Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1636.3 927 100.0
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1518.1 927 91.8
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1505.3 927 88.1
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1494.6 928 87.8
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1421.4 927 78.5
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1411.7 927 78.4
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1375.9 927 80.3
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1360.5 927 79.6
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1340.5 951 74.0
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1294.6 936 80.3
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1276.9 928 78.3
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1269.2 928 78.0
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1248.8 917 70.0
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1241.1 914 69.5
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1226.5 924 68.7
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1226.1 929 68.1
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1224.9 912 68.6
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1224.5 915 68.7
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1221.1 915 68.6
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1216.4 926 67.7
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1214.5 934 67.5
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1212.6 928 67.8
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1210.7 927 67.5
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1210.3 929 67.8
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1206.8 953 66.5
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1206.4 916 67.2
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1204.9 924 68.0
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1203.0 930 67.2
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1201.8 907 70.3
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1201.4 928 67.6
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1201.4 932 67.4
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1198.3 913 67.7
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1194.9 930 69.4
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1192.9 903 68.1
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1192.2 962 68.3
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1191.8 920 69.3
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1190.3 922 70.8
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1188.3 920 67.0
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1187.9 898 77.1
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1187.9 913 67.4
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1185.6 920 71.0
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1176.4 901 70.9
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1176.0 924 66.2
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1175.6 920 66.3
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1175.2 936 65.2
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1172.9 918 65.9
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1171.8 918 66.7
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1169.1 918 67.8
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1166.8 918 66.7
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1158.3 934 63.0
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1156.7 904 66.3
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1156.7 924 65.2
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1156.4 925 65.3
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1154.8 917 65.2
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1154.8 925 65.4
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1152.9 929 65.2
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1152.5 925 64.8
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1151.7 941 63.8
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1151.3 924 65.4
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1151.3 893 68.4
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1151.3 902 65.4
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1149.8 930 64.9
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1149.4 929 67.8
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1148.3 925 65.4
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1146.3 928 64.4
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1146.3 901 66.6
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1145.6 918 69.3
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1143.3 918 64.7
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1142.9 920 69.5
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1139.4 928 67.3
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1139.0 913 64.6
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1137.5 935 68.7
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1136.3 935 68.6
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1135.9 935 68.6
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1135.9 926 64.3
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1135.6 918 68.8
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1134.8 936 63.8
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1133.6 920 69.2
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1132.9 873 66.8
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1131.3 933 69.8
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1129.4 902 71.0
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1129.0 919 67.4
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1128.2 914 67.0
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1125.5 918 64.3
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1125.5 915 64.5
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1125.2 920 64.6
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1124.4 932 64.3
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1122.8 918 64.4
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1122.5 949 66.7
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1121.3 915 65.7
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1119.8 877 66.9
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1115.1 906 65.3
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1112.4 951 67.2
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1111.3 927 63.1
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1106.7 881 69.6
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1101.7 885 65.4
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1100.5 931 62.5
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1095.5 1000 65.5
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1091.6 920 63.0
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1079.7 897 68.1
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 6.3e-312 1074.7 1015 58.7
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 1.6e-310 1069.3 915 60.8
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 5.3e-309 1064.3 889 63.9
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 6.9e-309 1063.9 928 60.7
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 6.5e-307 1057.4 972 57.7
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 2.2e-302 1042.3 905 61.2
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 2.8e-302 1042.0 814 64.7
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 3.1e-301 1038.5 926 60.7
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 8.2e-294 1013.8 864 62.0
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 1.3e-291 1006.5 923 56.8
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 1.2e-279 966.8 921 57.2
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 2.9e-275 952.2 917 57.6
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 8.8e-272 940.6 767 62.3
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 1.2e-265 920.2 592 75.3
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 2.0e-263 912.9 754 68.4
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 1.6e-260 903.3 766 63.2
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 7.8e-260 901.0 780 60.4
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 3.9e-259 898.7 934 51.3
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 3.1e-256 889.0 939 55.4
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 4.0e-256 888.6 927 54.6
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.3e-251 873.6 503 80.9
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 1.5e-250 870.2 964 53.0
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 1.5e-239 833.6 913 50.5
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 4.3e-226 788.9 723 58.5
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 8.2e-193 678.3 372 85.8
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 3.4e-183 646.4 727 51.9
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 6.3e-169 599.0 597 57.3
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 8.8e-163 578.6 380 71.8
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.1e-157 561.6 350 76.3
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 4.7e-156 556.2 339 75.2
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.8e-153 547.0 359 71.6
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 4.1e-152 543.1 465 61.1
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 6.8e-147 525.8 559 55.8
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 1.2e-140 505.0 708 43.8
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 9.5e-133 478.8 949 35.4
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 2.9e-129 467.2 991 37.9
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 1.6e-116 424.9 300 68.0
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 5.3e-107 393.3 558 46.2
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 4.9e-105 386.7 297 65.0
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 3.0e-102 377.5 993 33.4
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.1e-99 369.0 472 50.0
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 5.1e-94 350.1 551 41.0
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.8e-75 288.5 379 50.4
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 1.0e-73 282.7 166 78.9
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 1.2e-53 216.1 326 40.5
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 2.3e-46 191.8 139 79.1
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 1.5e-40 172.6 102 79.4
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 3.5e-34 151.4 105 69.5
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 2.3e-33 148.7 107 63.6
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 2.3e-30 138.7 105 67.6
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 7.5e-21 107.1 77 67.5
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.7e-20 105.9 61 78.7
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 1.1e-19 103.2 79 64.6
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 6.0e-18 97.4 92 62.0
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 6.8e-14 84.0 57 66.7
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-13 83.2 87 50.6
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.4e-13 81.3 45 77.8
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 7.5e-13 80.5 87 50.6
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 1.3e-09 69.7 66 50.0
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 5.1e-09 67.8 58 56.9
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 5.1e-09 67.8 40 85.0
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 1.1e-08 66.6 40 65.0
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 1.2e-07 63.2 52 59.6
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 2.4e-06 58.9 47 61.7


User provided reference genes

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