Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G107200 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 5.8e-101 370.9 194 100.0
Phvul.008G172100 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 4.5e-53 211.8 174 70.1
Phvul.008G070600 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 3.5e-45 185.7 116 90.5
Glyma.18G227500 Glycine max HOM05D003997 ORTHO05D002698 5.2e-41 171.8 191 60.2
VMungo1383G3620 Vigna mungo HOM05D003997 ORTHO05D002698 5.2e-41 171.8 116 83.6
Glyma.09G264400 Glycine max HOM05D003997 ORTHO05D002698 6.8e-41 171.4 169 66.3
Phvul.008G070900 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 2.0e-40 169.9 115 87.0
Ca_12342_v3 Cicer arietinum L. HOM05D003997 ORTHO05D002698 7.8e-37 157.9 116 75.0
Lj2g0021502 Lotus japonicus HOM05D003997 ORTHO05D002698 1.0e-36 157.5 116 75.9
CANSAT35G1644 Cannabis sativa HOM05D003997 ORTHO05D002698 2.6e-32 142.9 115 68.7
Medtr1g040020 Medicago truncatula HOM05D003997 ORTHO05D002698 4.4e-32 142.1 112 69.6
Lalb_Chr05g0221411 Lupinus albus HOM05D003997 ORTHO05D002698 5.8e-32 141.7 120 69.2
Cfa020087 Carpinus fangiana HOM05D003997 ORTHO05D002698 2.2e-31 139.8 190 51.6
QL03p055008 Quercus lobata HOM05D003997 ORTHO05D002698 1.1e-30 137.5 191 49.7
CiPaw.15G185300 Carya illinoinensis HOM05D003997 ORTHO05D002698 3.2e-30 136.0 190 49.5
Cpa.g.sc17.105 Carica papaya HOM05D003997 ORTHO05D002698 4.1e-30 135.6 191 49.2
Lalb_Chr16g0386841 Lupinus albus HOM05D003997 ORTHO05D002698 5.4e-30 135.2 120 66.7
QL07p027111 Quercus lobata HOM05D003997 ORTHO05D002698 9.2e-30 134.4 191 49.2
Psat6g101760 Pisum sativum HOM05D003997 ORTHO05D002698 2.1e-29 133.3 116 66.4
CiPaw.08G072600 Carya illinoinensis HOM05D003997 ORTHO05D002698 4.6e-29 132.1 190 48.4
Potri.016G067100 Populus trichocarpa HOM05D003997 ORTHO05D002698 4.6e-29 132.1 191 49.2
Hma1.2p1_2082F.1_g313570 Hydrangea macrophylla HOM05D003997 ORTHO05D002698 6.0e-29 131.7 115 66.1
Gohir.A01G200200 Gossypium hirsutum HOM05D003997 ORTHO05D002698 7.8e-29 131.3 113 64.6
Gohir.D01G190300 Gossypium hirsutum HOM05D003997 ORTHO05D002698 7.8e-29 131.3 113 64.6
Gorai.002G234000 Gossypium raimondii HOM05D003997 ORTHO05D002698 7.8e-29 131.3 113 64.6
Atru.chr8.1304 Acer truncatum HOM05D003997 ORTHO05D002698 1.3e-28 130.6 191 48.2
Ciclev10013709m.g Citrus clementina HOM05D003997 ORTHO05D002698 1.3e-28 130.6 189 49.7
Thecc.05G108200 Theobroma cacao HOM05D003997 ORTHO05D002698 1.3e-28 130.6 189 47.6
AUR62015091 Chenopodium quinoa HOM05D003997 ORTHO05D002698 3.0e-28 129.4 119 59.7
Duzib128G1254 Durio zibethinus HOM05D003997 ORTHO05D002698 3.9e-28 129.0 113 63.7
Lj3A736G17 Lonicera japonica HOM05D003997 ORTHO05D002698 5.1e-28 128.6 116 64.7
Sabra16G0068400 Salix brachista HOM05D003997 ORTHO05D002698 5.1e-28 128.6 191 48.7
