Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 2.6e-189 665.2 330 100.0
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 2.9e-185 651.7 330 97.3
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 8.0e-183 643.7 330 95.2
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 2.4e-179 632.1 332 94.9
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 9.7e-173 610.1 328 92.4
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 1.3e-172 609.8 329 92.1
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 4.8e-172 607.8 329 91.2
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 2.7e-170 602.1 325 91.4
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 2.2e-169 599.0 327 89.6
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 2.2e-169 599.0 327 89.6
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 2.3e-166 589.0 322 90.4
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 2.8e-164 582.0 327 87.8
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 1.2e-162 576.6 328 85.4
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 5.9e-162 574.3 325 87.1
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 5.0e-161 571.2 326 86.5
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 1.9e-160 569.3 322 85.7
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 9.5e-160 567.0 321 86.0
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 9.5e-160 567.0 323 85.8
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 4.7e-159 564.7 327 83.8
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 8.0e-159 563.9 324 85.2
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 1.4e-158 563.1 324 85.2
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 1.8e-158 562.8 324 84.9
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 2.3e-158 562.4 326 84.7
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 2.3e-158 562.4 328 85.4
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 3.0e-158 562.0 328 85.1
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 3.0e-158 562.0 328 85.1
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 4.0e-158 561.6 328 85.1
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 6.8e-158 560.8 322 84.8
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 1.2e-157 560.1 317 86.1
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 1.2e-157 560.1 317 86.1
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 1.5e-157 559.7 323 84.8
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 7.5e-157 557.4 322 84.5
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 9.8e-157 557.0 328 84.5
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 1.3e-156 556.6 317 85.8
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 1.3e-156 556.6 317 85.5
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 8.3e-156 553.9 319 84.0
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 8.3e-156 553.9 326 83.7
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 8.3e-156 553.9 323 82.7
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 1.4e-155 553.1 322 83.2
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 1.4e-155 553.1 324 82.1
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 2.4e-155 552.4 317 85.2
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 9.2e-155 550.4 320 83.8
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 7.8e-154 547.4 324 83.0
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 1.0e-153 547.0 324 83.0
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 1.0e-153 547.0 324 82.7
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 1.7e-153 546.2 322 83.2
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 2.9e-153 545.4 326 82.5
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 2.9e-153 545.4 323 83.0
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 1.5e-152 543.1 321 81.6
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 1.9e-152 542.7 326 81.3
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 4.3e-152 541.6 322 82.3
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 5.6e-152 541.2 323 80.8
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 7.3e-152 540.8 318 84.3
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 1.2e-151 540.0 322 82.9
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 1.6e-151 539.7 316 82.9
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 2.8e-151 538.9 314 83.1
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 2.8e-151 538.9 350 76.6
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 3.6e-151 538.5 323 81.1
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 4.7e-151 538.1 318 82.1
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 1.4e-150 536.6 291 90.0
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 1.8e-150 536.2 323 80.8
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 5.2e-150 534.6 324 81.5
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 8.9e-150 533.9 322 80.4
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 8.9e-150 533.9 322 81.1
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 4.4e-149 531.6 323 79.9
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 1.7e-148 529.6 323 79.6
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 2.9e-148 528.9 325 80.9
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 3.7e-148 528.5 323 79.3
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 4.9e-148 528.1 322 80.4
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 1.4e-147 526.6 289 91.0
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 1.4e-147 526.6 327 81.0
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 3.2e-147 525.4 320 80.9
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 9.2e-147 523.9 321 79.1
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 1.6e-146 523.1 324 78.7
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 4.6e-146 521.5 325 79.1
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 1.5e-144 516.5 321 79.1
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 4.3e-144 515.0 324 78.1
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 7.3e-144 514.2 323 76.5
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 9.5e-144 513.8 323 78.3
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 1.2e-143 513.5 329 77.8
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 2.8e-143 512.3 329 77.5
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 2.8e-143 512.3 323 78.0
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 3.6e-143 511.9 322 77.6
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 3.6e-143 511.9 322 77.6
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 1.4e-142 510.0 322 78.0
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 1.8e-142 509.6 322 77.3
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 1.2e-141 506.9 319 77.7
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 1.5e-141 506.5 323 77.7
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 2.6e-141 505.8 324 75.0
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 3.5e-138 495.4 295 82.4
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 3.9e-137 491.9 326 76.7
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 6.6e-137 491.1 327 73.7
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.1e-136 490.3 289 83.4
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 2.5e-136 489.2 322 75.8
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 3.3e-136 488.8 290 82.8
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 5.2e-134 481.5 322 73.6
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 6.8e-134 481.1 351 68.9
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 4.9e-132 474.9 262 86.6
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.2e-130 470.3 258 86.8
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 6.0e-130 468.0 258 86.4
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 6.6e-129 464.5 319 75.2
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 6.2e-127 458.0 257 85.6
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 6.2e-127 458.0 289 78.2
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 8.9e-126 454.1 342 69.3
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 3.4e-125 452.2 330 69.7
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 9.0e-118 427.6 272 79.0
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.7e-116 423.3 256 80.9
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 5.1e-113 411.8 225 88.4
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 2.6e-109 399.4 230 85.7
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 1.8e-102 376.7 325 59.1
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 2.4e-102 376.3 325 58.2
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 6.5e-100 368.2 329 57.8
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 2.1e-90 336.7 281 66.5
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 6.5e-84 315.1 207 77.8
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 8.8e-81 304.7 297 53.9
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 7.7e-77 291.6 206 67.0
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 3.2e-75 286.2 174 82.2
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 2.0e-72 276.9 150 90.0
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 5.3e-62 242.3 207 60.9
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 9.1e-62 241.5 215 62.3
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 5.5e-51 205.7 344 36.3
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 1.2e-50 204.5 315 44.1
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 6.8e-49 198.7 177 60.5
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 4.4e-48 196.1 238 47.5
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 1.9e-43 180.6 408 32.4
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 5.2e-41 172.6 114 76.3
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 1.4e-38 164.5 229 49.8
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 3.9e-36 156.4 337 35.3
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 3.1e-33 146.7 107 67.3
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 8.3e-23 112.1 250 36.0
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 3.3e-19 100.1 57 86.0
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 8.9e-17 92.0 98 53.1
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 9.9e-16 88.6 45 88.9
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 6.6e-12 75.9 55 65.5
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 9.6e-11 72.0 78 51.3
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 4.0e-09 66.6 34 85.3
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 2.2e-07 60.8 44 75.0


User provided reference genes

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