Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G104600 Phaseolus vulgaris HOM05D003564 ORTHO05D015539 9.4e-136 486.9 248 100.0
Phvul.003G116700 Phaseolus vulgaris HOM05D003564 ORTHO05D005332 4.4e-109 398.3 286 77.6
VMungo1215G0911 Vigna mungo HOM05D003564 ORTHO05D005332 1.3e-105 386.7 286 74.8
Glyma.17G035800 Glycine max HOM05D003564 ORTHO05D005332 2.9e-105 385.6 286 75.2
Glyma.07G237700 Glycine max HOM05D003564 ORTHO05D005332 3.8e-105 385.2 286 74.8
arahy.Tifrunner.gnm1.ann1.5PE0GF Arachis hypogaea HOM05D003564 ORTHO05D005332 1.6e-98 363.2 286 70.6
Ca_21413_v3 Cicer arietinum L. HOM05D003564 ORTHO05D005332 2.0e-98 362.8 286 71.0
Lj4g0010100 Lotus japonicus HOM05D003564 ORTHO05D005332 5.9e-98 361.3 286 69.9
arahy.Tifrunner.gnm1.ann1.W3XDQ4 Arachis hypogaea HOM05D003564 ORTHO05D005332 1.0e-97 360.5 286 69.9
Lalb_Chr12g0200801 Lupinus albus HOM05D003564 ORTHO05D005332 3.8e-97 358.6 286 68.9
Lj6g0012179 Lotus japonicus HOM05D003564 ORTHO05D005332 1.8e-94 349.7 286 68.2
TPR.G25421 Trifolium pratense HOM05D003564 ORTHO05D005332 4.0e-94 348.6 286 68.5
Medtr4g122670 Medicago truncatula HOM05D003564 ORTHO05D005332 5.2e-94 348.2 286 68.9
Lalb_Chr07g0181971 Lupinus albus HOM05D003564 ORTHO05D005332 2.6e-93 345.9 286 67.1
Psat4g021800 Pisum sativum HOM05D003564 ORTHO05D005332 2.6e-93 345.9 286 68.2
Manes.15G001800 Manihot esculenta HOM05D003564 ORTHO05D005332 7.5e-93 344.4 286 66.1
COL.COLO4_34584 Corchorus olitorius HOM05D003564 ORTHO05D005332 6.3e-92 341.3 286 65.4
Duzib212G0473 Durio zibethinus HOM05D003564 ORTHO05D005332 1.8e-91 339.7 286 65.7
Sopen01g023960 Solanum pennellii HOM05D003564 ORTHO05D005332 1.8e-91 339.7 286 65.4
THA.LOC104818876 Tarenaya hassleriana HOM05D003564 ORTHO05D005332 1.8e-91 339.7 286 66.1
Manes.03G206800 Manihot esculenta HOM05D003564 ORTHO05D005332 2.4e-91 339.3 286 65.4
Ciclev10004814m.g Citrus clementina HOM05D003564 ORTHO05D005332 1.2e-90 337.0 286 64.0
HanXRQChr05g0146131 Helianthus annuus HOM05D003564 ORTHO05D005332 2.7e-90 335.9 286 65.4
Solyc01g058390.3 Solanum lycopersicum HOM05D003564 ORTHO05D005332 2.7e-90 335.9 286 64.7
TWI09G1018 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 2.7e-90 335.9 286 64.3
PGSC0003DMG400017095 Solanum tuberosum HOM05D003564 ORTHO05D005332 4.5e-90 335.1 286 65.0
QL06p012801 Quercus lobata HOM05D003564 ORTHO05D005332 7.8e-90 334.3 285 64.9
Sc13g0007180 Simmondsia chinensis HOM05D003564 ORTHO05D005332 1.0e-89 334.0 286 65.7
Aa31LG5G17120 Aethionema arabicum HOM05D003564 ORTHO05D005332 2.9e-89 332.4 286 64.3
BraA01t04431Z Brassica rapa HOM05D003564 ORTHO05D005332 3.8e-89 332.0 286 64.7
