Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G020000 Phaseolus vulgaris HOM05D003415 ORTHO05D001594 3.0e-142 508.4 250 100.0
VMungo0331G0848 Vigna mungo HOM05D003415 ORTHO05D001594 9.5e-96 354.0 237 78.9
Glyma.16G094900 Glycine max HOM05D003415 ORTHO05D001594 3.0e-81 305.8 179 84.4
Lj3g0005113 Lotus japonicus HOM05D003415 ORTHO05D001594 4.0e-70 268.9 208 68.8
Ca_26921_v3 Cicer arietinum L. HOM05D003415 ORTHO05D001594 6.7e-65 251.5 235 61.7
TPR.G17145 Trifolium pratense HOM05D003415 ORTHO05D001594 4.3e-64 248.8 200 65.5
Medtr8g013095 Medicago truncatula HOM05D003415 ORTHO05D001594 4.9e-60 235.3 192 65.1
Lalb_Chr12g0209961 Lupinus albus HOM05D003415 ORTHO05D001594 2.1e-58 229.9 210 63.3
Psat0s4384g0080 Pisum sativum HOM05D003415 ORTHO05D001594 2.1e-58 229.9 204 61.8
arahy.Tifrunner.gnm1.ann1.FUXK5I Arachis hypogaea HOM05D003415 ORTHO05D001594 2.7e-58 229.6 212 59.0
arahy.Tifrunner.gnm1.ann1.NLS2AK Arachis hypogaea HOM05D003415 ORTHO05D001594 4.6e-58 228.8 212 59.0
arahy.Tifrunner.gnm1.ann1.NIIH12 Arachis hypogaea HOM05D003415 ORTHO05D001594 8.2e-55 218.0 232 54.3
Lalb_Chr07g0194281 Lupinus albus HOM05D003415 ORTHO05D001594 1.5e-53 213.8 194 62.9
Glyma.08G351100 Glycine max HOM05D003415 ORTHO05D001594 3.8e-52 209.1 195 56.9
arahy.Tifrunner.gnm1.ann1.M88YV2 Arachis hypogaea HOM05D003415 ORTHO05D001594 2.5e-51 206.5 244 50.4
VMungo1383G3594 Vigna mungo HOM05D003415 ORTHO05D001594 1.2e-50 204.1 182 58.8
Prupe.8G201300 Prunus persica HOM05D003415 ORTHO05D001594 4.6e-50 202.2 202 57.9
QL05p058688 Quercus lobata HOM05D003415 ORTHO05D001594 2.3e-49 199.9 195 58.5
QL09p053183 Quercus lobata HOM05D003415 ORTHO05D001594 3.9e-49 199.1 195 57.9
Glyma.18G164900 Glycine max HOM05D003415 ORTHO05D001594 5.1e-49 198.7 247 49.4
Ca_17420_v3 Cicer arietinum L. HOM05D003415 ORTHO05D001594 6.7e-49 198.4 198 55.1
Phvul.008G128100 Phaseolus vulgaris HOM05D003415 ORTHO05D001594 5.7e-48 195.3 191 55.0
CiPaw.04G104600 Carya illinoinensis HOM05D003415 ORTHO05D001594 3.1e-46 189.5 194 57.2
Medtr7g056400 Medicago truncatula HOM05D003415 ORTHO05D001594 3.1e-46 189.5 235 49.8
Hma1.2p1_0226F.1_g095560 Hydrangea macrophylla HOM05D003415 ORTHO05D001594 1.5e-45 187.2 202 54.0
Psat3g147480 Pisum sativum HOM05D003415 ORTHO05D001594 4.5e-45 185.7 235 47.7
MD10G1161800 Malus domestica HOM05D003415 ORTHO05D001594 1.1e-43 181.0 192 52.1
Manes.12G046200 Manihot esculenta HOM05D003415 ORTHO05D001594 4.2e-43 179.1 193 52.8
RcHm_v2.0_Chr6g0284531 Rosa chinensis HOM05D003415 ORTHO05D001594 1.6e-42 177.2 207 51.7