AUR62017549 Chenopodium quinoa HOM05D003997 ORTHO05D002698 6.6e-28 128.3 119 58.8
DCAR_013448 Daucus carota HOM05D003997 ORTHO05D002698 6.6e-28 128.3 178 49.4
Rhsim03G0061700 Rhododendron simsii HOM05D003997 ORTHO05D002698 6.6e-28 128.3 113 64.6
TWI53G0181 Tripterygium wilfordii HOM05D003997 ORTHO05D002698 8.6e-28 127.9 191 46.6
Actinidia37765 Actinidia chinensis HOM05D003997 ORTHO05D002698 1.1e-27 127.5 190 47.9
Prupe.7G091500 Prunus persica HOM05D003997 ORTHO05D002698 1.1e-27 127.5 115 63.5
EL10Ac7g16269 Beta vulgaris HOM05D003997 ORTHO05D002698 1.5e-27 127.1 194 44.3
Nn2g14387 Nelumbo nucifera HOM05D003997 ORTHO05D002698 1.5e-27 127.1 190 48.4
COL.COLO4_29520 Corchorus olitorius HOM05D003997 ORTHO05D002698 1.9e-27 126.7 113 61.9
Gohir.A09G132800 Gossypium hirsutum HOM05D003997 ORTHO05D002698 3.3e-27 125.9 113 61.1
RhsimUnG0113000 Rhododendron simsii HOM05D003997 ORTHO05D002698 3.3e-27 125.9 108 64.8
Cc06_g06830 Coffea canephora HOM05D003997 ORTHO05D002698 4.3e-27 125.6 115 62.6
vmacro07504 Vaccinium macrocarpon HOM05D003997 ORTHO05D002698 4.3e-27 125.6 111 63.1
Migut.L01852 Erythranthe guttata HOM05D003997 ORTHO05D002698 9.5e-27 124.4 113 62.8
Migut.O00931 Erythranthe guttata HOM05D003997 ORTHO05D002698 9.5e-27 124.4 113 62.8
MD12G1043400 Malus domestica HOM05D003997 ORTHO05D002698 9.5e-27 124.4 115 62.6
Rhsim03G0061200 Rhododendron simsii HOM05D003997 ORTHO05D002698 9.5e-27 124.4 113 62.8
GSVIVG01022501001 Vitis vinifera HOM05D003997 ORTHO05D002698 9.5e-27 124.4 190 47.9
Eucgr.H00426 Eucalyptus grandis HOM05D003997 ORTHO05D002698 1.2e-26 124.0 190 46.3
MSTRG.10419 Avicennia marina HOM05D003997 ORTHO05D002698 1.6e-26 123.6 113 62.8
MD14G1042400 Malus domestica HOM05D003997 ORTHO05D002698 1.6e-26 123.6 115 61.7
RcHm_v2.0_Chr3g0476631 Rosa chinensis HOM05D003997 ORTHO05D002698 1.6e-26 123.6 115 62.6
SGA_v2.0_scaffold392G50675 Striga asiatica HOM05D003997 ORTHO05D002698 2.1e-26 123.2 113 62.8
Dinv25067 Davidia involucrata HOM05D003997 ORTHO05D002698 3.6e-26 122.5 190 45.8
Gorai.006G147800 Gossypium raimondii HOM05D003997 ORTHO05D002698 4.7e-26 122.1 112 61.6
FvH4_6g20730 Fragaria vesca HOM05D003997 ORTHO05D002698 6.2e-26 121.7 115 61.7
FAN02G0475 Fragaria x ananassa HOM05D003997 ORTHO05D002698 6.2e-26 121.7 115 61.7
FAN05G3201 Fragaria x ananassa HOM05D003997 ORTHO05D002698 6.2e-26 121.7 115 61.7
FAN14G5955 Fragaria x ananassa HOM05D003997 ORTHO05D002698 6.2e-26 121.7 115 61.7
RcHm_v2.0_Chr7g0223381 Rosa chinensis HOM05D003997 ORTHO05D002698 8.1e-26 121.3 115 61.7
Manes.08G035900 Manihot esculenta HOM05D003997 ORTHO05D002698 1.8e-25 120.2 191 45.5
Oeu020171.1 Olea europaea HOM05D003997 ORTHO05D002698 2.3e-25 119.8 190 45.8
ClCG01G012560 Citrullus lanatus HOM05D003997 ORTHO05D002698 4.0e-25 119.0 116 63.8