AL3G17620 Arabidopsis lyrata HOM05D003564 ORTHO05D005332 5.0e-89 331.6 286 64.0
Sp3g05510 Schrenkiella parvula HOM05D003564 ORTHO05D005332 6.6e-89 331.3 286 64.3
Thhalv10020583m.g Eutrema salsugineum HOM05D003564 ORTHO05D005332 8.6e-89 330.9 286 64.0
Gohir.A09G241000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 8.6e-89 330.9 286 63.3
PGR004G2289 Punica granatum HOM05D003564 ORTHO05D005332 8.6e-89 330.9 286 64.7
AT3G06580 Arabidopsis thaliana HOM05D003564 ORTHO05D005332 1.1e-88 330.5 286 63.6
Carub.0003s0604 Capsella rubella HOM05D003564 ORTHO05D005332 1.1e-88 330.5 286 64.0
Potri.010G148100 Populus trichocarpa HOM05D003564 ORTHO05D005332 1.1e-88 330.5 286 64.7
Ah.07g201490 Amaranthus hybridus HOM05D003564 ORTHO05D005332 1.5e-88 330.1 286 63.6
ClCG05G006670 Citrullus lanatus HOM05D003564 ORTHO05D005332 1.5e-88 330.1 286 64.3
Hma1.2p1_0078F.1_g039870 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 1.5e-88 330.1 287 64.5
Nn3g21762 Nelumbo nucifera HOM05D003564 ORTHO05D005332 1.5e-88 330.1 286 65.0
C05p60630 Brassica napus HOM05D003564 ORTHO05D001609 1.9e-88 329.7 286 64.3
BolC5t34726H Brassica oleracea HOM05D003564 ORTHO05D005332 1.9e-88 329.7 286 64.3
CAN.G281.5 Capsicum annuum HOM05D003564 ORTHO05D005332 2.5e-88 329.3 283 64.0
Thecc.04G304400 Theobroma cacao HOM05D003564 ORTHO05D005332 2.5e-88 329.3 276 65.9
BNapus_Darmor_BZH_scaffold_118p00030 Brassica napus HOM05D003564 ORTHO05D001609 3.3e-88 328.9 286 64.0
CSS0022249 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 3.3e-88 328.9 286 64.3
Gohir.D09G241800 Gossypium hirsutum HOM05D003564 ORTHO05D005332 3.3e-88 328.9 286 62.9
Nitab4.5_0000655g0040 Nicotiana tabacum HOM05D003564 ORTHO05D005332 3.3e-88 328.9 286 63.6
A05p41470 Brassica napus HOM05D003564 ORTHO05D005332 4.3e-88 328.6 282 64.5
CARHR081120 Cardamine hirsuta HOM05D003564 ORTHO05D005332 4.3e-88 328.6 286 64.0
Gorai.006G265300 Gossypium raimondii HOM05D003564 ORTHO05D005332 4.3e-88 328.6 286 62.6
Lj6A693T63 Lonicera japonica HOM05D003564 ORTHO05D005332 4.3e-88 328.6 286 64.3
Peaxi162Scf00228g00614 Petunia axillaris HOM05D003564 ORTHO05D005332 4.3e-88 328.6 286 63.6
Nitab4.5_0005111g0010 Nicotiana tabacum HOM05D003564 ORTHO05D005332 5.6e-88 328.2 286 63.6
FvH4_4g20200 Fragaria vesca HOM05D003564 ORTHO05D005332 7.3e-88 327.8 286 64.0
PGR031G2439 Punica granatum HOM05D003564 ORTHO05D005332 7.3e-88 327.8 286 64.7
TWI73G0893 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 7.3e-88 327.8 286 63.6
BraA05t22867Z Brassica rapa HOM05D003564 ORTHO05D005332 9.5e-88 327.4 282 64.2
Eucgr.H04065 Eucalyptus grandis HOM05D003564 ORTHO05D005332 9.5e-88 327.4 286 63.6
