Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 1.4e-270 935.6 460 100.0
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 1.0e-260 902.9 460 95.9
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 1.5e-251 872.5 460 91.1
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 2.6e-248 861.7 461 90.9
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 2.7e-237 825.1 461 87.4
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 8.1e-234 813.5 459 84.7
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 2.9e-231 805.1 452 86.5
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 1.6e-229 799.3 455 85.1
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 5.1e-228 794.3 475 81.7
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 5.1e-228 794.3 460 83.5
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 2.6e-224 781.9 468 82.1
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 4.4e-224 781.2 477 79.7
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 4.2e-214 748.0 459 78.0
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 4.6e-213 744.6 451 78.3
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 1.3e-212 743.0 460 77.8
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 5.1e-212 741.1 455 78.7
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 1.1e-211 740.0 459 76.9
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 9.6e-211 736.9 458 77.5
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 1.4e-209 733.0 464 76.1
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 1.8e-209 732.6 456 75.7
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 2.4e-209 732.3 463 76.2
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 3.1e-209 731.9 424 82.1
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 3.1e-209 731.9 456 76.8
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 5.3e-209 731.1 460 76.3
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 7.6e-208 727.2 453 76.6
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 2.2e-207 725.7 453 78.1
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 2.2e-207 725.7 460 75.4
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 4.9e-207 724.5 457 76.1
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 3.2e-206 721.8 460 75.9
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 2.7e-205 718.8 456 76.3
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 4.6e-205 718.0 458 74.0
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 4.6e-205 718.0 453 76.4
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 7.9e-205 717.2 453 77.7
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 1.0e-204 716.8 459 75.4
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 2.3e-204 715.7 454 76.2
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 5.1e-204 714.5 459 75.8
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 5.1e-204 714.5 459 75.8
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 6.7e-204 714.1 452 77.0
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 6.7e-204 714.1 454 73.8
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 2.5e-203 712.2 457 72.6
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 3.3e-203 711.8 440 75.5
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 3.7e-202 708.4 454 72.9
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 4.8e-202 708.0 492 70.9
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 1.1e-201 706.8 449 75.9
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 6.9e-201 704.1 449 74.8
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 2.0e-200 702.6 453 73.7
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 2.6e-200 702.2 456 74.6
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 3.4e-200 701.8 458 73.6
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 5.9e-200 701.0 456 74.3
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 1.0e-199 700.3 456 74.6
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 2.9e-199 698.7 449 74.8
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 6.5e-199 697.6 455 71.6
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 3.2e-198 695.3 449 73.9
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 4.2e-198 694.9 454 72.2
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 5.5e-198 694.5 453 71.7
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 1.2e-197 693.3 447 73.6
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 1.6e-197 693.0 459 73.6
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 1.6e-197 693.0 447 73.6
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 1.6e-197 693.0 459 73.6
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 2.7e-197 692.2 493 69.6
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 4.6e-197 691.4 447 73.2
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 4.6e-197 691.4 448 74.3
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 7.9e-197 690.6 447 73.4
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 1.0e-196 690.3 447 72.9
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 1.0e-196 690.3 448 72.5
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.0e-196 690.3 452 73.7
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 1.8e-196 689.5 429 75.5
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.3e-196 689.1 478 70.5
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 2.3e-196 689.1 455 72.3
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 5.1e-196 688.0 448 73.2
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 1.5e-195 686.4 448 72.8
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 1.9e-195 686.0 453 72.4
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 2.5e-195 685.6 448 72.8
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 2.5e-195 685.6 449 73.3
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 4.3e-195 684.9 451 73.2
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 1.6e-194 682.9 458 73.4
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 4.8e-194 681.4 448 72.1
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 4.8e-194 681.4 453 72.6
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 8.2e-194 680.6 452 74.6
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 1.4e-193 679.9 475 68.0
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 2.4e-193 679.1 452 72.6
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 4.1e-193 678.3 455 71.9
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 6.9e-193 677.6 456 72.6
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 9.0e-193 677.2 597 59.5
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 2.0e-192 676.0 449 71.9
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.9e-191 672.2 495 67.1
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 1.2e-189 666.8 506 66.0
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 3.0e-188 662.1 467 69.8
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 3.9e-188 661.8 454 69.2
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 2.0e-187 659.4 454 70.0
