Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 3832.0 1961 100.0
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 3384.3 1967 87.8
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 2990.7 1968 78.3
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 2962.6 1966 77.4
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 2941.8 1966 77.2
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 2931.4 1975 77.0
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 2911.3 2055 73.6
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 2843.9 2064 72.0
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 2778.8 1973 73.4
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 2738.8 1973 72.7
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 2664.8 1965 71.2
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 2326.6 1979 62.7
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 2323.5 1980 61.9
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 2309.6 2053 60.6
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2233.0 1987 60.2
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 2193.3 1979 59.2
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 2171.4 1970 58.5
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 2167.1 1985 57.7
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 2161.3 1985 58.2
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 2156.7 1992 58.7
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2151.7 1982 58.3
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2151.3 1986 57.6
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 2138.6 1974 57.0
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 2131.7 1984 56.5
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 2115.1 1993 57.5
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 2111.6 1982 57.7
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 2104.7 1983 57.2
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 2102.4 2007 57.1
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2101.6 1984 57.3
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2095.9 1985 57.1
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 2090.5 1971 56.2
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 2081.2 1985 56.9
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 2063.1 2000 55.8
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 2061.2 2080 53.8
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2029.6 2194 52.1
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1991.9 1983 54.4
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 1965.7 2007 54.5
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1956.0 1789 57.5
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1906.3 1974 52.6
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1901.7 1976 51.7
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1898.2 1975 50.5
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1894.0 2041 50.8
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1890.2 1970 52.0
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1883.6 1973 52.2
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1879.8 1995 52.2
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1872.1 1995 52.1
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1866.3 1974 51.6
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1849.3 1976 50.5
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1845.9 1975 50.7
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1842.8 1976 50.5
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1830.5 1978 49.9
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1829.7 1981 50.0
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1829.3 1981 49.8
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1828.9 1988 50.3
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1826.2 1978 50.0
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1825.4 1971 49.8
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1825.1 1972 50.3
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1825.1 1976 50.8
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1781.9 2026 49.5
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1781.1 2011 49.3
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1766.1 1982 49.7
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1759.2 2095 47.1
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1750.3 1982 48.6
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1748.0 1970 49.5
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1747.6 1947 49.2
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1743.4 2186 46.0
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1741.1 1980 48.4
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1733.0 2021 47.9
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1692.6 1977 48.7
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1692.2 2024 47.4
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1669.4 1969 47.2
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1666.7 1841 49.6
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1665.2 1733 52.2
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1630.5 1979 47.9
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1577.4 2000 45.6
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1421.4 1971 43.8
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1417.9 1394 55.7
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1340.1 1500 51.0
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1331.6 1366 55.3
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1312.4 1401 52.9
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1272.3 2310 37.7
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1258.0 1263 55.7
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 0.0e+00 1115.9 2010 36.6
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 2.1e-286 990.3 1239 46.2
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 4.0e-274 949.5 2063 31.7
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 2.3e-269 933.7 2087 30.9
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 1.1e-268 931.4 1225 44.2
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 2.0e-249 867.5 783 57.2
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 2.3e-245 854.0 2078 29.1
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 1.1e-244 851.7 1014 47.9
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 7.4e-244 849.0 1095 44.8
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 2.0e-228 797.7 665 63.0
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 7.7e-225 785.8 710 58.6
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 1.5e-220 771.5 586 64.5
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.0e-192 679.1 1471 31.4
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.6e-190 671.8 747 50.7
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 6.2e-190 669.8 1333 35.0
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 8.3e-187 659.4 414 82.4
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 2.1e-185 654.8 743 48.6
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 9.5e-183 646.0 844 41.8
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 1.6e-177 628.6 335 90.7
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 4.9e-171 607.1 475 65.1
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 7.3e-167 593.2 735 45.6
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 1.5e-159 568.9 712 44.5
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 9.0e-157 559.7 793 45.9
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.1e-146 526.2 510 57.3
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 3.3e-135 488.0 2188 23.4
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 5.5e-130 470.7 767 39.2
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 1.7e-126 459.1 506 48.4
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 5.0e-115 421.0 391 58.3
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.0e-111 409.1 737 36.4
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 1.3e-110 406.4 608 41.3
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 3.0e-88 332.0 658 34.8
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.9e-78 298.9 642 33.3
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 3.9e-67 261.9 202 62.9
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 7.3e-66 257.7 215 58.6
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 3.0e-59 235.7 474 31.9
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 9.9e-55 220.7 179 62.6
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 4.3e-50 205.3 237 52.3
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 1.3e-49 203.8 209 53.6
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 3.5e-44 185.7 346 36.4
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 4.6e-44 185.3 137 65.7
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 5.6e-42 178.3 584 28.1
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 2.1e-41 176.4 132 65.2
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 4.9e-38 165.2 143 56.6
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.3e-35 157.1 125 60.0
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.1e-34 154.1 100 73.0
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 1.5e-34 153.7 110 74.5
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.8e-33 149.4 411 29.7
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 2.5e-29 136.3 94 70.2
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 7.1e-29 134.8 571 25.4
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 2.1e-28 133.3 91 70.3
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 1.3e-27 130.6 146 51.4
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.5e-26 126.3 149 49.7
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 3.1e-24 119.4 90 62.2
Glyma.19G036450 Glycine max HOM05D004110 ORTHO05D004810 2.0e-23 116.7 67 82.1
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 1.3e-22 114.0 99 56.6
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 1.1e-21 110.9 71 76.1
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 1.4e-21 110.5 115 50.4
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 1.4e-21 110.5 127 43.3
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 2.5e-21 109.8 102 61.8
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 1.2e-20 107.5 138 46.4
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 1.8e-19 103.6 122 41.8
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.5e-18 100.5 94 55.3
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 2.5e-18 99.8 169 39.6
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 1.3e-17 97.4 86 54.7
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 1.8e-16 93.6 114 49.1
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 3.1e-16 92.8 332 25.3
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 4.1e-16 92.4 68 69.1
TPR.G30321 Trifolium pratense HOM05D004110 ORTHO05D004810 4.1e-16 92.4 74 62.2
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 5.3e-16 92.0 68 66.2
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 1.5e-15 90.5 125 36.8
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.5e-15 90.5 233 30.9
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 1.3e-14 87.4 157 32.5
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 1.7e-14 87.0 161 37.3
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.2e-12 80.9 137 32.1
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 7.9e-12 78.2 68 57.4
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 1.0e-11 77.8 59 55.9
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 6.7e-11 75.1 158 33.5
arahy.Tifrunner.gnm1.ann1.9L03M9 Arachis hypogaea HOM05D004110 ORTHO05D004810 1.3e-09 70.9 43 72.1
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 2.2e-09 70.1 84 40.5
Psat5g035760 Pisum sativum HOM05D001673 ORTHO05D020227 6.3e-09 68.6 51 74.5
Psat0s5229g0080 Pisum sativum HOM05D006670 ORTHO05D006513 8.2e-09 68.2 165 36.4
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 9.1e-08 64.7 59 59.3
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 7.7e-07 61.6 106 39.6
Psat6g113120 Pisum sativum HOM05D020801 ORTHO05D004810 8.5e-06 58.2 52 57.7


User provided reference genes

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