Nitab4.5_0000082g0420 Nicotiana tabacum HOM05D003997 ORTHO05D002698 4.0e-25 119.0 115 57.4
Nitab4.5_0009392g0020 Nicotiana tabacum HOM05D003997 ORTHO05D002698 4.0e-25 119.0 115 57.4
CSS0008111 Camellia sinensis var. sinensis HOM05D003997 ORTHO05D002698 5.2e-25 118.6 188 45.7
CSS0023244 Camellia sinensis var. sinensis HOM05D003997 ORTHO05D002698 5.2e-25 118.6 188 45.7
ATR0730G052 Amborella trichopoda HOM05D003997 ORTHO05D002698 6.8e-25 118.2 116 62.1
Sc06g0010610 Simmondsia chinensis HOM05D003997 ORTHO05D002698 6.8e-25 118.2 191 45.5
TAR623G1175 Trochodendron aralioides HOM05D003997 ORTHO05D002698 8.9e-25 117.9 192 45.8
SalBow5G1795 Salvia bowleyana HOM05D003997 ORTHO05D002698 1.2e-24 117.5 192 44.8
Solyc04g017680.3 Solanum lycopersicum HOM05D003997 ORTHO05D002698 1.5e-24 117.1 115 60.9
TWI74G0953 Tripterygium wilfordii HOM05D003997 ORTHO05D002698 1.5e-24 117.1 113 59.3
Sed0019356 Sechium edule HOM05D003997 ORTHO05D002698 2.0e-24 116.7 115 61.7
Sopen04g008760 Solanum pennellii HOM05D003997 ORTHO05D002698 2.6e-24 116.3 115 60.0
THA.LOC109116862 Tarenaya hassleriana HOM05D003997 ORTHO05D002698 2.6e-24 116.3 113 62.8
Ah.15g098860 Amaranthus hybridus HOM05D003997 ORTHO05D002698 5.8e-24 115.2 117 54.7
BraA06t25868Z Brassica rapa HOM05D003997 ORTHO05D002698 5.8e-24 115.2 116 59.5
Aqoxy1G01867 Aquilegia oxysepala HOM05D003997 ORTHO05D002698 9.9e-24 114.4 115 59.1
Aqoxy4G00923 Aquilegia oxysepala HOM05D003997 ORTHO05D002698 1.3e-23 114.0 115 59.1
Lsat_1_v5_gn_4_40160 Lactuca sativa HOM05D003997 ORTHO05D002698 1.7e-23 113.6 115 60.9
Nitab4.5_0014391g0010 Nicotiana tabacum HOM05D003997 ORTHO05D002698 1.7e-23 113.6 115 57.4
Os01g0616500 Oryza sativa ssp. japonica HOM05D003997 ORTHO05D002698 4.9e-23 112.1 178 44.9
HanXRQChr17g0562561 Helianthus annuus HOM05D003997 ORTHO05D002698 6.4e-23 111.7 115 59.1
Nitab4.5_0021549g0010 Nicotiana tabacum HOM05D003997 ORTHO05D002698 8.4e-23 111.3 114 57.0
Peaxi162Scf00002g03712 Petunia axillaris HOM05D003997 ORTHO05D002698 8.4e-23 111.3 115 56.5
arahy.Tifrunner.gnm1.ann1.2ECS7R Arachis hypogaea HOM05D003997 ORTHO05D002698 1.1e-22 110.9 117 58.1
arahy.Tifrunner.gnm1.ann1.4C6UH4 Arachis hypogaea HOM05D003997 ORTHO05D002698 1.1e-22 110.9 117 58.1
arahy.Tifrunner.gnm1.ann1.7B1PRD Arachis hypogaea HOM05D003997 ORTHO05D002698 1.1e-22 110.9 117 58.1
arahy.Tifrunner.gnm1.ann1.RN4U32 Arachis hypogaea HOM05D003997 ORTHO05D002698 1.1e-22 110.9 117 58.1
arahy.Tifrunner.gnm1.ann1.W16VAI Arachis hypogaea HOM05D003997 ORTHO05D002698 1.1e-22 110.9 117 58.1
arahy.Tifrunner.gnm1.ann1.ZAYD4R Arachis hypogaea HOM05D003997 ORTHO05D002698 1.1e-22 110.9 117 58.1
BcaB02g09651 Brassica carinata HOM05D003997 ORTHO05D002698 1.4e-22 110.5 115 56.5
MELO3C004760.2 Cucumis melo HOM05D003997 ORTHO05D002698 1.9e-22 110.2 116 60.3