TPR.G14528 Trifolium pratense HOM05D003415 ORTHO05D001594 4.6e-42 175.6 209 47.4
Lalb_Chr19g0125701 Lupinus albus HOM05D003415 ORTHO05D001594 6.1e-42 175.3 210 50.5
Lj1g0007221 Lotus japonicus HOM05D003415 ORTHO05D001594 1.0e-41 174.5 192 52.6
MD05G1173900 Malus domestica HOM05D003415 ORTHO05D001594 1.4e-41 174.1 178 52.8
Glyma.03G064200 Glycine max HOM05D003415 ORTHO05D001594 1.8e-41 173.7 107 83.2
FAN24G0460 Fragaria x ananassa HOM05D003415 ORTHO05D001594 3.0e-41 172.9 209 50.7
FAN27G2123 Fragaria x ananassa HOM05D003415 ORTHO05D001594 3.0e-41 172.9 212 50.0
Manes.13G046900 Manihot esculenta HOM05D003415 ORTHO05D001594 3.0e-41 172.9 193 51.8
Thecc.01G224000 Theobroma cacao HOM05D003415 ORTHO05D001594 3.0e-41 172.9 193 50.8
Ciclev10021149m.g Citrus clementina HOM05D003415 ORTHO05D001594 6.7e-41 171.8 194 50.0
FvH4_2g18790 Fragaria vesca HOM05D003415 ORTHO05D001594 6.7e-41 171.8 212 50.0
Duzib211G0076 Durio zibethinus HOM05D003415 ORTHO05D001594 1.1e-40 171.0 193 50.8
Manes.13G046800 Manihot esculenta HOM05D003415 ORTHO05D001594 2.0e-40 170.2 181 53.0
Atru.chr9.2214 Acer truncatum HOM05D003415 ORTHO05D001594 2.6e-40 169.9 202 47.5
FAN15G3328 Fragaria x ananassa HOM05D003415 ORTHO05D001594 1.7e-39 167.2 203 49.8
CiPaw.03G148100 Carya illinoinensis HOM05D003415 ORTHO05D001594 2.8e-39 166.4 188 53.7
Duzib133G1316 Durio zibethinus HOM05D003415 ORTHO05D001594 4.8e-39 165.6 193 47.7
Psat3g016080 Pisum sativum HOM05D000017 ORTHO05D000013 6.3e-39 165.2 192 49.5
Potri.002G244000 Populus trichocarpa HOM05D003415 ORTHO05D001594 8.2e-39 164.9 194 50.0
Sabra02G0185700 Salix brachista HOM05D003415 ORTHO05D001594 4.1e-38 162.5 205 48.8
Duzib138G0574 Durio zibethinus HOM05D003415 ORTHO05D001594 5.3e-38 162.2 193 48.7
CSS0028538 Camellia sinensis var. sinensis HOM05D003415 ORTHO05D001594 3.4e-37 159.5 202 47.0
Dinv19191 Davidia involucrata HOM05D003415 ORTHO05D001594 2.2e-36 156.8 202 46.5
TWI75G1556 Tripterygium wilfordii HOM05D003415 ORTHO05D001594 2.9e-36 156.4 191 45.5
Gohir.A07G200600 Gossypium hirsutum HOM05D003415 ORTHO05D001594 9.4e-35 151.4 193 47.7
Gohir.D07G206900 Gossypium hirsutum HOM05D003415 ORTHO05D001594 9.4e-35 151.4 193 47.7
Gorai.001G233300 Gossypium raimondii HOM05D003415 ORTHO05D001594 9.4e-35 151.4 193 47.7
Ciclev10028898m.g Citrus clementina HOM05D003415 ORTHO05D001594 1.2e-34 151.0 235 41.7
TAR636G3032 Trochodendron aralioides HOM05D003415 ORTHO05D001594 1.2e-34 151.0 191 47.6
Nn1g07918 Nelumbo nucifera HOM05D003415 ORTHO05D001594 2.7e-34 149.8 181 46.4
