Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 1.5e-267 925.6 466 100.0
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 3.2e-254 881.3 466 94.2
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 4.8e-250 867.5 466 93.6
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 4.7e-229 797.7 472 84.5
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 1.8e-228 795.8 469 85.9
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 3.0e-228 795.0 468 84.4
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 8.8e-228 793.5 473 83.9
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 1.3e-226 789.6 466 84.1
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 1.7e-226 789.3 466 83.9
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 4.8e-226 787.7 468 83.8
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 4.0e-212 741.5 470 77.4
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 4.8e-210 734.6 469 77.0
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 8.3e-210 733.8 469 77.0
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 1.4e-209 733.0 469 76.3
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 1.8e-209 732.6 470 76.8
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 1.8e-209 732.6 468 75.6
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 2.4e-209 732.3 474 76.2
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 7.0e-209 730.7 469 76.5
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 7.0e-209 730.7 470 76.8
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 9.1e-209 730.3 468 75.6
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 9.1e-209 730.3 469 75.9
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.2e-208 729.9 468 75.6
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 1.6e-208 729.6 469 75.5
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 2.7e-208 728.8 469 76.3
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 5.9e-208 727.6 469 76.3
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 1.0e-207 726.9 468 75.4
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 2.2e-207 725.7 470 76.2
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 2.2e-207 725.7 468 76.5
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 2.9e-207 725.3 469 77.0
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 5.0e-207 724.5 468 75.6
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 5.0e-207 724.5 469 75.9
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 1.1e-206 723.4 471 75.2
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 1.1e-206 723.4 468 75.4
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 1.5e-206 723.0 472 75.4
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 1.9e-206 722.6 469 74.8
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 2.5e-206 722.2 469 76.1
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 2.5e-206 722.2 468 75.9
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 2.5e-206 722.2 470 76.2
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 3.2e-206 721.8 469 75.1
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 5.5e-206 721.1 469 75.5
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 1.2e-205 719.9 470 74.9
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 1.6e-205 719.5 469 75.3
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 2.1e-205 719.2 470 75.1
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 2.1e-205 719.2 493 74.0
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 4.7e-205 718.0 470 74.9
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 6.1e-205 717.6 467 76.7
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 8.0e-205 717.2 470 74.7
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 8.0e-205 717.2 468 75.2
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 4.0e-204 714.9 468 75.6
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 6.8e-204 714.1 463 75.6
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 2.0e-203 712.6 467 75.4
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 2.6e-203 712.2 472 73.9
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 2.6e-203 712.2 469 74.6
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 2.6e-203 712.2 468 74.8
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 3.4e-203 711.8 472 74.8
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 4.4e-203 711.4 473 74.0
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 5.7e-203 711.1 469 74.8
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 9.8e-203 710.3 471 74.5
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 1.7e-202 709.5 469 74.0
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 1.7e-202 709.5 470 74.0
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 1.7e-202 709.5 472 73.5
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 1.7e-202 709.5 472 73.5
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 2.8e-202 708.8 470 73.6
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 3.7e-202 708.4 510 69.4