Zm00001eb095190 Zea mays HOM05D003997 ORTHO05D002698 1.9e-22 110.2 179 44.1
AL1G60620 Arabidopsis lyrata HOM05D003997 ORTHO05D002698 2.4e-22 109.8 113 58.4
AT1G52370 Arabidopsis thaliana HOM05D003997 ORTHO05D002698 2.4e-22 109.8 113 58.4
AT4G28360 Arabidopsis thaliana HOM05D003997 ORTHO05D002698 2.4e-22 109.8 113 58.4
PSO675G1782 Papaver somniferum HOM05D003997 ORTHO05D002698 3.2e-22 109.4 115 59.1
PSO732G0769 Papaver somniferum HOM05D003997 ORTHO05D002698 3.2e-22 109.4 115 59.1
Aa31LG11G1160 Aethionema arabicum HOM05D003997 ORTHO05D002698 4.1e-22 109.0 113 57.5
Carub.0007s1240 Capsella rubella HOM05D003997 ORTHO05D002698 4.1e-22 109.0 113 58.4
TPR.G30221 Trifolium pratense HOM05D003997 ORTHO05D002698 4.1e-22 109.0 250 35.6
A02p42340 Brassica napus HOM05D003997 ORTHO05D002698 5.4e-22 108.6 113 56.6
C02p62220 Brassica napus HOM05D003997 ORTHO05D002698 5.4e-22 108.6 113 56.6
BolC2t12279H Brassica oleracea HOM05D003997 ORTHO05D002698 5.4e-22 108.6 113 56.6
BraA02t09164Z Brassica rapa HOM05D003997 ORTHO05D002698 5.4e-22 108.6 113 56.6
CsaV3_1G014590 Cucumis sativus L. HOM05D003997 ORTHO05D002698 5.4e-22 108.6 116 58.6
ECA234G3695 Erigeron canadensis HOM05D003997 ORTHO05D002698 7.1e-22 108.2 115 57.4
Carub.0001s4137 Capsella rubella HOM05D003997 ORTHO05D002698 9.2e-22 107.8 113 57.5
MD06G1011100 Malus domestica HOM05D003997 ORTHO05D002698 9.2e-22 107.8 115 54.8
Sp2g25660 Schrenkiella parvula HOM05D003997 ORTHO05D002698 1.2e-21 107.5 113 57.5
BcaC03g18154 Brassica carinata HOM05D003997 ORTHO05D002698 1.6e-21 107.1 113 55.8
BcaC03g18159 Brassica carinata HOM05D003997 ORTHO05D002698 1.6e-21 107.1 113 55.8
BolC3t18692H Brassica oleracea HOM05D003997 ORTHO05D002698 1.6e-21 107.1 114 58.8
unitig_8.g3554 Utricularia gibba HOM05D003997 ORTHO05D002698 1.6e-21 107.1 101 61.4
CARHR236070 Cardamine hirsuta HOM05D003997 ORTHO05D002698 2.1e-21 106.7 113 56.6
BcaB07g29840 Brassica carinata HOM05D003997 ORTHO05D002698 2.7e-21 106.3 115 57.4
Prupe.7G027600 Prunus persica HOM05D003997 ORTHO05D002698 2.7e-21 106.3 115 53.0
BcaC01g02477 Brassica carinata HOM05D003997 ORTHO05D002698 3.5e-21 105.9 115 56.5
C03p64380 Brassica napus HOM05D003997 ORTHO05D002698 3.5e-21 105.9 115 56.5
Thhalv10003962m.g Eutrema salsugineum HOM05D001982 ORTHO05D003938 3.5e-21 105.9 113 55.8
Phvul.008G071600 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 4.6e-21 105.5 59 93.2
arahy.Tifrunner.gnm1.ann1.RXW997 Arachis hypogaea HOM05D003997 ORTHO05D002698 7.8e-21 104.8 132 51.5
MBI19_g30302_MAGBIO Magnolia biondii HOM05D003997 ORTHO05D002698 1.3e-20 104.0 232 40.1
SEGI_26891 Sequoiadendron giganteum HOM05D003997 ORTHO05D002698 3.0e-20 102.8 201 40.8
HPP92_017694 Vanilla planifolia HOM05D003997 ORTHO05D002698 3.9e-20 102.4 205 41.5
CARHR060900 Cardamine hirsuta HOM05D003997 ORTHO05D002698 2.5e-19 99.8 116 55.2