PGR083G1672 Punica granatum HOM05D003415 ORTHO05D001594 4.7e-34 149.1 194 47.9
Haze_24816 Corylus avellana HOM05D003415 ORTHO05D001594 1.4e-33 147.5 191 46.6
Actinidia30068 Actinidia chinensis HOM05D003415 ORTHO05D001594 2.3e-33 146.7 215 43.3
Gorai.001G187500 Gossypium raimondii HOM05D003415 ORTHO05D001594 2.3e-33 146.7 193 47.2
Cpa.g.sc8.139 Carica papaya HOM05D003415 ORTHO05D001594 3.0e-33 146.4 164 54.3
Gohir.A08G195150 Gossypium hirsutum HOM05D003415 ORTHO05D001594 3.9e-33 146.0 194 43.8
Gorai.004G226300 Gossypium raimondii HOM05D003415 ORTHO05D001594 5.2e-33 145.6 193 43.5
Gohir.D07G163800 Gossypium hirsutum HOM05D003415 ORTHO05D001594 8.8e-33 144.8 193 46.6
Cc03_g04120 Coffea canephora HOM05D003415 ORTHO05D001594 2.0e-32 143.7 201 43.3
Actinidia23718 Actinidia chinensis HOM05D003415 ORTHO05D001594 4.4e-32 142.5 191 46.1
Atru.chr1.3187 Acer truncatum HOM05D003415 ORTHO05D001594 9.7e-32 141.4 165 48.5
CANSAT01G2234 Cannabis sativa HOM05D003415 ORTHO05D001594 1.3e-31 141.0 192 43.8
MSTRG.24730 Avicennia marina HOM05D003415 ORTHO05D001594 1.7e-31 140.6 189 45.0
CsaV3_3G029960 Cucumis sativus L. HOM05D003415 ORTHO05D001594 1.7e-31 140.6 191 46.6
Gohir.D08G212628 Gossypium hirsutum HOM05D003415 ORTHO05D001594 2.2e-31 140.2 193 42.5
MELO3C024046.2 Cucumis melo HOM05D003415 ORTHO05D001594 2.8e-31 139.8 193 47.7
Lj2A1128G42 Lonicera japonica HOM05D003415 ORTHO05D001594 4.8e-31 139.0 161 48.4
CSS0043801 Camellia sinensis var. sinensis HOM05D003415 ORTHO05D001594 6.3e-31 138.7 193 45.1
Actinidia09476 Actinidia chinensis HOM05D003415 ORTHO05D001594 1.1e-30 137.9 191 44.5
Gohir.A07G157400 Gossypium hirsutum HOM05D003415 ORTHO05D001594 1.1e-30 137.9 193 45.6
TWI18G0281 Tripterygium wilfordii HOM05D003415 ORTHO05D001594 1.1e-30 137.9 191 41.9
Sed0000990 Sechium edule HOM05D003415 ORTHO05D001594 1.4e-30 137.5 191 45.5
ClCG07G001990 Citrullus lanatus HOM05D003415 ORTHO05D001594 1.8e-30 137.1 218 41.7
Eucgr.H00791 Eucalyptus grandis HOM05D003415 ORTHO05D001594 1.8e-30 137.1 194 47.4
Potri.014G190000 Populus trichocarpa HOM05D003415 ORTHO05D001594 1.8e-30 137.1 193 46.1
TWI60G1308 Tripterygium wilfordii HOM05D003415 ORTHO05D001594 2.4e-30 136.7 188 43.1
MSTRG.21867 Avicennia marina HOM05D003415 ORTHO05D001594 9.1e-30 134.8 188 44.1
SGA_v2.0_scaffold165G38284 Striga asiatica HOM05D003415 ORTHO05D001594 1.2e-29 134.4 190 41.1
Rhsim01G0255100 Rhododendron simsii HOM05D003415 ORTHO05D001594 2.6e-29 133.3 192 44.3
MSTRG.9963 Avicennia marina HOM05D003415 ORTHO05D001594 7.7e-29 131.7 191 42.4
TWI81G0623 Tripterygium wilfordii HOM05D003415 ORTHO05D001594 7.7e-29 131.7 158 47.5
