Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G075301 Phaseolus vulgaris HOM05D000169 ORTHO05D004437 2.0e-86 322.4 161 100.0
Phvul.004G114600 Phaseolus vulgaris HOM05D000169 ORTHO05D004437 8.8e-26 120.9 61 96.7
VMungo0464G1551 Vigna mungo HOM05D000169 ORTHO05D004437 3.7e-24 115.5 61 90.2
Glyma.11G198300 Glycine max HOM05D000169 ORTHO05D004437 8.2e-24 114.4 61 90.2
VMungo0540G2085 Vigna mungo HOM05D000169 ORTHO05D004437 1.8e-23 113.2 61 86.9
Lj2g0018183 Lotus japonicus HOM05D000169 ORTHO05D004437 6.9e-23 111.3 61 86.9
Glyma.09G138100 Glycine max HOM05D000169 ORTHO05D004437 2.6e-22 109.4 61 83.6
arahy.Tifrunner.gnm1.ann1.0K51C9 Arachis hypogaea HOM05D000169 ORTHO05D004437 3.4e-22 109.0 61 86.9
arahy.Tifrunner.gnm1.ann1.4R282L Arachis hypogaea HOM05D000169 ORTHO05D004437 3.4e-22 109.0 61 86.9
Phvul.006G079500 Phaseolus vulgaris HOM05D000169 ORTHO05D004437 5.9e-22 108.2 61 83.6
Lalb_Chr19g0130791 Lupinus albus HOM05D000169 ORTHO05D004437 7.7e-22 107.8 61 83.6
TPR.G8165 Trifolium pratense HOM05D000169 ORTHO05D004437 7.7e-22 107.8 61 83.6
Lalb_Chr03g0034601 Lupinus albus HOM05D000169 ORTHO05D004437 2.2e-21 106.3 61 82.0
Psat0s2062g0040 Pisum sativum HOM05D000169 ORTHO05D004437 2.9e-21 105.9 61 83.6
Medtr3g035130 Medicago truncatula HOM05D000169 ORTHO05D004437 5.0e-21 105.1 61 82.0
Glyma.20G159300 Glycine max HOM05D000169 ORTHO05D004437 6.5e-21 104.8 61 82.0
Phvul.007G071000 Phaseolus vulgaris HOM05D000169 ORTHO05D004437 1.1e-20 104.0 61 82.0
vmacro06671 Vaccinium macrocarpon HOM05D000169 ORTHO05D004437 1.1e-20 104.0 61 82.0
ClCG01G002840 Citrullus lanatus HOM05D000169 ORTHO05D004437 1.4e-20 103.6 61 80.3
Actinidia34118 Actinidia chinensis HOM05D000169 ORTHO05D004437 2.5e-20 102.8 61 78.7
Dinv28432 Davidia involucrata HOM05D000169 ORTHO05D004437 2.5e-20 102.8 61 78.7
FAN04G0756 Fragaria x ananassa HOM05D000169 ORTHO05D004437 2.5e-20 102.8 61 80.3
FAN08G0565 Fragaria x ananassa HOM05D000169 ORTHO05D004437 2.5e-20 102.8 61 80.3
QL09p013995 Quercus lobata HOM05D000169 ORTHO05D004437 2.5e-20 102.8 61 78.7
TAR374G0096 Trochodendron aralioides HOM05D000169 ORTHO05D004437 2.5e-20 102.8 61 80.3
Manes.01G062800 Manihot esculenta HOM05D000169 ORTHO05D004437 5.5e-20 101.7 61 80.3
Nitab4.5_0001842g0060 Nicotiana tabacum HOM05D000169 ORTHO05D004437 5.5e-20 101.7 61 77.0
Nitab4.5_0002394g0060 Nicotiana tabacum HOM05D000169 ORTHO05D004437 5.5e-20 101.7 61 77.0
Peaxi162Scf00444g00836 Petunia axillaris HOM05D000169 ORTHO05D004437 7.2e-20 101.3 61 77.0
Sed0004975 Sechium edule HOM05D000169 ORTHO05D004437 9.4e-20 100.9 61 75.4
Cfa012159 Carpinus fangiana HOM05D000169 ORTHO05D004437 1.2e-19 100.5 61 75.4
Actinidia32854 Actinidia chinensis HOM05D000169 ORTHO05D004437 1.6e-19 100.1 61 75.4
Aqoxy7G00354 Aquilegia oxysepala HOM05D000169 ORTHO05D004437 1.6e-19 100.1 61 77.0
