 799.3 496 81.5
arahy.Tifrunner.gnm1.ann1.6XYC84 Arachis hypogaea HOM05D002268 ORTHO05D006937 4.9e-229 797.7 504 80.4
arahy.Tifrunner.gnm1.ann1.VSBS4R Arachis hypogaea HOM05D002268 ORTHO05D006937 8.6e-226 786.9 495 80.2
arahy.Tifrunner.gnm1.ann1.AYE0CN Arachis hypogaea HOM05D002268 ORTHO05D006937 9.5e-225 783.5 489 79.8
TPR.G35035 Trifolium pratense HOM05D002268 ORTHO05D006937 1.6e-224 782.7 490 78.8
QL01p004788 Quercus lobata HOM05D002268 ORTHO05D006937 9.9e-214 746.9 433 81.5
Haze_23130 Corylus avellana HOM05D002268 ORTHO05D006937 2.4e-212 742.3 486 75.7
CsaV3_4G024220 Cucumis sativus L. HOM05D002268 ORTHO05D006937 9.3e-212 740.3 484 76.4
MELO3C014598.2 Cucumis melo HOM05D002268 ORTHO05D006937 6.0e-211 737.6 485 75.7
GSVIVG01025274001 Vitis vinifera HOM05D002268 ORTHO05D006937 1.3e-210 736.5 427 81.5
Prupe.5G028600 Prunus persica HOM05D002268 ORTHO05D006937 3.3e-209 731.9 457 78.3
Nn7g36125 Nelumbo nucifera HOM05D002268 ORTHO05D006937 4.8e-208 728.0 479 74.3
Nitab4.5_0006994g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006937 8.1e-208 727.2 411 82.5
Cpa.g.sc84.62 Carica papaya HOM05D002268 ORTHO05D006937 1.4e-207 726.5 421 81.0
CiPaw.14G119300 Carya illinoinensis HOM05D002268 ORTHO05D006937 1.8e-207 726.1 474 74.5
Rhsim01G0191500 Rhododendron simsii HOM05D002268 ORTHO05D006937 1.5e-206 723.0 481 75.9
Nitab4.5_0005819g0070 Nicotiana tabacum HOM05D002268 ORTHO05D006937 2.6e-206 722.2 473 74.8
Sed0017829 Sechium edule HOM05D002268 ORTHO05D006937 4.4e-206 721.5 472 74.8
TWI60G0297 Tripterygium wilfordii HOM05D002268 ORTHO05D006937 1.7e-205 719.5 450 76.2
vmacro19340 Vaccinium macrocarpon HOM05D002268 ORTHO05D006937 3.8e-205 718.4 458 76.6
Atru.chr3.2733 Acer truncatum HOM05D002268 ORTHO05D006937 8.4e-205 717.2 419 81.4
Gorai.009G073000 Gossypium raimondii HOM05D002268 ORTHO05D006937 8.4e-205 717.2 460 75.9
COL.COLO4_24897 Corchorus olitorius HOM05D002268 ORTHO05D006937 1.4e-204 716.5 466 74.7
ClCG02G023280 Citrullus lanatus HOM05D002268 ORTHO05D006937 7.1e-204 714.1 492 73.2
Duzib168G2040 Durio zibethinus HOM05D002268 ORTHO05D006937 7.1e-204 714.1 468 74.4
MD03G1176400 Malus domestica HOM05D002268 ORTHO05D006937 2.7e-203 712.2 439 77.7
Solyc09g074100.4 Solanum lycopersicum HOM05D002268 ORTHO05D006937 4.6e-203 711.4 411 80.5
PGSC0003DMG400003844 Solanum tuberosum HOM05D002268 ORTHO05D006937 4.6e-203 711.4 411 80.8
BcaB02g11231 Brassica carinata HOM05D002268 ORTHO05D006937 7.9e-203 710.7 471 73.0
MD11G1196700 Malus domestica HOM05D002268 ORTHO05D006937 1.7e-202 709.5 460 75.0
Sc16g0011510 Simmondsia chinensis HOM05D002268 ORTHO05D006937 1.7e-202 709.5 450 76.7
Gohir.D05G072000 Gossypium hirsutum HOM05D002268 ORTHO05D006937 2.3e-202 709.1 460 75.0
PGR102G0832 Punica granatum HOM05D002268 ORTHO05D006937 8.7e-202 707.2 448 75.4
Sopen09g028920 Solanum pennellii HOM05D002268 ORTHO05D006937 8.7e-202 707.2 411 80.3
DCAR_000723 Daucus carota HOM05D002268 ORTHO05D006937 1.1e-201 706.8 462 74.9