Haze_01331 Corylus avellana HOM05D003564 ORTHO05D005332 1.2e-87 327.0 286 64.0
Haze_01336 Corylus avellana HOM05D003564 ORTHO05D005332 1.2e-87 327.0 286 64.0
TAR633G1064 Trochodendron aralioides HOM05D003564 ORTHO05D005332 1.2e-87 327.0 286 64.0
ECA246G5316 Erigeron canadensis HOM05D003564 ORTHO05D005332 2.1e-87 326.2 278 65.1
FAN07G2223 Fragaria x ananassa HOM05D003564 ORTHO05D005332 2.8e-87 325.9 286 63.3
Potri.008G102800 Populus trichocarpa HOM05D003564 ORTHO05D005332 2.8e-87 325.9 286 64.7
Hund11987 Selenicereus undatus HOM05D003564 ORTHO05D005332 3.6e-87 325.5 286 64.0
GSVIVG01034964001 Vitis vinifera HOM05D003564 ORTHO05D005332 3.6e-87 325.5 286 62.9
ATR0693G053 Amborella trichopoda HOM05D003564 ORTHO05D005332 4.7e-87 325.1 286 62.9
Ciclev10004815m.g Citrus clementina HOM05D003564 ORTHO05D005332 4.7e-87 325.1 286 62.9
CsaV3_3G015300 Cucumis sativus L. HOM05D003564 ORTHO05D005332 4.7e-87 325.1 286 64.0
Gohir.A01G035000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 4.7e-87 325.1 286 62.9
Oeu027343.1 Olea europaea HOM05D003564 ORTHO05D005332 4.7e-87 325.1 286 62.2
Sabra10G0114300 Salix brachista HOM05D003564 ORTHO05D005332 4.7e-87 325.1 286 64.0
CiPaw.02G073000 Carya illinoinensis HOM05D003564 ORTHO05D005332 6.1e-87 324.7 286 64.3
Peaxi162Scf00164g00106 Petunia axillaris HOM05D003564 ORTHO05D005332 6.1e-87 324.7 286 63.3
CiPaw.01G136200 Carya illinoinensis HOM05D003564 ORTHO05D005332 8.0e-87 324.3 286 62.9
MELO3C006726.2 Cucumis melo HOM05D003564 ORTHO05D005332 8.0e-87 324.3 285 63.2
FAN12G0614 Fragaria x ananassa HOM05D003564 ORTHO05D005332 8.0e-87 324.3 290 63.4
Gohir.D01G023559 Gossypium hirsutum HOM05D003564 ORTHO05D005332 8.0e-87 324.3 286 62.2
Gorai.002G030900 Gossypium raimondii HOM05D003564 ORTHO05D005332 8.0e-87 324.3 286 62.2
MD16G1150400 Malus domestica HOM05D003564 ORTHO05D005332 8.0e-87 324.3 286 63.3
Oeu001157.1 Olea europaea HOM05D003564 ORTHO05D005332 1.0e-86 323.9 286 62.2
Hma1.2p1_1400F.1_g280900 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 1.4e-86 323.6 296 62.5
Actinidia13349 Actinidia chinensis HOM05D003564 ORTHO05D005332 1.8e-86 323.2 286 63.3
CSS0008875 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 1.8e-86 323.2 285 63.2
AUR62016236 Chenopodium quinoa HOM05D003564 ORTHO05D005332 1.8e-86 323.2 286 62.9
BolC1t05602H Brassica oleracea HOM05D003564 ORTHO05D005332 3.1e-86 322.4 286 63.3
CANSAT80G1613 Cannabis sativa HOM05D003564 ORTHO05D005332 3.1e-86 322.4 286 64.0
AUR62039254 Chenopodium quinoa HOM05D003564 ORTHO05D005332 3.1e-86 322.4 286 63.3
MD13G1150000 Malus domestica HOM05D003564 ORTHO05D005332 3.1e-86 322.4 286 63.3