CAN.G307.4 Capsicum annuum HOM05D000169 ORTHO05D004437 1.6e-19 100.1 61 75.4
FvH4_5g02080 Fragaria vesca HOM05D000169 ORTHO05D004437 1.6e-19 100.1 61 77.0
Peaxi162Scf01969g00022 Petunia axillaris HOM05D000169 ORTHO05D004437 1.6e-19 100.1 61 73.8
Solyc03g025720.3 Solanum lycopersicum HOM05D000169 ORTHO05D004437 2.1e-19 99.8 61 75.4
Sopen03g004540 Solanum pennellii HOM05D000169 ORTHO05D004437 2.7e-19 99.4 61 73.8
TWI23G0509 Tripterygium wilfordii HOM05D000169 ORTHO05D004437 2.7e-19 99.4 60 76.7
GSVIVG01028940001 Vitis vinifera HOM05D000169 ORTHO05D004437 2.7e-19 99.4 61 77.0
Dinv35217 Davidia involucrata HOM05D000169 ORTHO05D004437 4.7e-19 98.6 61 73.8
SGA_v2.0_scaffold60G21048 Striga asiatica HOM05D000169 ORTHO05D004437 4.7e-19 98.6 61 75.4
VMungo0720G2642 Vigna mungo HOM05D000169 ORTHO05D004437 4.7e-19 98.6 61 77.0
CiPaw.03G107200 Carya illinoinensis HOM05D000169 ORTHO05D004437 6.1e-19 98.2 61 73.8
COL.COLO4_34442 Corchorus olitorius HOM05D000169 ORTHO05D004437 6.1e-19 98.2 61 77.0
DCAR_020245 Daucus carota HOM05D000169 ORTHO05D004437 6.1e-19 98.2 61 75.4
TAR375G0986 Trochodendron aralioides HOM05D000169 ORTHO05D004437 6.1e-19 98.2 61 75.4
Cpa.g.sc107.60 Carica papaya HOM05D000169 ORTHO05D004437 7.9e-19 97.8 61 73.8
PSO478G4025 Papaver somniferum HOM05D000169 ORTHO05D004437 7.9e-19 97.8 61 75.4
PGSC0003DMG400014345 Solanum tuberosum HOM05D000169 ORTHO05D004437 7.9e-19 97.8 61 72.1
Haze_08868 Corylus avellana HOM05D000169 ORTHO05D004437 1.0e-18 97.4 61 73.8
MELO3C005663.2 Cucumis melo HOM05D000169 ORTHO05D004437 1.0e-18 97.4 61 75.4
Duzib068G0999 Durio zibethinus HOM05D000169 ORTHO05D004437 1.0e-18 97.4 61 72.1
ECA232G0402 Erigeron canadensis HOM05D000169 ORTHO05D004437 1.0e-18 97.4 61 75.4
Oeu056262.2 Olea europaea HOM05D000169 ORTHO05D004437 1.0e-18 97.4 62 74.2
PSO782G4963 Papaver somniferum HOM05D000169 ORTHO05D004437 1.0e-18 97.4 61 73.8
QL12p033727 Quercus lobata HOM05D000169 ORTHO05D004437 1.0e-18 97.4 61 75.4
TWI14G0725 Tripterygium wilfordii HOM05D000169 ORTHO05D004437 1.0e-18 97.4 61 73.8
CiPaw.12G094400 Carya illinoinensis HOM05D000169 ORTHO05D004437 1.4e-18 97.1 61 73.8
Manes.14G025500 Manihot esculenta HOM05D000169 ORTHO05D004437 1.4e-18 97.1 61 73.8
Potri.001G105900 Populus trichocarpa HOM05D000169 ORTHO05D004437 1.4e-18 97.1 61 75.4
GSVIVG01019771001 Vitis vinifera HOM05D000169 ORTHO05D004437 1.4e-18 97.1 61 73.8
CiPaw.11G137100 Carya illinoinensis HOM05D000169 ORTHO05D004437 1.8e-18 96.7 61 72.1
Gohir.A08G181200 Gossypium hirsutum HOM05D000169 ORTHO05D004437 1.8e-18 96.7 61 73.8
Lj1A998T45 Lonicera japonica HOM05D000169 ORTHO05D004437 1.8e-18 96.7 61 72.1
RcHm_v2.0_Chr7g0198211 Rosa chinensis HOM05D000169 ORTHO05D004437 1.8e-18 96.7 61 73.8
CsaV3_5G002930 Cucumis sativus L. HOM05D000169 ORTHO05D004437 2.3e-18 96.3 61 73.8