Ah.04g161910 Amaranthus hybridus HOM05D002268 ORTHO05D006937 1.5e-201 706.4 419 80.2
CAN.G956.10 Capsicum annuum HOM05D002268 ORTHO05D006937 1.9e-201 706.1 411 79.3
EL10Ac4g10259 Beta vulgaris HOM05D002268 ORTHO05D006937 4.3e-201 704.9 432 78.2
EL10Ac4g10275 Beta vulgaris HOM05D002268 ORTHO05D006937 4.3e-201 704.9 432 78.2
AUR62019294 Chenopodium quinoa HOM05D002268 ORTHO05D006937 7.3e-201 704.1 403 81.4
Oeu043297.4 Olea europaea HOM05D002268 ORTHO05D006937 7.3e-201 704.1 465 74.8
Sp1g37990 Schrenkiella parvula HOM05D002268 ORTHO05D006937 1.3e-200 703.4 412 80.3
Migut.N02313 Erythranthe guttata HOM05D002268 ORTHO05D006937 2.8e-200 702.2 476 72.1
Cc09_g04150 Coffea canephora HOM05D002268 ORTHO05D006937 4.8e-200 701.4 468 72.4
Lj2A631G13 Lonicera japonica HOM05D002268 ORTHO05D006937 4.8e-200 701.4 507 68.8
Potri.001G259000 Populus trichocarpa HOM05D002268 ORTHO05D006937 6.2e-200 701.0 451 73.8
Thhalv10011432m.g Eutrema salsugineum HOM05D002268 ORTHO05D006937 1.4e-199 699.9 475 71.4
A08p02940 Brassica napus HOM05D002268 ORTHO05D006937 4.0e-199 698.4 451 75.6
BraA08t32327Z Brassica rapa HOM05D002268 ORTHO05D006937 1.5e-198 696.4 451 75.4
Aa31LG10G3500 Aethionema arabicum HOM05D002268 ORTHO05D006937 2.0e-198 696.0 466 73.0
Carub.0001s4017 Capsella rubella HOM05D002268 ORTHO05D006937 4.5e-198 694.9 426 77.2
AL1G59110 Arabidopsis lyrata HOM05D002268 ORTHO05D006937 5.8e-198 694.5 428 76.4
BcaC01g01260 Brassica carinata HOM05D002268 ORTHO05D006937 9.9e-198 693.7 457 73.7
AT1G51310 Arabidopsis thaliana HOM05D002268 ORTHO05D006937 1.7e-197 693.0 426 76.5
CARHR041380 Cardamine hirsuta HOM05D002268 ORTHO05D006937 2.9e-197 692.2 425 77.2
Carub.0008s0647 Capsella rubella HOM05D002268 ORTHO05D006937 3.8e-197 691.8 472 71.0
C03p89920 Brassica napus HOM05D002268 ORTHO05D006937 6.4e-197 691.0 457 73.5
BolC3t21311H Brassica oleracea HOM05D002268 ORTHO05D006937 6.4e-197 691.0 457 73.5
Eucgr.B03681 Eucalyptus grandis HOM05D002268 ORTHO05D006937 6.4e-197 691.0 400 81.8
Lsat_1_v5_gn_2_97721 Lactuca sativa HOM05D002268 ORTHO05D006937 1.9e-196 689.5 490 70.6
Aqoxy1G00300 Aquilegia oxysepala HOM05D002268 ORTHO05D006937 7.1e-196 687.6 416 78.4
SalBow5G0100 Salvia bowleyana HOM05D002268 ORTHO05D006937 3.5e-195 685.3 483 69.8
Hma1.2p1_0861F.1_g229700 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 7.9e-195 684.1 449 75.7
HanXRQChr07g0197481 Helianthus annuus HOM05D002268 ORTHO05D006937 1.1e-193 680.2 432 75.9
RcHm_v2.0_Chr7g0231131 Rosa chinensis HOM05D002268 ORTHO05D006937 7.4e-193 677.6 464 72.8
Actinidia06337 Actinidia chinensis HOM05D002268 ORTHO05D006937 1.3e-192 676.8 395 82.3
HPP92_009580 Vanilla planifolia HOM05D002268 ORTHO05D006937 1.1e-191 673.7 440 73.0
PSO339G2995 Papaver somniferum HOM05D002268 ORTHO05D006937 4.0e-191 671.8 426 76.3
PSO384G3396 Papaver somniferum HOM05D002268 ORTHO05D006937 6.9e-191 671.0 444 73.9
FAN18G3947 Fragaria x ananassa HOM05D002268 ORTHO05D006937 1.5e-190 669.8 468 70.1