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 3.7e-202 708.4 510 69.6
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 3.7e-202 708.4 510 69.2
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 4.8e-202 708.0 449 77.1
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 4.8e-202 708.0 510 69.0
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 6.3e-202 707.6 469 74.4
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 1.1e-201 706.8 470 73.8
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 1.8e-201 706.1 469 73.8
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 1.8e-201 706.1 468 74.1
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 2.4e-201 705.7 469 73.8
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 2.4e-201 705.7 469 73.8
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 2.4e-201 705.7 468 74.1
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 3.1e-201 705.3 468 73.9
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 3.1e-201 705.3 469 74.0
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 4.1e-201 704.9 470 73.8
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 5.4e-201 704.5 472 73.1
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 9.1e-201 703.7 465 74.2
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 1.2e-200 703.4 498 71.5
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 1.6e-200 703.0 469 74.4
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 2.0e-200 702.6 470 72.8
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 2.7e-200 702.2 470 73.2
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 2.7e-200 702.2 472 73.9
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 2.7e-200 702.2 472 73.9
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 2.7e-200 702.2 468 74.1
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 2.7e-200 702.2 468 73.9
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 5.9e-200 701.0 445 75.7
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 7.7e-200 700.7 468 73.9
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 7.7e-200 700.7 468 73.3
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 1.0e-199 700.3 472 73.1
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 1.0e-199 700.3 473 73.2
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 1.3e-199 699.9 465 73.5
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 1.3e-199 699.9 453 75.7
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 1.7e-199 699.5 470 73.8
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 1.7e-199 699.5 469 72.3
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 2.3e-199 699.1 512 68.8
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 2.3e-199 699.1 465 73.8
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 2.9e-199 698.7 472 73.5
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 3.8e-199 698.4 470 72.6
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 3.8e-199 698.4 470 72.1
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 5.0e-199 698.0 472 74.2
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 1.1e-198 696.8 460 74.6
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 1.9e-198 696.0 465 73.1
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 2.5e-198 695.7 471 73.2
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 3.3e-198 695.3 472 73.7
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 4.2e-198 694.9 471 71.8
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 4.2e-198 694.9 462 73.8
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 5.5e-198 694.5 472 72.7
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 1.2e-197 693.3 469 73.1
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 2.1e-197 692.6 468 72.6
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 6.1e-197 691.0 468 73.7
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 1.8e-196 689.5 468 72.0
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 4.0e-196 688.3 468 72.0
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 4.0e-196 688.3 421 77.7
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 2.6e-195 685.6 463 72.8
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 4.4e-195 684.9 485 70.3
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 7.5e-195 684.1 438 75.6
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 7.5e-195 684.1 466 72.3
ECA232G0993 Erigeron canadensis HOM05D003618 ORTHO05D004302 1.3e-194 683.3 469 72.7
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 2.2e-194 682.6 447 74.9
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 2.8e-194 682.2 447 74.0
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 3.7e-194 681.8 469 71.6
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 3.7e-194 681.8 469 71.6
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 3.7e-194 681.8 469 71.6
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 2.4e-193 679.1 470 72.1