Sabra01G0080200 Salix brachista HOM05D000169 ORTHO05D004437 2.3e-18 96.3 61 75.4
CANSAT21G0506 Cannabis sativa HOM05D000169 ORTHO05D004437 3.0e-18 95.9 61 75.4
Cc02_g02860 Coffea canephora HOM05D000169 ORTHO05D004437 3.0e-18 95.9 61 72.1
Lsat_1_v5_gn_9_55680 Lactuca sativa HOM05D000169 ORTHO05D004437 3.0e-18 95.9 61 73.8
MBI18_g19082_MAGBIO Magnolia biondii HOM05D000169 ORTHO05D004437 3.9e-18 95.5 61 77.0
MD06G1079100 Malus domestica HOM05D000169 ORTHO05D004437 3.9e-18 95.5 61 72.1
MD14G1102200 Malus domestica HOM05D000169 ORTHO05D004437 3.9e-18 95.5 61 73.8
Nn6g33481 Nelumbo nucifera HOM05D000169 ORTHO05D004437 3.9e-18 95.5 61 73.8
unitig_52.g17742 Utricularia gibba HOM05D000169 ORTHO05D004437 3.9e-18 95.5 68 63.2
HanXRQChr09g0253691 Helianthus annuus HOM05D000169 ORTHO05D004437 5.1e-18 95.1 61 73.8
Thecc.03G276900 Theobroma cacao HOM05D000169 ORTHO05D004437 5.1e-18 95.1 61 73.8
MSTRG.27113 Avicennia marina HOM05D000169 ORTHO05D004437 8.8e-18 94.4 61 68.9
DCAR_009369 Daucus carota HOM05D000169 ORTHO05D004437 8.8e-18 94.4 61 73.8
Sc13g0008750 Simmondsia chinensis HOM05D000169 ORTHO05D004437 8.8e-18 94.4 61 72.1
FAN13G1872 Fragaria x ananassa HOM05D000169 ORTHO05D004437 1.1e-17 94.0 61 73.8
PGSC0003DMG400029915 Solanum tuberosum HOM05D000169 ORTHO05D004437 1.1e-17 94.0 61 70.5
Duzib205G1239 Durio zibethinus HOM05D000169 ORTHO05D004437 1.5e-17 93.6 61 72.1
unitig_0.g2474 Utricularia gibba HOM05D000169 ORTHO05D004437 1.5e-17 93.6 60 71.7
Atru.chr9.2224 Acer truncatum HOM05D000169 ORTHO05D004437 2.0e-17 93.2 61 68.9
Migut.F00334 Erythranthe guttata HOM05D000169 ORTHO05D004437 2.0e-17 93.2 61 68.9
Thecc.03G177900 Theobroma cacao HOM05D000169 ORTHO05D004437 2.0e-17 93.2 61 68.9
Cpa.g.sc74.15 Carica papaya HOM05D000169 ORTHO05D004437 2.6e-17 92.8 61 72.1
Ciclev10004732m.g Citrus clementina HOM05D000169 ORTHO05D004437 2.6e-17 92.8 61 68.9
Nn1g01484 Nelumbo nucifera HOM05D000169 ORTHO05D004437 2.6e-17 92.8 61 70.5
Prupe.5G097700 Prunus persica HOM05D000169 ORTHO05D004437 3.3e-17 92.4 61 68.9
Solyc06g035960.3 Solanum lycopersicum HOM05D000169 ORTHO05D004437 3.3e-17 92.4 61 68.9
Sopen06g011740 Solanum pennellii HOM05D000169 ORTHO05D004437 3.3e-17 92.4 61 68.9
Potri.015G144700 Populus trichocarpa HOM05D000169 ORTHO05D004437 4.4e-17 92.0 61 67.2
Sed0004240 Sechium edule HOM05D000169 ORTHO05D004437 4.4e-17 92.0 60 68.3
SalBow4G0135 Salvia bowleyana HOM05D000169 ORTHO05D004437 7.4e-17 91.3 61 67.2
SalBow4G1348 Salvia bowleyana HOM05D000169 ORTHO05D004437 7.4e-17 91.3 61 67.2
CDE09G0626 Ceratophyllum demersum HOM05D000169 ORTHO05D004437 9.7e-17 90.9 61 70.5
CDE11G0733 Ceratophyllum demersum HOM05D000169 ORTHO05D004437 9.7e-17 90.9 61 70.5
AUR62021176 Chenopodium quinoa HOM05D000169 ORTHO05D004437 9.7e-17 90.9 61 68.9
Oeu022593.1 Olea europaea HOM05D000169 ORTHO05D004437 1.7e-16 90.1 61 67.2