Hma1.2p1_0013F.1_g008310 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 4.0e-86 322.0 286 62.6
Sed0008581 Sechium edule HOM05D003564 ORTHO05D005332 4.0e-86 322.0 286 61.9
EL10Ac3g05000 Beta vulgaris HOM05D003564 ORTHO05D005332 6.8e-86 321.2 286 63.3
CANSAT78G0776 Cannabis sativa HOM05D003564 ORTHO05D005332 2.0e-85 319.7 286 62.2
RcHm_v2.0_Chr4g0425841 Rosa chinensis HOM05D003564 ORTHO05D005332 2.0e-85 319.7 286 62.6
Sed0006353 Sechium edule HOM05D003564 ORTHO05D005332 2.0e-85 319.7 286 62.6
MSTRG.24826 Avicennia marina HOM05D003564 ORTHO05D005332 4.4e-85 318.5 286 62.2
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 4.4e-85 318.5 288 63.5
Rhsim02G0002600 Rhododendron simsii HOM05D003564 ORTHO05D005332 4.4e-85 318.5 286 62.2
MSTRG.21761 Avicennia marina HOM05D003564 ORTHO05D005332 5.8e-85 318.2 286 61.9
Prupe.1G114000 Prunus persica HOM05D003564 ORTHO05D005332 5.8e-85 318.2 286 61.9
Aqoxy2G02668 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 1.3e-84 317.0 286 61.9
Rhsim04G0241100 Rhododendron simsii HOM05D003564 ORTHO05D005332 1.3e-84 317.0 286 61.9
Oeu046580.1 Olea europaea HOM05D003564 ORTHO05D005332 4.9e-84 315.1 286 61.5
PSO673G0015 Papaver somniferum HOM05D003564 ORTHO05D005332 4.9e-84 315.1 284 61.6
Lsat_1_v5_gn_6_116000 Lactuca sativa HOM05D003564 ORTHO05D005332 6.4e-84 314.7 281 62.3
PSO421G0363 Papaver somniferum HOM05D003564 ORTHO05D005332 6.4e-84 314.7 284 61.6
PSO724G1094 Papaver somniferum HOM05D003564 ORTHO05D005332 8.3e-84 314.3 286 61.5
Lj3A833G36 Lonicera japonica HOM05D003564 ORTHO05D005332 1.1e-83 313.9 284 63.0
PSO210G4867 Papaver somniferum HOM05D003564 ORTHO05D005332 1.4e-83 313.5 286 61.5
vmacro07948 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 1.9e-83 313.2 286 60.8
Actinidia18464 Actinidia chinensis HOM05D003564 ORTHO05D005332 3.2e-83 312.4 285 61.1
BraA03t12654Z Brassica rapa HOM05D003564 ORTHO05D005332 3.2e-83 312.4 286 61.2
A03p34740 Brassica napus HOM05D003564 ORTHO05D005332 5.4e-83 311.6 286 61.2
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 5.4e-83 311.6 233 70.8
Migut.N00033 Erythranthe guttata HOM05D003564 ORTHO05D005332 7.0e-83 311.2 286 60.8
TAR362G0511 Trochodendron aralioides HOM05D003564 ORTHO05D005332 7.0e-83 311.2 233 71.7
Atru.BG.89.p Acer truncatum HOM05D003564 ORTHO05D005332 4.6e-82 308.5 283 64.0
CDE01G0090 Ceratophyllum demersum HOM05D003564 ORTHO05D005332 2.3e-81 306.2 286 59.8
SalBow5G4452 Salvia bowleyana HOM05D003564 ORTHO05D005332 2.3e-81 306.2 287 61.0
unitig_22.g6346 Utricularia gibba HOM05D003564 ORTHO05D005332 3.0e-81 305.8 286 60.5
HPP92_001226 Vanilla planifolia HOM05D003564 ORTHO05D005332 5.0e-81 305.1 286 60.1