MBI04_g17077_MAGBIO Magnolia biondii HOM05D002268 ORTHO05D006937 3.4e-190 668.7 486 67.7
Os03g0174600 Oryza sativa ssp. japonica HOM05D002268 ORTHO05D006937 5.8e-190 667.9 452 70.8
FvH4_5g33050 Fragaria vesca HOM05D002268 ORTHO05D006937 7.6e-190 667.5 466 70.0
ECA238G2081 Erigeron canadensis HOM05D002268 ORTHO05D006937 1.7e-189 666.4 488 67.4
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 2.5e-188 662.5 457 71.3
ATR0605G089 Amborella trichopoda HOM05D002268 ORTHO05D006937 5.5e-188 661.4 399 77.4
Zm00001eb005670 Zea mays HOM05D002268 ORTHO05D006937 1.0e-186 657.1 456 68.6
A05p19700 Brassica napus HOM05D002268 ORTHO05D006937 5.7e-185 651.4 426 74.4
Sabra16G0158600 Salix brachista HOM05D002268 ORTHO05D006937 8.2e-184 647.5 462 68.6
Manes.06G165000 Manihot esculenta HOM05D002268 ORTHO05D006937 1.1e-183 647.1 414 76.1
CSS0013347 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.3e-181 640.2 369 82.4
SGA_v2.0_scaffold42G16104 Striga asiatica HOM05D002268 ORTHO05D006937 8.4e-181 637.5 471 67.9
BcaC05g27353 Brassica carinata HOM05D002268 ORTHO05D006937 7.9e-171 604.4 362 78.2
CDE04G2511 Ceratophyllum demersum HOM05D002268 ORTHO05D006937 4.3e-169 598.6 416 70.7
Hund22033 Selenicereus undatus HOM05D002268 ORTHO05D006937 2.8e-168 595.9 605 55.2
Glyma.12G057700 Glycine max HOM05D002268 ORTHO05D006937 5.3e-167 591.7 315 90.2
BolC5t32017H Brassica oleracea HOM05D002268 ORTHO05D006937 3.2e-164 582.4 471 63.7
Thecc.09G232700 Theobroma cacao HOM05D002268 ORTHO05D006937 8.8e-162 574.3 394 72.6
Lsat_1_v5_gn_2_132680 Lactuca sativa HOM05D002268 ORTHO05D006937 4.2e-156 555.4 399 68.2
CSS0030827 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 5.2e-154 548.5 441 64.4
C05p32860 Brassica napus HOM05D002268 ORTHO05D006937 1.5e-153 547.0 450 62.7
Pp3c15_1840 Physcomitrium patens HOM05D002268 ORTHO05D006937 8.5e-141 504.6 439 59.0
SEGI_13867 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 1.4e-138 497.3 376 64.1
SMO331G0070 Selaginella moellendorffii HOM05D002268 ORTHO05D006937 7.5e-137 491.5 380 62.6
Dinv22182 Davidia involucrata HOM05D002268 ORTHO05D006937 3.1e-135 486.1 257 87.2
Ciclev10006706m.g Citrus clementina HOM05D002268 ORTHO05D006937 5.4e-135 485.3 497 55.7
Mapoly0129s0019 Marchantia polymorpha HOM05D002268 ORTHO05D006937 1.6e-134 483.8 404 59.9
Hma1.2p1_0861F.1_g229710 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 2.5e-132 476.5 273 82.4
AagrBONN_evm.TU.Sc2ySwM_340.361 Anthoceros agrestis HOM05D002268 ORTHO05D006937 3.6e-131 472.6 402 58.0
TAR369G0718 Trochodendron aralioides HOM05D002268 ORTHO05D006937 2.3e-130 469.9 273 81.3
FAN08G3580 Fragaria x ananassa HOM05D002268 ORTHO05D006937 1.4e-122 444.1 320 68.1
Peaxi162Scf00004g00224 Petunia axillaris HOM05D002268 ORTHO05D006937 1.1e-119 434.5 251 80.9
MCO02G416 Micromonas commoda HOM05D002268 ORTHO05D006937 2.4e-119 433.3 436 52.3
FAN04G1610 Fragaria x ananassa HOM05D002268 ORTHO05D006937 6.2e-115 418.7 320 64.7
PRCOL_00001138 Prasinoderma coloniale HOM05D002268 ORTHO05D006937 4.4e-113 412.5 377 55.4