Hund11742 Selenicereus undatus HOM05D000169 ORTHO05D004437 2.2e-16 89.7 61 67.2
CsaV3_5G004640 Cucumis sativus L. HOM05D000169 ORTHO05D004437 2.8e-16 89.4 60 68.3
MELO3C005498.2 Cucumis melo HOM05D000169 ORTHO05D004437 3.7e-16 89.0 60 70.0
Eucgr.E00577 Eucalyptus grandis HOM05D000169 ORTHO05D004437 3.7e-16 89.0 61 68.9
Phvul.007G213900 Phaseolus vulgaris HOM05D001902 ORTHO05D001973 3.7e-16 89.0 47 97.9
Hund04753 Selenicereus undatus HOM05D000169 ORTHO05D004437 6.3e-16 88.2 61 67.2
Zm00001eb434030 Zea mays HOM05D000169 ORTHO05D004437 6.3e-16 88.2 60 70.0
ATR0680G178 Amborella trichopoda HOM05D000169 ORTHO05D004437 8.2e-16 87.8 63 68.3
AUR62015970 Chenopodium quinoa HOM05D000169 ORTHO05D004437 8.2e-16 87.8 61 67.2
Zm00001eb365520 Zea mays HOM05D000169 ORTHO05D004437 8.2e-16 87.8 60 70.0
Ah.07g207080 Amaranthus hybridus HOM05D000169 ORTHO05D004437 1.1e-15 87.4 61 65.6
Gohir.D08G199900 Gossypium hirsutum HOM05D000169 ORTHO05D004437 1.1e-15 87.4 61 72.1
EL10Ac3g05630 Beta vulgaris HOM05D000169 ORTHO05D004437 1.4e-15 87.0 61 65.6
Atru.chr1.447 Acer truncatum HOM05D000169 ORTHO05D004437 1.8e-15 86.7 61 67.2
Haze_13690 Corylus avellana HOM05D000169 ORTHO05D004437 1.8e-15 86.7 61 70.5
Phvul.007G127900 Phaseolus vulgaris HOM05D001902 ORTHO05D307592 1.8e-15 86.7 48 93.8
Nitab4.5_0000080g0080 Nicotiana tabacum HOM05D000169 ORTHO05D004437 2.4e-15 86.3 57 70.2
Os04g0683700 Oryza sativa ssp. japonica HOM05D000169 ORTHO05D004437 2.4e-15 86.3 60 66.7
Thecc.03G177800 Theobroma cacao HOM05D000169 ORTHO05D004437 2.4e-15 86.3 61 62.3
ClCG01G004420 Citrullus lanatus HOM05D000169 ORTHO05D004437 4.1e-15 85.5 60 66.7
THA.LOC104808461 Tarenaya hassleriana HOM05D000169 ORTHO05D004437 4.1e-15 85.5 61 65.6
Gorai.004G210700 Gossypium raimondii HOM05D000169 ORTHO05D004437 5.3e-15 85.1 61 70.5
PGR042G3134 Punica granatum HOM05D000169 ORTHO05D004437 5.3e-15 85.1 61 63.9
AL5G28500 Arabidopsis lyrata HOM05D000169 ORTHO05D004437 6.9e-15 84.7 60 63.3
Aa31LG4G17490 Aethionema arabicum HOM05D000169 ORTHO05D004437 1.5e-14 83.6 60 63.3
AT3G48990 Arabidopsis thaliana HOM05D000169 ORTHO05D004437 1.5e-14 83.6 60 61.7
BcaB01g00762 Brassica carinata HOM05D000169 ORTHO05D004437 1.5e-14 83.6 60 61.7
BcaC07g39375 Brassica carinata HOM05D000169 ORTHO05D004437 1.5e-14 83.6 60 61.7
A06p18760 Brassica napus HOM05D000169 ORTHO05D004437 1.5e-14 83.6 60 61.7
C08p23960 Brassica napus HOM05D000169 ORTHO05D004437 1.5e-14 83.6 60 61.7
BolC8t50020H Brassica oleracea HOM05D000169 ORTHO05D004437 1.5e-14 83.6 60 61.7
BraA06t24957Z Brassica rapa HOM05D000169 ORTHO05D004437 1.5e-14 83.6 60 61.7
Carub.0005s1516 Capsella rubella HOM05D000169 ORTHO05D004437 1.5e-14 83.6 60 61.7
Thhalv10010297m.g Eutrema salsugineum HOM05D000169 ORTHO05D004437 1.5e-14 83.6 60 61.7