vmacro15172 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 8.6e-81 304.3 340 53.8
Zm00001eb063430 Zea mays HOM05D003564 ORTHO05D005332 1.5e-80 303.5 286 60.1
DCAR_023360 Daucus carota HOM05D003564 ORTHO05D005332 4.3e-80 302.0 286 60.1
CANSAT21G1208 Cannabis sativa HOM05D003564 ORTHO05D005332 1.2e-79 300.4 233 68.7
SEGI_35047 Sequoiadendron giganteum HOM05D003564 ORTHO05D005332 1.6e-79 300.1 286 59.8
Sabra08G0077700 Salix brachista HOM05D003564 ORTHO05D005332 2.1e-79 299.7 339 54.0
unitig_8.g3092 Utricularia gibba HOM05D001060 ORTHO05D000905 2.8e-79 299.3 284 58.8
Aa31LG2G16960 Aethionema arabicum HOM05D003564 ORTHO05D005332 4.7e-79 298.5 286 61.2
DCAR_026993 Daucus carota HOM05D003564 ORTHO05D005332 4.0e-78 295.4 303 57.8
Os03g0832600 Oryza sativa ssp. japonica HOM05D003564 ORTHO05D005332 3.4e-77 292.4 286 58.4
SGA_v2.0_scaffold367G50068 Striga asiatica HOM05D003564 ORTHO05D005332 7.0e-75 284.6 286 57.7
Dinv15142 Davidia involucrata HOM05D003564 ORTHO05D005332 1.4e-70 270.4 195 72.3
Nitab4.5_0000647g0260 Nicotiana tabacum HOM05D003564 ORTHO05D005332 6.8e-70 268.1 285 54.4
Hund03137 Selenicereus undatus HOM05D003564 ORTHO05D005332 5.8e-69 265.0 302 55.0
Nitab4.5_0004165g0030 Nicotiana tabacum HOM05D003564 ORTHO05D005332 7.5e-69 264.6 197 71.1
MBI19_g03266_MAGBIO Magnolia biondii HOM05D003564 ORTHO05D005332 9.9e-69 264.2 230 64.3
Pp3c9_18770 Physcomitrium patens HOM05D003564 ORTHO05D005332 2.9e-68 262.7 286 51.7
Cpa.g.sc9.29 Carica papaya HOM05D003564 ORTHO05D005332 8.3e-68 261.2 253 61.7
SMO340G0013 Selaginella moellendorffii HOM05D003564 ORTHO05D005332 8.3e-68 261.2 283 53.0
Pp3c19_13990 Physcomitrium patens HOM05D003564 ORTHO05D005332 3.2e-67 259.2 286 53.1
SGA_v2.0_scaffold227G43230 Striga asiatica HOM05D003564 ORTHO05D005332 9.5e-64 247.7 286 52.8
AagrBONN_evm.TU.Sc2ySwM_117.3800 Anthoceros agrestis HOM05D003564 ORTHO05D005332 4.7e-63 245.4 286 50.0
Atru.chr5.3350 Acer truncatum HOM05D003564 ORTHO05D005332 4.9e-60 235.3 170 73.5
Cc03_g00640 Coffea canephora HOM05D003564 ORTHO05D005332 1.0e-57 227.6 173 70.5
Mapoly0046s0013 Marchantia polymorpha HOM05D003564 ORTHO05D005332 1.7e-57 226.9 285 49.8
Mapoly0068s0036 Marchantia polymorpha HOM05D003564 ORTHO05D005332 2.3e-57 226.5 286 51.0
SHI00111 Sapria himalayana HOM05D003564 ORTHO05D005332 5.4e-51 205.3 171 63.2
BolC3t16502H Brassica oleracea HOM05D003564 ORTHO05D005332 1.6e-50 203.8 286 46.9
PSO673G0028 Papaver somniferum HOM05D003564 ORTHO05D015539 3.9e-49 199.1 169 62.7
CBR_g24145 Chara braunii HOM05D003564 ORTHO05D005332 8.1e-47 191.4 309 44.3