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 3.3e-187 658.7 423 75.4
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 4.3e-187 658.3 448 70.5
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 1.3e-186 656.8 364 87.9
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 1.1e-185 653.7 423 73.3
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 1.8e-185 652.9 444 71.2
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 4.1e-185 651.7 541 61.6
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 2.0e-184 649.4 454 71.6
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 2.0e-171 606.3 457 63.9
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 7.5e-171 604.4 379 75.2
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 4.8e-170 601.7 378 76.7
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 3.5e-168 595.5 361 79.5
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 8.3e-162 574.3 378 72.0
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 2.0e-155 553.1 459 61.2
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 6.3e-154 548.1 444 60.8
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 1.0e-151 540.8 393 67.7
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 1.3e-151 540.4 459 58.8
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 1.5e-147 526.9 425 63.5
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 1.8e-145 520.0 476 57.4
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 1.9e-142 510.0 451 56.1
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 4.4e-139 498.8 454 56.4
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 3.1e-132 476.1 375 63.7
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 1.9e-129 466.8 272 77.6
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 2.5e-126 456.4 445 53.7
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 2.1e-120 436.8 282 72.3
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 1.0e-119 434.5 273 74.7
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 2.6e-107 393.3 248 69.8
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 2.9e-106 389.8 253 74.7
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 4.9e-106 389.0 499 45.3
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 5.3e-100 369.0 446 45.1
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.4e-97 360.1 250 74.8
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 1.8e-95 354.0 533 41.1
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 1.3e-85 321.2 457 39.6
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 5.0e-82 309.3 250 66.4
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 6.5e-82 308.9 244 67.2
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 4.4e-70 269.6 236 59.3
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 1.9e-65 254.2 157 73.2
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 2.1e-64 250.8 121 97.5
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 1.4e-63 248.1 195 66.2
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 5.7e-62 242.7 184 68.5
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 4.8e-61 239.6 184 63.6
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 6.5e-58 229.2 151 69.5
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 2.6e-54 217.2 236 51.7
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 6.3e-53 212.6 139 74.8
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.6e-43 181.4 113 78.8
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 5.0e-42 176.4 113 76.1
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 5.5e-41 172.9 102 86.3
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.7e-37 161.4 106 74.5
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 2.0e-35 154.5 106 72.6
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 5.9e-35 152.9 106 72.6
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 1.7e-34 151.4 88 76.1
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 8.9e-31 139.0 90 75.6
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.2e-29 134.4 337 29.1
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.3e-26 125.2 94 60.6
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 9.8e-22 109.0 66 77.3
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 6.4e-21 106.3 68 75.0
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 1.4e-20 105.1 71 78.9
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 1.4e-20 105.1 71 78.9
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 1.4e-20 105.1 71 78.9
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 2.0e-19 101.3 102 54.9
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 6.6e-18 96.3 97 50.5
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 4.0e-15 87.0 44 90.9
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 6.0e-11 73.2 322 27.0
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 1.0e-10 72.4 41 82.9
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.7e-10 71.6 51 64.7
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.5e-09 68.6 37 89.2
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 1.5e-09 68.6 37 89.2
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 4.3e-09 67.0 37 86.5
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 6.2e-08 63.2 220 29.1
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 8.1e-08 62.8 236 28.8
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 1.1e-07 62.4 66 54.5
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 1.4e-07 62.0 233 27.0
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 1.4e-07 62.0 233 27.0
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 1.4e-07 62.0 233 27.0
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 1.8e-07 61.6 297 26.6
GSVIVG01022727001 Vitis vinifera HOM05D004762 ORTHO05D005972 2.4e-07 61.2 51 56.9
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 2.4e-07 61.2 449 23.6
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 4.0e-07 60.5 233 27.9
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 6.8e-07 59.7 295 26.4
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 8.9e-07 59.3 233 27.5
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 8.9e-07 59.3 178 29.8
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 1.2e-06 58.9 105 42.9
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 1.5e-06 58.5 233 27.5
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 1.5e-06 58.5 163 32.5
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 2.6e-06 57.8 273 27.5
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 3.4e-06 57.4 233 27.9
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 4.4e-06 57.0 240 27.1
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 4.4e-06 57.0 329 26.4
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 4.4e-06 57.0 186 30.1
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 7.6e-06 56.2 233 27.0
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 7.6e-06 56.2 178 29.2


User provided reference genes

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