Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 7.2e-73 277.7 207 100.0
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 6.3e-69 264.6 206 96.6
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 1.8e-63 246.5 207 93.2
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 1.3e-61 240.4 207 74.4
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 2.2e-61 239.6 207 70.5
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 3.1e-60 235.7 207 76.8
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 5.3e-60 235.0 207 76.8
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 2.9e-58 229.2 207 74.9
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 9.4e-57 224.2 235 67.7
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 4.0e-55 218.8 235 74.0
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 4.0e-55 218.8 235 74.0
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 4.4e-54 215.3 218 69.7
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 1.3e-53 213.8 126 88.9
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 1.3e-53 213.8 208 73.6
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 2.2e-53 213.0 214 71.5
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.1e-52 210.7 127 87.4
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 1.4e-52 210.3 216 72.7
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 9.1e-52 207.6 126 86.5
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 9.1e-52 207.6 213 62.0
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.6e-51 206.8 214 62.1
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.6e-51 206.8 222 69.4
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.6e-51 206.8 222 69.4
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 1.6e-51 206.8 210 66.7
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 2.7e-51 206.1 210 62.9
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 3.5e-51 205.7 222 61.3
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 3.5e-51 205.7 127 84.3
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 4.5e-51 205.3 127 85.0
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 5.9e-51 204.9 215 62.3
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 5.9e-51 204.9 224 78.1
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 7.7e-51 204.5 223 70.0
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 7.7e-51 204.5 215 65.6
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 1.0e-50 204.1 207 64.7
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.0e-50 204.1 216 62.5
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 1.0e-50 204.1 127 83.5
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.0e-50 204.1 127 83.5
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 1.0e-50 204.1 209 67.0
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 1.0e-50 204.1 210 66.7
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.3e-50 203.8 126 83.3
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.7e-50 203.4 226 58.0
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 1.7e-50 203.4 211 61.6
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 1.7e-50 203.4 212 82.1
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 2.3e-50 203.0 122 86.1
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 2.9e-50 202.6 215 63.7
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 2.9e-50 202.6 213 81.2
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 2.9e-50 202.6 215 60.0
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 3.8e-50 202.2 216 61.1
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 3.8e-50 202.2 205 71.7
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 6.5e-50 201.4 212 63.2
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 1.5e-49 200.3 213 62.0
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 1.5e-49 200.3 210 60.5
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 2.5e-49 199.5 125 81.6
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 3.3e-49 199.1 210 60.0
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 7.2e-49 198.0 211 57.8
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.6e-48 196.8 223 65.5
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 2.1e-48 196.4 220 66.4
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 2.1e-48 196.4 217 69.6
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 2.8e-48 196.1 211 75.8
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 3.6e-48 195.7 211 69.7
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 3.6e-48 195.7 211 69.7
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 4.7e-48 195.3 211 58.3
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 4.7e-48 195.3 231 62.8
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 4.7e-48 195.3 212 60.4
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 8.0e-48 194.5 210 61.0
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 2.3e-47 193.0 210 59.0
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.3e-47 193.0 229 52.8
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 2.3e-47 193.0 212 59.0
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 3.0e-47 192.6 127 78.7
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 3.0e-47 192.6 126 81.0
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.0e-47 192.2 210 56.7
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 5.2e-47 191.8 210 58.6
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 5.2e-47 191.8 229 55.5
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 5.2e-47 191.8 229 55.5
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 6.8e-47 191.4 220 61.8
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 6.8e-47 191.4 216 59.7
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 6.8e-47 191.4 126 80.2
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 6.8e-47 191.4 127 76.4
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 8.9e-47 191.0 211 66.8
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 1.2e-46 190.7 209 58.4
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.5e-46 190.3 212 58.0
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 2.0e-46 189.9 126 78.6
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 2.0e-46 189.9 210 57.1
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 3.4e-46 189.1 126 74.6
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 7.5e-46 188.0 127 78.0
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 9.8e-46 187.6 229 56.8
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 1.7e-45 186.8 245 65.3
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 1.7e-45 186.8 226 59.3
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.2e-45 186.4 229 55.0
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 4.9e-45 185.3 212 54.2
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 1.1e-44 184.1 120 80.0
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 1.1e-44 184.1 124 75.0
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 1.8e-44 183.3 127 72.4
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 1.8e-44 183.3 127 73.2
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 2.4e-44 183.0 126 73.8
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 3.1e-44 182.6 127 73.2
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 3.1e-44 182.6 127 73.2
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 4.1e-44 182.2 124 77.4
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 4.1e-44 182.2 189 71.4
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 7.0e-44 181.4 127 71.7
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 7.0e-44 181.4 233 51.9
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 1.2e-43 180.6 200 58.5
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 1.6e-43 180.3 126 73.0
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 2.0e-43 179.9 210 54.8
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 4.5e-43 178.7 127 70.9
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 1.0e-42 177.6 125 70.4
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 1.0e-42 177.6 125 70.4
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 1.3e-42 177.2 125 69.6
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 2.3e-42 176.4 209 57.4
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 2.9e-42 176.0 125 69.6
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 6.6e-42 174.9 130 73.1
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 1.9e-41 173.3 212 55.2
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 1.2e-40 170.6 192 55.7
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 4.7e-40 168.7 106 82.1
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 1.8e-39 166.8 202 51.5
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 5.4e-36 155.2 125 64.8
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.2e-35 154.1 125 65.6
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 6.0e-35 151.8 217 47.5
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 7.8e-35 151.4 208 47.6
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 1.7e-34 150.2 164 64.0
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 2.3e-34 149.8 125 59.2
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 3.0e-34 149.4 94 78.7
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 5.0e-34 148.7 98 79.6
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.1e-33 147.5 194 69.1
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 1.9e-33 146.7 207 47.8
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 3.3e-33 146.0 101 75.2
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 3.3e-33 146.0 127 65.4
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 5.6e-33 145.2 109 73.4
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 1.2e-32 144.1 207 48.8
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 2.1e-32 143.3 126 60.3
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 1.1e-31 141.0 127 60.6
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 1.1e-31 141.0 214 43.5
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 1.1e-31 141.0 214 43.5
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 4.0e-31 139.0 108 65.7
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 2.6e-30 136.3 131 58.0
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 2.2e-29 133.3 191 52.4
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 3.7e-29 132.5 133 54.9
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 3.7e-29 132.5 219 39.7
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 6.4e-29 131.7 129 57.4
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 1.9e-28 130.2 170 52.9
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 5.4e-28 128.6 84 78.6
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 1.6e-27 127.1 127 58.3
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 3.5e-27 125.9 128 54.7
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.6e-27 125.6 168 54.2
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 9.5e-25 117.9 103 58.3
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.2e-22 110.9 82 73.2
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 1.7e-21 107.1 219 43.8
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.5e-17 94.0 79 64.6
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 2.8e-16 89.7 147 49.7
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 3.1e-15 86.3 87 50.6
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 8.9e-15 84.7 138 50.0
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 3.4e-14 82.8 48 83.3
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 1.9e-12 77.0 65 60.0
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.4e-12 76.6 135 46.7
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 5.4e-12 75.5 41 82.9
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 2.7e-11 73.2 88 43.2
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 3.5e-11 72.8 37 89.2
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 3.1e-07 59.7 94 40.4
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 4.0e-07 59.3 51 60.8
arahy.Tifrunner.gnm1.ann1.W2JFNW Arachis hypogaea HOM05D004341 ORTHO05D005075 5.3e-07 58.9 34 79.4
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 5.3e-07 58.9 98 31.6
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 1.2e-06 57.8 46 63.0


User provided reference genes

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