Hund20962 Selenicereus undatus HOM05D003997 ORTHO05D002698 9.6e-19 97.8 60 83.3
Duzib093G0527 Durio zibethinus HOM05D003997 ORTHO05D002698 4.7e-18 95.5 97 57.7
SHI07013 Sapria himalayana HOM05D003997 ORTHO05D002698 4.7e-18 95.5 59 81.4
MD03G1130200 Malus domestica HOM05D003997 ORTHO05D002698 6.9e-17 91.7 115 49.6
AagrBONN_evm.TU.Sc2ySwM_228.3244 Anthoceros agrestis HOM05D003997 ORTHO05D002698 5.8e-16 88.6 132 44.7
arahy.Tifrunner.gnm1.ann1.4LVT1K Arachis hypogaea HOM05D003997 ORTHO05D002698 6.4e-15 85.1 72 61.1
CAN.G1237.44 Capsicum annuum HOM05D003997 ORTHO05D002698 5.4e-14 82.0 83 57.8
Pp3c8_16210 Physcomitrium patens HOM05D003997 ORTHO05D002698 1.2e-13 80.9 157 40.8
SMO228G0153 Selaginella moellendorffii HOM05D003997 ORTHO05D002698 2.7e-13 79.7 108 44.4
Gohir.D09G129100 Gossypium hirsutum HOM05D003997 ORTHO05D002698 1.0e-12 77.8 88 54.5
RcHm_v2.0_Chr4g0386011 Rosa chinensis HOM05D003997 ORTHO05D002698 1.0e-12 77.8 105 49.5
CDE02G4432 Ceratophyllum demersum HOM05D003997 ORTHO05D002698 3.0e-12 76.3 124 43.5
Haze_20104 Corylus avellana HOM05D003997 ORTHO05D002698 5.1e-12 75.5 180 37.8
BolSC101t60211H Brassica oleracea HOM05D003997 ORTHO05D002698 4.3e-11 72.4 45 73.3
FvH4_4g00560 Fragaria vesca HOM05D003997 ORTHO05D002698 4.3e-11 72.4 105 47.6
FAN12G0168 Fragaria x ananassa HOM05D003997 ORTHO05D002698 4.3e-11 72.4 105 47.6
FAN12G3167 Fragaria x ananassa HOM05D003997 ORTHO05D002698 9.6e-11 71.2 58 62.1
Nitab4.5_0007356g0020 Nicotiana tabacum HOM05D003997 ORTHO05D002698 9.6e-11 71.2 47 70.2
PGSC0003DMG400034098 Solanum tuberosum HOM05D003997 ORTHO05D002698 1.6e-10 70.5 45 71.1
Mapoly0001s0445 Marchantia polymorpha HOM05D003997 ORTHO05D002698 1.4e-09 67.4 113 45.1
Glyma.03G011366 Glycine max HOM05D003997 ORTHO05D002698 1.8e-09 67.0 40 92.5
Glyma.15G277200 Glycine max HOM05D003997 ORTHO05D002698 1.8e-09 67.0 40 92.5
Glyma.06G325402 Glycine max HOM05D003438 ORTHO05D004235 2.0e-08 63.5 38 92.1
Glyma.06G325566 Glycine max HOM05D003438 ORTHO05D004235 2.0e-08 63.5 38 92.1
Glyma.13G107000 Glycine max HOM05D003438 ORTHO05D004235 2.0e-08 63.5 38 92.1
Rhsim03G0060300 Rhododendron simsii HOM05D003997 ORTHO05D002698 1.3e-07 60.8 60 56.7
Rhsim03G0060600 Rhododendron simsii HOM05D003997 ORTHO05D002698 1.3e-07 60.8 60 56.7
PGR142G0313 Punica granatum HOM05D003997 ORTHO05D002698 2.2e-07 60.1 104 43.3
Solyc03g044440.2 Solanum lycopersicum HOM05D003997 ORTHO05D002698 6.4e-07 58.5 45 62.2
PRCOL_00001286 Prasinoderma coloniale HOM05D003997 ORTHO05D002698 1.1e-06 57.8 66 43.9
FAN12G2504 Fragaria x ananassa HOM05D003997 ORTHO05D002698 3.2e-06 56.2 45 62.2
FAN17G2484 Fragaria x ananassa HOM05D003997 ORTHO05D002698 3.2e-06 56.2 45 62.2


User provided reference genes

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