Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 8.4e-252 873.6 584 100.0
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 5.9e-197 691.4 587 76.1
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 9.7e-184 647.5 579 77.5
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 1.8e-145 520.4 616 56.8
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 5.2e-137 492.3 615 56.7
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 4.4e-136 489.2 595 60.3
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 1.7e-135 487.3 595 55.3
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 2.2e-127 460.3 596 56.0
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 3.5e-117 426.4 587 48.9
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 1.9e-115 420.6 587 51.6
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 7.4e-115 418.7 557 51.5
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 7.4e-115 418.7 629 55.5
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 4.0e-113 412.9 628 44.7
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 1.5e-112 411.0 626 48.1
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 8.4e-111 405.2 579 44.7
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 1.1e-110 404.8 608 44.9
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 2.5e-110 403.7 600 49.7
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 1.2e-109 401.4 595 54.5
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 3.9e-108 396.4 604 44.4
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 6.2e-106 389.0 605 47.1
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 1.4e-105 387.9 601 46.4
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 4.1e-105 386.3 583 48.7
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 6.9e-105 385.6 599 53.6
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 3.4e-104 383.3 601 45.9
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 8.4e-103 378.6 646 44.0
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 1.9e-102 377.5 588 45.2
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 5.5e-102 375.9 588 47.8
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 3.5e-101 373.2 635 52.1
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 1.3e-100 371.3 635 47.1
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 3.0e-100 370.2 548 49.3
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 1.9e-99 367.5 589 55.2
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 1.9e-99 367.5 595 47.7
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 5.7e-99 365.9 609 51.1
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 2.8e-98 363.6 606 51.7
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 4.8e-98 362.8 584 50.3
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 8.2e-98 362.1 591 48.7
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 1.1e-97 361.7 608 45.9
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 1.1e-97 361.7 588 48.3
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.4e-97 361.3 618 47.7
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.8e-97 360.9 618 46.9
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 2.4e-97 360.5 625 41.9
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 3.1e-97 360.1 591 41.3
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 4.1e-97 359.8 605 47.6
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 9.0e-97 358.6 600 48.0
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 3.4e-96 356.7 588 45.6
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 2.9e-95 353.6 629 44.2
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 6.5e-95 352.4 553 41.4
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 8.5e-95 352.1 589 46.3
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 1.4e-94 351.3 547 45.7
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 5.5e-94 349.4 605 46.0
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 5.5e-94 349.4 582 41.8
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 6.1e-93 345.9 596 45.1
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 1.4e-92 344.7 609 48.3
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 2.0e-91 340.9 588 48.5
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 4.3e-91 339.7 628 43.8
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 5.7e-91 339.3 582 48.1
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 1.3e-90 338.2 590 50.3
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 4.8e-90 336.3 526 49.2
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 3.1e-89 333.6 592 47.6
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 3.1e-89 333.6 658 45.7
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 5.3e-89 332.8 589 50.4
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 5.3e-89 332.8 589 49.4
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 6.9e-89 332.4 587 50.3
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.2e-88 331.6 188 99.5
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 2.6e-88 330.5 617 47.8
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 2.6e-88 330.5 590 50.0
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 5.9e-88 329.3 561 44.9
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 1.9e-86 324.3 594 49.0
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 2.5e-86 323.9 583 49.2
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 3.6e-85 320.1 607 47.0
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 6.7e-84 315.8 589 47.4
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.0e-83 314.3 590 41.7
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 7.4e-83 312.4 590 46.6
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 1.7e-82 311.2 589 45.0
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.7e-82 311.2 589 45.0
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 1.7e-82 311.2 593 49.6
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 3.7e-82 310.1 613 43.4
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 2.4e-81 307.4 594 41.9
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 4.1e-81 306.6 592 51.0
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 4.1e-81 306.6 614 40.4
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 1.2e-80 305.1 595 43.2
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 3.5e-80 303.5 641 39.9
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 7.7e-80 302.4 587 49.6
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 7.7e-80 302.4 584 43.2
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 2.2e-79 300.8 228 67.1
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 1.1e-78 298.5 543 44.2
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 1.2e-77 295.0 591 42.0
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 2.7e-77 293.9 238 63.4
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 7.5e-75 285.8 563 42.6
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 1.3e-74 285.0 641 44.1
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 5.9e-72 276.2 266 60.9
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 7.7e-72 275.8 244 58.6
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 1.6e-69 268.1 614 42.5
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 6.1e-69 266.2 582 40.7
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 5.2e-68 263.1 216 67.1
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 7.0e-65 252.7 158 86.1
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 1.0e-63 248.8 556 42.1
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 2.5e-62 244.2 233 56.2
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 9.4e-62 242.3 227 56.4
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 1.6e-61 241.5 608 38.2
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 1.7e-58 231.5 148 73.6
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 1.4e-57 228.4 169 81.1
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 3.1e-57 227.3 113 92.9
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 5.9e-56 223.0 501 39.3
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 1.9e-54 218.0 113 87.6
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 3.3e-54 217.2 621 38.8
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 3.3e-54 217.2 235 49.8
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 1.2e-53 215.3 216 54.2
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 4.7e-53 213.4 168 63.1
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.4e-52 211.8 167 62.9
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 1.8e-52 211.5 213 51.6
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 1.8e-52 211.5 118 80.5
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 4.0e-52 210.3 179 59.8
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 4.4e-51 206.8 149 64.4
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 4.9e-50 203.4 409 47.4
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 6.4e-50 203.0 203 55.7
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 7.0e-49 199.5 152 62.5
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 1.0e-47 195.7 216 49.1
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 3.9e-47 193.7 237 49.4
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 1.0e-44 185.7 222 46.8
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 8.9e-44 182.6 149 59.1
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 2.9e-42 177.6 478 47.5
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 1.9e-41 174.9 448 38.8
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 2.5e-38 164.5 86 83.7
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 2.5e-38 164.5 86 83.7
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 7.3e-30 136.3 195 41.0
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 2.1e-29 134.8 256 33.2
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 1.4e-28 132.1 300 47.0
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 2.2e-26 124.8 144 59.0
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.7e-26 124.0 411 39.9
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.7e-26 124.0 411 39.9
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 3.7e-26 124.0 98 63.3
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 6.4e-26 123.2 520 30.0
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 8.4e-26 122.9 191 45.0
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 6.0e-24 116.7 162 43.8
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 2.3e-23 114.8 182 47.3
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 5.1e-23 113.6 227 50.2
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 4.3e-22 110.5 144 56.2
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 2.1e-21 108.2 141 58.9
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 1.1e-20 105.9 206 35.0
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 2.9e-18 97.8 347 34.9
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 3.8e-18 97.4 56 73.2
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 4.2e-17 94.0 138 43.5
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 9.3e-17 92.8 66 62.1
TPR.G17657 Trifolium pratense HOM05D004380 ORTHO05D005134 3.0e-15 87.8 158 39.9
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 8.7e-15 86.3 102 51.0
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 2.6e-11 74.7 115 38.3
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 3.8e-10 70.9 64 57.8
Medtr4g081725 Medicago truncatula HOM05D004380 ORTHO05D005134 6.4e-10 70.1 68 58.8
TPR.G23078 Trifolium pratense HOM05D004380 ORTHO05D005134 1.3e-07 62.4 41 78.0
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 5.1e-07 60.5 87 46.0
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 1.5e-06 58.9 47 59.6


User provided reference genes

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