CSS0008122 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D015539 6.9e-46 188.3 146 69.9
Glyma.08G358766 Glycine max HOM05D003564 ORTHO05D015539 9.0e-46 188.0 147 67.3
CSS0033456 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D015539 5.8e-45 185.3 146 68.5
PSO761G0547 Papaver somniferum HOM05D003564 ORTHO05D005332 7.6e-45 184.9 146 66.4
MCO14G377 Micromonas commoda HOM05D003564 ORTHO05D005332 1.1e-38 164.5 285 42.1
PRCOL_00002578 Prasinoderma coloniale HOM05D003564 ORTHO05D005332 6.9e-38 161.8 284 39.8
Cre17.g732300 Chlamydomonas reinhardtii HOM05D003564 ORTHO05D005332 9.3e-35 151.4 244 43.0
CAN.G311.69 Capsicum annuum HOM05D003564 ORTHO05D005332 1.5e-32 144.1 104 72.1
CAN.G311.70 Capsicum annuum HOM05D003564 ORTHO05D028498 9.6e-32 141.4 143 57.3
Lsat_1_v5_gn_2_75340 Lactuca sativa HOM05D003564 ORTHO05D015539 6.9e-30 135.2 100 70.0
Lsat_1_v5_gn_1_7420 Lactuca sativa HOM05D003564 ORTHO05D001424 9.0e-30 134.8 100 69.0
Actinidia14250 Actinidia chinensis HOM05D003564 ORTHO05D004310 1.7e-28 130.6 150 52.7
Aqoxy6G00955 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 1.2e-26 124.4 138 52.2
Aqoxy2G02665 Aquilegia oxysepala HOM05D000882 ORTHO05D001142 9.7e-24 114.8 139 51.8
Thecc.02G173700 Theobroma cacao HOM05D003564 ORTHO05D005332 1.8e-22 110.5 61 90.2
Sopen01g020110 Solanum pennellii HOM05D003564 ORTHO05D015539 4.1e-22 109.4 74 78.4
Hma1.2p1_0760F.1_g214160 Hydrangea macrophylla HOM05D003564 ORTHO05D015539 3.2e-19 99.8 77 66.2
Hma1.2p1_0213F.1_g090610 Hydrangea macrophylla HOM05D003564 ORTHO05D015539 1.2e-18 97.8 77 64.9
Hma1.2p1_0014F.1_g009450 Hydrangea macrophylla HOM05D003564 ORTHO05D015539 3.6e-18 96.3 59 76.3
TAR365G0172 Trochodendron aralioides HOM05D003564 ORTHO05D028498 3.6e-18 96.3 140 44.3
Cc03_g00630 Coffea canephora HOM05D003564 ORTHO05D028498 1.0e-17 94.7 110 50.9
Haze_26210 Corylus avellana HOM05D003564 ORTHO05D005332 7.4e-16 88.6 240 32.1
Glyma.08G358832 Glycine max HOM05D003564 ORTHO05D028498 7.4e-16 88.6 110 48.2
Lsat_1_v5_gn_5_163121 Lactuca sativa HOM05D003564 ORTHO05D230188 6.3e-15 85.5 126 43.7
HanXRQChr14g0435401 Helianthus annuus HOM05D003564 ORTHO05D015539 6.9e-14 82.0 96 51.0
Cfa026431 Carpinus fangiana HOM05D003564 ORTHO05D005332 2.6e-13 80.1 260 32.3
TAR365G0167 Trochodendron aralioides HOM05D003564 ORTHO05D024794 6.5e-12 75.5 88 51.1
Sc06g0010690 Simmondsia chinensis HOM05D003564 ORTHO05D389581 2.2e-07 60.5 63 47.6
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 2.8e-07 60.1 52 59.6
SGA_v2.0_scaffold18G08519 Striga asiatica HOM05D030373 ORTHO05D030073 4.8e-07 59.3 41 73.2


User provided reference genes

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