MBI07_g28644_MAGBIO Magnolia biondii HOM05D003415 ORTHO05D001594 1.3e-28 131.0 206 42.2
Nitab4.5_0002406g0020 Nicotiana tabacum HOM05D003415 ORTHO05D001594 2.2e-28 130.2 178 42.7
vmacro14746 Vaccinium macrocarpon HOM05D003415 ORTHO05D001594 3.8e-28 129.4 194 43.3
Psat6g137760 Pisum sativum HOM05D003415 ORTHO05D001594 5.0e-28 129.0 192 42.2
Aqoxy5G00010 Aquilegia oxysepala HOM05D003415 ORTHO05D001594 6.5e-28 128.6 193 42.0
Nitab4.5_0000085g0290 Nicotiana tabacum HOM05D003415 ORTHO05D001594 1.1e-27 127.9 178 42.1
Sed0004220 Sechium edule HOM05D003415 ORTHO05D001594 1.9e-27 127.1 191 43.5
Carub.0008s0847 Capsella rubella HOM05D003415 ORTHO05D001594 4.2e-27 125.9 224 39.3
THA.LOC104802669 Tarenaya hassleriana HOM05D003415 ORTHO05D001594 5.5e-27 125.6 223 38.6
Oeu042810.1 Olea europaea HOM05D003415 ORTHO05D001594 1.6e-26 124.0 252 37.3
SGA_v2.0_scaffold79G25582 Striga asiatica HOM05D003415 ORTHO05D001594 1.6e-26 124.0 249 34.1
Oeu042809.1 Olea europaea HOM05D003415 ORTHO05D001594 2.7e-26 123.2 251 36.7
Peaxi162Scf00520g00078 Petunia axillaris HOM05D003415 ORTHO05D001594 2.7e-26 123.2 179 43.6
Hund05564 Selenicereus undatus HOM05D003415 ORTHO05D001594 3.6e-26 122.9 191 40.3
THA.LOC104822499 Tarenaya hassleriana HOM05D003415 ORTHO05D001594 3.6e-26 122.9 228 39.5
Peaxi162Scf00517g00628 Petunia axillaris HOM05D003415 ORTHO05D001594 4.7e-26 122.5 196 40.3
AT5G48720 Arabidopsis thaliana HOM05D003415 ORTHO05D001594 6.1e-26 122.1 200 40.5
Nitab4.5_0012390g0020 Nicotiana tabacum HOM05D003415 ORTHO05D001594 6.1e-26 122.1 220 39.1
AL8G21800 Arabidopsis lyrata HOM05D003415 ORTHO05D001594 8.0e-26 121.7 200 40.5
Oeu053312.2 Olea europaea HOM05D003415 ORTHO05D001594 4.0e-25 119.4 178 43.3
SalBow3G1406 Salvia bowleyana HOM05D003415 ORTHO05D001594 4.0e-25 119.4 191 41.9
ECA248G2219 Erigeron canadensis HOM05D003415 ORTHO05D001594 5.2e-25 119.0 182 41.8
Migut.G00369 Erythranthe guttata HOM05D003415 ORTHO05D001594 8.8e-25 118.2 191 39.3
Nn3g20001 Nelumbo nucifera HOM05D003415 ORTHO05D001594 1.2e-24 117.9 181 40.3
HanXRQChr01g0015201 Helianthus annuus HOM05D003415 ORTHO05D001594 1.5e-24 117.5 194 38.7
CARHR183170 Cardamine hirsuta HOM05D003415 ORTHO05D001594 2.6e-24 116.7 226 38.5
Sp2g19130 Schrenkiella parvula HOM05D003415 ORTHO05D001594 7.5e-24 115.2 196 41.3
CAN.G1402.7 Capsicum annuum HOM05D003415 ORTHO05D001594 9.7e-24 114.8 178 39.3
HanXRQChr10g0279401 Helianthus annuus HOM05D003415 ORTHO05D001594 9.7e-24 114.8 193 40.9
Oeu058965.1 Olea europaea HOM05D003415 ORTHO05D001594 4.8e-23 112.5 188 41.5
