Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 2.4e-122 442.2 226 100.0
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 1.7e-112 409.5 226 92.9
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 1.5e-100 369.8 227 84.1
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 1.4e-98 363.2 228 82.9
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 7.8e-97 357.5 224 81.2
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 1.1e-93 347.1 214 80.8
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 6.8e-93 344.4 214 81.8
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 1.9e-90 336.3 269 67.7
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 1.6e-81 306.6 212 75.0
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 1.1e-79 300.4 354 51.4
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 7.6e-76 287.7 201 76.6
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 1.1e-74 283.9 225 65.3
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 2.1e-73 279.6 220 64.1
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 6.0e-73 278.1 226 65.0
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 6.0e-73 278.1 235 62.1
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 1.0e-72 277.3 217 65.0
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.7e-72 276.6 225 63.6
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 6.6e-72 274.6 230 63.9
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 6.6e-72 274.6 229 63.3
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 1.5e-71 273.5 220 62.7
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 1.5e-71 273.5 230 63.0
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 1.9e-71 273.1 230 62.6
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 1.9e-71 273.1 226 62.8
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 5.6e-71 271.6 225 64.4
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.6e-71 271.6 229 63.3
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 3.6e-70 268.9 223 61.9
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 3.6e-70 268.9 225 63.1
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 6.2e-70 268.1 224 60.7
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 8.1e-70 267.7 224 62.9
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 1.1e-69 267.3 230 62.6
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 1.1e-69 267.3 223 61.9
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 1.1e-69 267.3 219 63.5
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 9.0e-69 264.2 243 58.4
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 1.5e-68 263.5 227 63.0
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 2.6e-68 262.7 224 59.8
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 3.4e-68 262.3 226 61.9
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 4.5e-68 261.9 226 61.9
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.3e-67 260.4 223 59.2
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 1.7e-67 260.0 226 61.5
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 1.7e-67 260.0 223 59.6
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 2.2e-67 259.6 226 61.5
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 2.9e-67 259.2 186 68.8
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 2.9e-67 259.2 223 60.5
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 3.8e-67 258.8 223 60.1
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 4.9e-67 258.5 224 59.8
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 8.4e-67 257.7 223 60.5
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 8.4e-67 257.7 223 60.5
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 1.1e-66 257.3 226 58.0
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 1.4e-66 256.9 226 61.9
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 3.2e-66 255.8 226 61.9
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 3.2e-66 255.8 226 61.1
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 5.5e-66 255.0 230 60.0
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 9.3e-66 254.2 226 60.6
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 1.6e-65 253.4 213 62.4
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 1.6e-65 253.4 217 59.9
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 2.7e-65 252.7 226 61.5
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 2.7e-65 252.7 226 61.5
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 4.6e-65 251.9 219 57.5
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 6.0e-65 251.5 222 58.6
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 1.0e-64 250.8 243 57.6
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.0e-64 250.8 225 60.4
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.0e-64 250.8 232 58.2
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 2.3e-64 249.6 232 58.2
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 3.0e-64 249.2 215 61.4
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 3.0e-64 249.2 219 57.1
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 3.0e-64 249.2 188 66.0
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 3.9e-64 248.8 206 63.1
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 3.9e-64 248.8 232 58.2
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 6.7e-64 248.1 211 62.1
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 6.7e-64 248.1 232 58.6
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 6.7e-64 248.1 225 60.0
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 8.7e-64 247.7 232 58.2
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.5e-63 246.9 229 57.6
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 5.6e-63 245.0 230 57.4
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 7.4e-63 244.6 245 55.9
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.3e-62 243.8 230 58.7
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 1.3e-62 243.8 226 57.1
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 3.1e-61 239.2 206 60.2
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 1.5e-60 236.9 231 56.7
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.0e-60 236.5 223 58.7
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 2.0e-60 236.5 185 65.9
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 4.5e-60 235.3 187 64.7
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 1.3e-59 233.8 225 54.7
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 1.3e-59 233.8 207 58.0
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 3.8e-59 232.3 228 57.5
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.4e-58 230.3 228 57.5
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 1.9e-58 229.9 229 56.8
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 5.5e-58 228.4 182 67.0
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 2.7e-57 226.1 227 56.4
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 6.7e-56 221.5 258 51.6
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 1.5e-55 220.3 231 55.0
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 1.9e-55 219.9 229 55.0
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 9.6e-55 217.6 160 69.4
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 2.1e-54 216.5 185 61.1
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 4.8e-54 215.3 223 52.5
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 2.2e-51 206.5 208 55.3
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 1.4e-50 203.8 160 65.6
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 2.5e-50 203.0 214 54.7
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 7.2e-50 201.4 205 53.2
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 6.1e-49 198.4 177 59.3
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 7.9e-49 198.0 190 55.8
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 3.3e-47 192.6 317 40.7
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 9.7e-47 191.0 227 47.6
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 4.8e-46 188.7 122 80.3
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 6.3e-46 188.3 156 65.4
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 6.3e-46 188.3 164 62.2
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 1.1e-45 187.6 152 65.8
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 9.0e-45 184.5 268 44.0
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 1.5e-44 183.7 114 81.6
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 2.6e-44 183.0 216 46.3
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 2.9e-43 179.5 204 44.1
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 9.4e-42 174.5 227 41.4
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 1.6e-41 173.7 221 46.2
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 3.9e-40 169.1 214 40.2
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 8.8e-40 167.9 234 44.0
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 4.3e-39 165.6 164 56.7
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 1.3e-38 164.1 256 43.0
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 2.2e-38 163.3 164 56.7
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 5.3e-37 158.7 169 56.2
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.9e-36 155.2 146 57.5
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 2.1e-33 146.7 134 53.0
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 1.7e-27 127.1 64 95.3
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 5.0e-27 125.6 171 46.2
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.1e-26 124.4 92 67.4
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 9.4e-26 121.3 100 65.0
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 5.2e-24 115.5 123 47.2
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 6.7e-24 115.2 248 33.5
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 8.8e-24 114.8 160 42.5
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 2.2e-22 110.2 218 33.9
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 2.8e-22 109.8 99 58.6
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.4e-21 107.5 107 57.9
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.0e-20 103.6 174 42.0
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 1.1e-18 97.8 84 64.3
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 2.5e-18 96.7 225 28.9
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 1.2e-15 87.8 228 32.5
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 6.3e-14 82.0 58 70.7
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 5.4e-13 79.0 216 27.8
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 5.0e-11 72.4 93 52.7
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 6.5e-11 72.0 66 57.6
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 6.5e-11 72.0 93 52.7
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 4.2e-10 69.3 66 54.5
Sabra10G0113400 Salix brachista HOM05D004725 ORTHO05D005683 2.7e-09 66.6 152 30.3
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 4.7e-09 65.9 57 63.2
Lalb_Chr20g0115611 Lupinus albus HOM05D004725 ORTHO05D005683 6.1e-09 65.5 36 88.9
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 1.4e-08 64.3 40 75.0
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 5.2e-08 62.4 83 49.4
CARHR286240 Cardamine hirsuta HOM05D004725 ORTHO05D005683 3.4e-07 59.7 66 43.9


User provided reference genes

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