Sp5g13060 Schrenkiella parvula HOM05D000169 ORTHO05D004437 1.5e-14 83.6 60 61.7
CARHR157800 Cardamine hirsuta HOM05D000356 ORTHO05D004437 2.0e-14 83.2 60 61.7
VMungo0720G1771 Vigna mungo HOM05D001902 ORTHO05D001973 2.6e-14 82.8 47 91.5
Glyma.10G012600 Glycine max HOM05D001902 ORTHO05D001973 3.4e-14 82.4 47 89.4
HPP92_025726 Vanilla planifolia HOM05D000169 ORTHO05D004437 3.4e-14 82.4 67 55.2
Glyma.02G012100 Glycine max HOM05D001902 ORTHO05D001973 2.9e-13 79.3 47 85.1
SHI07112 Sapria himalayana HOM05D000169 ORTHO05D004437 3.8e-13 79.0 75 54.7
SEGI_19305 Sequoiadendron giganteum HOM05D000169 ORTHO05D004437 1.1e-12 77.4 59 55.9
SEGI_29686 Sequoiadendron giganteum HOM05D000169 ORTHO05D004437 1.1e-12 77.4 59 55.9
SEGI_38524 Sequoiadendron giganteum HOM05D000169 ORTHO05D004437 1.1e-12 77.4 59 55.9
HPP92_020856 Vanilla planifolia HOM05D000169 ORTHO05D004437 1.9e-12 76.6 59 59.3
Nitab4.5_0001951g0090 Nicotiana tabacum HOM05D000169 ORTHO05D004437 4.2e-12 75.5 51 66.7
SEGI_37772 Sequoiadendron giganteum HOM05D000169 ORTHO05D004437 4.2e-12 75.5 59 54.2
AagrBONN_evm.TU.Sc2ySwM_369.580 Anthoceros agrestis HOM05D003738 ORTHO05D005143 1.8e-10 70.1 60 51.7
Mapoly0099s0049 Marchantia polymorpha HOM05D003738 ORTHO05D005143 2.3e-10 69.7 61 49.2
SMO118G0296 Selaginella moellendorffii HOM05D000169 ORTHO05D004437 1.1e-09 67.4 60 46.7
Pp3c24_4490 Physcomitrium patens HOM05D000169 ORTHO05D004437 9.7e-09 64.3 60 43.3
arahy.Tifrunner.gnm1.ann1.46RN8V Arachis hypogaea HOM05D001902 ORTHO05D001973 1.3e-08 63.9 79 53.2
arahy.Tifrunner.gnm1.ann1.W9B7XJ Arachis hypogaea HOM05D001902 ORTHO05D001973 1.3e-08 63.9 79 53.2
Potri.014G120100 Populus trichocarpa HOM05D001902 ORTHO05D001973 2.2e-08 63.2 47 68.1
Lalb_Chr06g0166891 Lupinus albus HOM05D001902 ORTHO05D001973 1.1e-07 60.8 51 68.6
arahy.Tifrunner.gnm1.ann1.K909MU Arachis hypogaea HOM05D001902 ORTHO05D001973 1.8e-07 60.1 47 61.7
CBR_g39225 Chara braunii HOM05D000169 ORTHO05D004437 1.8e-07 60.1 59 45.8
Ciclev10018849m.g Citrus clementina HOM05D001902 ORTHO05D001973 2.4e-07 59.7 47 59.6
arahy.Tifrunner.gnm1.ann1.B4Q1Z0 Arachis hypogaea HOM05D001902 ORTHO05D001973 4.1e-07 58.9 47 61.7
Potri.002G195700 Populus trichocarpa HOM05D001902 ORTHO05D001973 2.0e-06 56.6 46 60.9
Lj5g0020955 Lotus japonicus HOM05D001902 ORTHO05D001973 3.5e-06 55.8 51 68.6
Manes.01G228300 Manihot esculenta HOM05D001902 ORTHO05D001973 3.5e-06 55.8 47 61.7
Prupe.8G266200 Prunus persica HOM05D001902 ORTHO05D001973 4.5e-06 55.5 47 61.7
TWI18G0805 Tripterygium wilfordii HOM05D001902 ORTHO05D001973 4.5e-06 55.5 47 59.6
TWI36G1529 Tripterygium wilfordii HOM05D001902 ORTHO05D001973 4.5e-06 55.5 78 43.6
Cc01_g21480 Coffea canephora HOM05D001902 ORTHO05D001973 7.7e-06 54.7 50 62.0
Sopen02g026000 Solanum pennellii HOM05D000356 ORTHO05D000265 7.7e-06 54.7 61 47.5


User provided reference genes

Program Settings