Lsat_1_v5_gn_5_180561 Lactuca sativa HOM05D003415 ORTHO05D001594 1.1e-22 111.3 192 40.6
Psat4g164680 Pisum sativum HOM05D003584 ORTHO05D004148 1.1e-22 111.3 84 70.2
BcaC06g30764 Brassica carinata HOM05D003415 ORTHO05D001594 1.4e-22 110.9 200 41.5
Solyc09g082490.4 Solanum lycopersicum HOM05D003415 ORTHO05D001594 2.4e-22 110.2 179 40.2
Thhalv10004684m.g Eutrema salsugineum HOM05D003415 ORTHO05D001594 3.1e-22 109.8 200 40.0
Cc01_g16890 Coffea canephora HOM05D003415 ORTHO05D001594 4.1e-22 109.4 193 41.5
BolC7t44457H Brassica oleracea HOM05D003415 ORTHO05D001594 5.3e-22 109.0 193 41.5
DCAR_001774 Daucus carota HOM05D003415 ORTHO05D001594 5.3e-22 109.0 207 34.3
Sopen09g031350 Solanum pennellii HOM05D003415 ORTHO05D001594 5.3e-22 109.0 179 39.7
THA.LOC104818962 Tarenaya hassleriana HOM05D003415 ORTHO05D001594 7.0e-22 108.6 174 42.0
PGSC0003DMG400032241 Solanum tuberosum HOM05D003415 ORTHO05D001594 9.1e-22 108.2 166 41.6
PSO170G0299 Papaver somniferum HOM05D003415 ORTHO05D001594 2.0e-21 107.1 193 37.8
A09p04600 Brassica napus HOM05D003415 ORTHO05D001594 3.5e-21 106.3 200 42.0
Sopen06g034770 Solanum pennellii HOM05D003415 ORTHO05D001594 3.5e-21 106.3 196 35.2
Solyc06g083410.4 Solanum lycopersicum HOM05D003415 ORTHO05D001594 4.5e-21 105.9 196 34.7
Aa31sc37G20 Aethionema arabicum HOM05D003415 ORTHO05D001594 5.9e-21 105.5 175 42.9
DCAR_004730 Daucus carota HOM05D003415 ORTHO05D001594 1.3e-20 104.4 178 37.1
BraA06t26810Z Brassica rapa HOM05D003415 ORTHO05D001594 2.2e-20 103.6 196 39.8
BcaC04g23764 Brassica carinata HOM05D003415 ORTHO05D001594 2.9e-20 103.2 200 40.0
Sc05g0002030 Simmondsia chinensis HOM05D003415 ORTHO05D001594 2.9e-20 103.2 194 38.1
BolC9t53420H Brassica oleracea HOM05D003415 ORTHO05D001594 3.8e-20 102.8 200 40.0
MSTRG.4050 Avicennia marina HOM05D003415 ORTHO05D001594 5.0e-20 102.4 204 35.8
Nitab4.5_0001564g0080 Nicotiana tabacum HOM05D003415 ORTHO05D001594 5.0e-20 102.4 142 43.7
C09p04920 Brassica napus HOM05D003415 ORTHO05D001594 6.5e-20 102.1 200 40.0
C07p39370 Brassica napus HOM05D003415 ORTHO05D001594 1.1e-19 101.3 173 40.5
BraA09t36096Z Brassica rapa HOM05D003415 ORTHO05D001594 1.1e-19 101.3 193 40.4
Lsat_1_v5_gn_9_12441 Lactuca sativa HOM05D003415 ORTHO05D001594 1.5e-19 100.9 196 38.3
PGSC0003DMG400020162 Solanum tuberosum HOM05D003415 ORTHO05D001594 1.5e-19 100.9 196 34.2
Sc17g0002270 Simmondsia chinensis HOM05D003415 ORTHO05D001594 1.9e-19 100.5 184 37.0
Psat0s5292g0040 Pisum sativum HOM05D001175 ORTHO05D001594 3.2e-19 99.8 106 51.9