Actinidia26439 Actinidia chinensis HOM05D002268 ORTHO05D006937 6.0e-102 375.6 236 77.1
Cre14.g628000 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D006937 3.0e-101 373.2 539 40.4
AagrBONN_evm.TU.Sc2ySwM_368.606 Anthoceros agrestis HOM05D002268 ORTHO05D006937 8.6e-101 371.7 364 52.5
CBR_g40742 Chara braunii HOM05D002268 ORTHO05D006937 1.5e-92 344.4 401 47.6
Gohir.A05G069100 Gossypium hirsutum HOM05D002268 ORTHO05D006937 3.4e-89 333.2 255 66.3
BcaB04g17220 Brassica carinata HOM05D002268 ORTHO05D006937 1.6e-70 271.2 175 73.7
unitig_21.g20901 Utricularia gibba HOM05D002268 ORTHO05D006937 4.6e-70 269.6 200 65.0
unitig_21.g20902 Utricularia gibba HOM05D002268 ORTHO05D007950 6.0e-70 269.2 190 68.4
MSTRG.17590 Avicennia marina HOM05D002268 ORTHO05D006937 2.7e-54 217.2 220 54.1
Hma1.2p1_0861F.1_g229720 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 1.1e-52 211.8 140 73.6
CBR_g19922 Chara braunii HOM05D002268 ORTHO05D021278 9.7e-52 208.8 312 38.1
C03p89950 Brassica napus HOM05D002268 ORTHO05D001336 5.3e-50 203.0 184 57.1
BcaC01g01262 Brassica carinata HOM05D002268 ORTHO05D006937 5.9e-49 199.5 289 41.2
AagrBONN_evm.TU.Sc2ySwM_117.3752 Anthoceros agrestis HOM05D002268 ORTHO05D021278 1.4e-47 194.9 355 34.9
Pp3c4_6690 Physcomitrium patens HOM05D002268 ORTHO05D021278 2.5e-47 194.1 397 32.5
CSS0037797 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 3.6e-46 190.3 112 77.7
BolC3t21314H Brassica oleracea HOM05D002268 ORTHO05D006937 1.8e-45 188.0 184 54.3
PRCOL_00001597 Prasinoderma coloniale HOM05D002268 ORTHO05D021278 2.2e-43 181.0 400 32.2
Mapoly0010s0199 Marchantia polymorpha HOM05D002268 ORTHO05D021278 3.1e-42 177.2 398 30.9
MCO12G105 Micromonas commoda HOM05D002268 ORTHO05D021278 2.0e-41 174.5 299 37.5
SEGI_07269 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 4.5e-41 173.3 143 61.5
BraA05t20874Z Brassica rapa HOM05D002268 ORTHO05D006937 3.3e-36 157.1 87 86.2
Lsat_1_v5_gn_1_117501 Lactuca sativa HOM05D002268 ORTHO05D006937 1.3e-32 145.2 74 86.5
C03p89940 Brassica napus HOM05D002268 ORTHO05D040778 3.4e-28 130.6 117 59.0
BolC3t21313H Brassica oleracea HOM05D002268 ORTHO05D040778 3.1e-26 124.0 113 58.4
MELO3C029180.2 Cucumis melo HOM05D002268 ORTHO05D168145 1.6e-25 121.7 258 34.5
Nn3g21873 Nelumbo nucifera HOM05D002268 ORTHO05D006937 5.0e-24 116.7 98 63.3
SEGI_39418 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 1.2e-20 105.5 133 43.6
A08p02920 Brassica napus HOM05D002268 ORTHO05D099342 3.1e-18 97.4 99 52.5
MELO3C032733.2 Cucumis melo HOM05D002268 ORTHO05D170637 1.2e-12 79.0 98 46.9
Duzib150G1137 Durio zibethinus HOM05D002268 ORTHO05D006937 4.4e-12 77.0 49 77.6
MELO3C035704.2 Cucumis melo HOM05D002268 ORTHO05D166817 2.0e-09 68.2 146 31.5
Actinidia23968 Actinidia chinensis HOM05D002268 ORTHO05D006937 1.5e-07 62.0 36 86.1
QL06p040831 Quercus lobata HOM05D002268 ORTHO05D006937 6.2e-06 56.6 31 77.4


User provided reference genes

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