Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 0.0e+00 1461.8 739 100.0
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 0.0e+00 1334.7 747 90.5
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 0.0e+00 1243.8 741 85.7
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 0.0e+00 1079.7 721 77.4
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 1.3e-302 1042.7 741 74.8
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 1.7e-286 989.2 643 79.3
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 1.3e-254 883.2 744 61.2
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 5.1e-246 854.7 743 60.2
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 1.9e-245 852.8 743 59.9
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 1.5e-237 826.6 580 75.0
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 1.6e-228 796.6 744 57.1
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 2.1e-223 779.6 747 54.9
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 6.1e-223 778.1 744 55.4
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 8.7e-222 774.2 747 54.5
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 1.7e-217 760.0 812 52.2
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 1.4e-216 756.9 747 53.7
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 1.1e-213 747.3 745 54.4
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 1.5e-213 746.9 745 54.2
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 7.4e-213 744.6 745 53.8
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 9.1e-211 737.6 520 74.4
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 1.3e-209 733.8 736 54.3
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 1.7e-209 733.4 739 54.0
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.7e-207 726.1 751 53.1
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 1.3e-204 717.2 750 51.3
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 3.7e-204 715.7 750 51.2
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 6.3e-204 714.9 665 56.7
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 3.5e-202 709.1 745 52.3
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 1.3e-201 707.2 737 52.1
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 6.5e-201 704.9 710 54.6
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 1.1e-200 704.1 741 51.8
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 1.6e-199 700.3 746 50.5
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 2.3e-198 696.4 741 52.0
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 3.0e-198 696.0 741 51.4
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 7.4e-197 691.4 745 51.7
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 4.1e-195 685.6 719 51.0
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 4.5e-194 682.2 751 51.0
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 5.0e-193 678.7 727 51.6
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 4.2e-192 675.6 741 48.2
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 1.4e-190 670.6 747 48.6
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 2.3e-190 669.8 741 50.2
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 7.5e-189 664.8 749 48.5
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 1.8e-187 660.2 755 47.8
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 3.1e-187 659.4 747 47.8
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 1.3e-185 654.1 681 52.7
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 3.8e-185 652.5 738 49.6
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 3.2e-184 649.4 738 49.6
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 1.6e-183 647.1 756 47.0
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 1.0e-182 644.4 747 47.3
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 3.0e-182 642.9 753 47.0
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 4.0e-182 642.5 742 49.2
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 1.3e-180 637.5 750 47.1
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 2.2e-180 636.7 797 45.4
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 1.1e-179 634.4 794 45.2
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 2.0e-178 630.2 724 48.5
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 4.5e-178 629.0 752 48.0
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 1.0e-177 627.9 727 47.3
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 1.7e-177 627.1 815 45.2
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 2.9e-177 626.3 719 48.4
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 1.5e-176 624.0 778 45.8
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 4.2e-176 622.5 773 46.7
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 5.5e-176 622.1 783 45.5
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 1.0e-174 617.8 728 46.4
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 1.2e-173 614.4 754 46.4
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 1.5e-173 614.0 427 76.1
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 9.8e-173 611.3 726 47.2
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 6.6e-169 598.6 734 46.2
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 1.5e-168 597.4 745 46.6
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 3.3e-168 596.3 718 46.1
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 5.6e-168 595.5 744 45.4
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 8.0e-167 591.7 692 48.0
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 4.0e-166 589.3 750 43.9
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 5.2e-166 589.0 715 45.5
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 4.6e-162 575.9 742 44.2
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 1.7e-161 573.9 720 45.1
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 1.9e-160 570.5 744 44.5
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 4.3e-160 569.3 612 50.8
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 2.8e-159 566.6 775 43.2
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 2.3e-158 563.5 740 44.7
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 1.1e-155 554.7 739 41.8
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 1.2e-154 551.2 712 44.2
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 6.0e-154 548.9 709 44.4
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 5.4e-147 525.8 746 40.3
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 5.8e-141 505.8 350 73.7
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 2.2e-140 503.8 672 41.8
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 1.3e-137 494.6 371 70.4
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 1.8e-126 457.6 540 46.5
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 1.9e-123 447.6 488 49.6
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 8.7e-121 438.7 554 47.1
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 4.8e-119 433.0 571 45.9
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 8.1e-119 432.2 741 37.2
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 1.8e-113 414.5 423 50.4
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 3.0e-113 413.7 453 50.6
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.3e-111 408.3 348 57.8
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 6.5e-108 396.0 587 41.7
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 7.9e-106 389.0 443 46.7
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 2.8e-103 380.6 774 38.8
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 9.4e-99 365.5 385 50.4
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 1.8e-97 361.3 545 40.4
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 2.5e-96 357.5 690 34.6
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 1.3e-92 345.1 719 36.0
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 1.0e-89 335.5 349 53.0
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 9.1e-86 322.4 807 28.5
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 3.5e-85 320.5 276 58.3
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 1.5e-83 315.1 344 48.0
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 5.5e-83 313.2 699 30.2
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 1.6e-82 311.6 335 49.9
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 2.6e-80 304.3 867 27.6
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 2.4e-78 297.7 465 39.1
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 3.0e-65 254.2 256 50.8
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 3.0e-65 254.2 162 77.8
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.5e-64 251.9 196 62.2
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 1.6e-61 241.9 255 48.6
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 1.5e-56 225.3 246 52.8
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 1.4e-54 218.8 160 64.4
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 1.8e-54 218.4 899 23.8
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 4.6e-53 213.8 276 46.0
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 5.6e-51 206.8 160 62.5
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 2.1e-50 204.9 270 44.8
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.2e-45 189.1 140 66.4
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 3.1e-25 121.3 104 54.8
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 3.2e-22 111.3 162 38.9
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 9.3e-22 109.8 141 46.8
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.2e-21 109.4 98 58.2
Cfa022750 Carpinus fangiana HOM05D005820 ORTHO05D007116 9.9e-16 89.7 698 20.6
arahy.Tifrunner.gnm1.ann1.DVH85A Arachis hypogaea HOM05D005820 ORTHO05D007116 2.7e-13 81.6 59 74.6
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 7.4e-11 73.6 78 52.6
SHI15006 Sapria himalayana HOM05D005820 ORTHO05D007116 4.0e-09 67.8 175 29.1
COL.COLO4_37046 Corchorus olitorius HOM05D005820 ORTHO05D007116 3.4e-08 64.7 35 80.0
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 9.9e-08 63.2 209 24.9
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 2.2e-07 62.0 162 29.0
MCO08G313 Micromonas commoda HOM05D005820 ORTHO05D007116 1.4e-06 59.3 130 30.0


User provided reference genes

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