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 3.2e-193 678.7 466 73.4
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 9.2e-193 677.2 462 71.9
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.6e-192 676.4 468 72.2
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 2.7e-192 675.6 423 78.5
SEGI_37686 Sequoiadendron giganteum HOM05D003618 ORTHO05D004302 2.1e-189 666.0 426 75.1
Hund09436 Selenicereus undatus HOM05D003618 ORTHO05D004302 8.0e-189 664.1 468 69.0
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 6.8e-188 661.0 451 71.2
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 1.4e-185 653.3 489 68.3
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 3.5e-184 648.7 468 70.3
Mapoly0064s0074 Marchantia polymorpha HOM05D003618 ORTHO05D004302 2.9e-178 629.0 417 72.9
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 6.4e-178 627.9 377 79.6
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 1.4e-177 626.7 378 79.1
Pp3c24_8730 Physcomitrium patens HOM05D003618 ORTHO05D004302 1.9e-177 626.3 412 74.3
Mapoly0034s0078 Marchantia polymorpha HOM05D003618 ORTHO05D004302 7.1e-177 624.4 428 70.6
Pp3c8_12290 Physcomitrium patens HOM05D003618 ORTHO05D004302 1.6e-176 623.2 412 73.5
SMO348G0015 Selaginella moellendorffii HOM05D003618 ORTHO05D004302 6.6e-175 617.8 418 69.9
HanXRQChr16g0517311 Helianthus annuus HOM05D003618 ORTHO05D004302 8.1e-173 610.9 473 64.9
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 5.8e-171 604.7 430 70.5
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 1.3e-167 593.6 468 66.2
CBR_g11924 Chara braunii HOM05D003618 ORTHO05D004302 5.2e-164 581.6 426 66.7
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 2.6e-163 579.3 404 70.0
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 3.2e-161 572.4 373 75.9
Cre12.g546050 Chlamydomonas reinhardtii HOM05D003618 ORTHO05D004302 3.8e-154 548.9 407 63.6
Aa31sc1732G10 Aethionema arabicum HOM05D003618 ORTHO05D004302 9.3e-153 544.3 329 79.3
CAN.G781.11 Capsicum annuum HOM05D003618 ORTHO05D004302 2.7e-152 542.7 322 81.1
HanXRQChr05g0156211 Helianthus annuus HOM05D003618 ORTHO05D004302 1.5e-150 537.0 331 78.2
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 2.9e-146 522.7 480 59.8
PRCOL_00002139 Prasinoderma coloniale HOM05D003618 ORTHO05D004302 2.5e-137 493.0 416 58.2
Psat4g204400 Pisum sativum HOM05D003618 ORTHO05D004302 4.3e-134 482.3 293 84.0
Cc00_g09910 Coffea canephora HOM05D003618 ORTHO05D004302 2.6e-123 446.4 295 73.2
MCO15G646 Micromonas commoda HOM05D003618 ORTHO05D004302 7.9e-120 434.9 354 59.6
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 2.5e-118 429.9 278 74.5
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 1.2e-115 421.0 294 69.7
Actinidia33067 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.9e-97 360.5 259 71.8
Gohir.D11G000766 Gossypium hirsutum HOM05D003618 ORTHO05D004302 2.3e-87 327.0 189 82.0
Zm00001eb334380 Zea mays HOM05D003618 ORTHO05D004302 8.8e-87 325.1 190 81.1
Sc12g0005330 Simmondsia chinensis HOM05D003618 ORTHO05D004302 6.8e-79 298.9 179 76.5
FvH4_4g01210 Fragaria vesca HOM05D003618 ORTHO05D004302 9.8e-78 295.0 250 62.8
Zm00001eb334370 Zea mays HOM05D003618 ORTHO05D004302 1.8e-76 290.8 200 73.5
Gohir.D11G000832 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.6e-72 277.7 225 65.8
Cc04_g14070 Coffea canephora HOM05D003618 ORTHO05D004302 7.5e-62 242.3 223 59.2
Lsat_1_v5_gn_0_46101 Lactuca sativa HOM05D003618 ORTHO05D004302 6.0e-59 232.6 363 36.9
Hund09437 Selenicereus undatus HOM05D003618 ORTHO05D004302 1.3e-58 231.5 409 39.4
FvH4_3g27741 Fragaria vesca HOM05D003618 ORTHO05D004302 1.6e-56 224.6 136 80.9
VMungo0647G0692 Vigna mungo HOM05D003618 ORTHO05D004302 4.7e-56 223.0 158 70.3
FvH4_1g09716 Fragaria vesca HOM05D003618 ORTHO05D004302 4.4e-46 189.9 155 65.2
FvH4_1g09717 Fragaria vesca HOM05D003618 ORTHO05D004302 2.4e-28 131.0 71 84.5
FAN09G3822 Fragaria x ananassa HOM05D003618 ORTHO05D004302 3.7e-24 117.1 118 55.9
DCAR_016639 Daucus carota HOM05D003618 ORTHO05D003669 1.4e-23 115.2 75 74.7
RcHm_v2.0_Chr2g0151191 Rosa chinensis HOM05D001812 ORTHO05D004302 1.1e-20 105.5 73 71.2
RcHm_v2.0_Chr1g0360281 Rosa chinensis HOM05D003618 ORTHO05D004302 6.0e-19 99.8 72 66.7
Hma1.2p1_0549F.1_g176800 Hydrangea macrophylla HOM05D003618 ORTHO05D004302 1.4e-12 78.6 57 71.9
CSS0007150 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 6.1e-11 73.2 57 66.7
CSS0047950 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 6.1e-11 73.2 57 66.7
Cc00_g21160 Coffea canephora HOM05D003618 ORTHO05D153345 5.1e-10 70.1 37 73.0
SGA_v2.0_scaffold45G17201 Striga asiatica HOM05D003618 ORTHO05D404764 3.3e-09 67.4 147 38.8
Cc00_g09880 Coffea canephora HOM05D003618 ORTHO05D004302 7.4e-09 66.2 37 70.3
CSS0042990 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 2.4e-07 61.2 50 68.0
CSS0042870 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 2.0e-06 58.2 48 66.7


User provided reference genes

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