unitig_748.g7299 Utricularia gibba HOM05D003415 ORTHO05D001594 4.2e-19 99.4 179 34.6
A06p38960 Brassica napus HOM05D003415 ORTHO05D001594 5.5e-19 99.0 185 38.4
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 1.2e-18 97.8 80 60.0
ECA247G1071 Erigeron canadensis HOM05D003415 ORTHO05D001594 2.1e-18 97.1 181 37.6
CDE05G2570 Ceratophyllum demersum HOM05D003415 ORTHO05D001594 6.1e-18 95.5 189 35.4
Sabra14G0142800 Salix brachista HOM05D003415 ORTHO05D001594 6.1e-18 95.5 119 52.9
AUR62001103 Chenopodium quinoa HOM05D003415 ORTHO05D001594 2.0e-16 90.5 202 34.7
AUR62008928 Chenopodium quinoa HOM05D003415 ORTHO05D001594 2.6e-16 90.1 186 34.4
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 9.8e-16 88.2 86 53.5
SalBow2G2780 Salvia bowleyana HOM05D003415 ORTHO05D001594 2.2e-15 87.0 249 33.7
EL10Ac7g17856 Beta vulgaris HOM05D003415 ORTHO05D001594 8.3e-15 85.1 194 34.5
BcaB07g30041 Brassica carinata HOM05D003415 ORTHO05D001594 1.1e-14 84.7 225 32.0
Aa31LG10G10800 Aethionema arabicum HOM05D003415 ORTHO05D001594 1.4e-14 84.3 155 40.0
C02p56780 Brassica napus HOM05D003415 ORTHO05D001594 2.4e-14 83.6 180 33.9
ATR1147G016 Amborella trichopoda HOM05D003415 ORTHO05D001594 3.1e-14 83.2 207 33.3
CDE06G0847 Ceratophyllum demersum HOM05D003415 ORTHO05D001594 5.4e-14 82.4 178 34.3
SHI35373 Sapria himalayana HOM05D003415 ORTHO05D001594 1.6e-13 80.9 190 33.2
Psat3g016000 Pisum sativum HOM05D000017 ORTHO05D000013 3.5e-13 79.7 97 47.4
MBI11_g07427_MAGBIO Magnolia biondii HOM05D003415 ORTHO05D001594 4.5e-13 79.3 129 41.1
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.7e-12 77.4 59 62.7
CDE05G2723 Ceratophyllum demersum HOM05D003415 ORTHO05D001594 9.5e-11 71.6 227 30.4
PSO357G0522 Papaver somniferum HOM05D003415 ORTHO05D001594 1.6e-10 70.9 141 35.5
HPP92_000350 Vanilla planifolia HOM05D003415 ORTHO05D001594 3.6e-10 69.7 182 29.7
A07p06030 Brassica napus HOM05D003415 ORTHO05D001594 1.4e-09 67.8 102 42.2
Migut.N00203 Erythranthe guttata HOM05D003415 ORTHO05D001594 4.0e-09 66.2 128 38.3
DCAR_029194 Daucus carota HOM05D003415 ORTHO05D001594 9.8e-08 61.6 182 32.4
unitig_748.g8333 Utricularia gibba HOM05D003415 ORTHO05D001594 1.7e-07 60.8 119 35.3
HPP92_000417 Vanilla planifolia HOM05D003415 ORTHO05D001594 3.7e-07 59.7 162 30.9
Lalb_Chr01g0022271 Lupinus albus HOM05D003415 ORTHO05D001594 8.3e-07 58.5 61 52.5
Zm00001eb143390 Zea mays HOM05D003415 ORTHO05D001594 3.1e-06 56.6 170 32.4
CDE02G1932 Ceratophyllum demersum HOM05D003415 ORTHO05D001594 5.4e-06 55.8 150 32.7


User provided reference genes

Program Settings