Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 1.8e-37 158.7 75 100.0
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 5.2e-21 104.0 77 68.8
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 3.3e-20 101.3 77 66.2
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 3.3e-20 101.3 77 66.2
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 5.7e-20 100.5 77 66.2
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 1.3e-19 99.4 77 64.9
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 3.7e-19 97.8 77 66.2
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 4.8e-19 97.4 77 64.9
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 3.1e-18 94.7 77 63.6
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 3.1e-18 94.7 77 63.6
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 3.1e-18 94.7 77 61.0
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 3.1e-18 94.7 74 66.2
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 4.1e-18 94.4 77 61.0
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 4.1e-18 94.4 77 61.0
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 4.1e-18 94.4 77 61.0
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 2.0e-17 92.0 76 60.5
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 2.0e-17 92.0 51 82.4
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 2.6e-17 91.7 74 62.2
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 3.5e-17 91.3 77 59.7
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 3.5e-17 91.3 77 59.7
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 3.5e-17 91.3 77 59.7
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 3.5e-17 91.3 77 59.7
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 3.5e-17 91.3 77 61.0
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 7.7e-17 90.1 76 59.2
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 7.7e-17 90.1 77 58.4
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.0e-16 89.7 77 59.7
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 1.3e-16 89.4 80 62.5
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 2.2e-16 88.6 77 59.7
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 2.2e-16 88.6 76 60.5
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 2.9e-16 88.2 77 58.4
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 2.9e-16 88.2 76 59.2
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 2.9e-16 88.2 77 59.7
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 2.9e-16 88.2 77 59.7
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 5.0e-16 87.4 77 58.4
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 5.0e-16 87.4 77 58.4
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 8.5e-16 86.7 77 58.4
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 8.5e-16 86.7 77 57.1
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 1.1e-15 86.3 77 57.1
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 1.1e-15 86.3 76 57.9
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 1.1e-15 86.3 76 57.9
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 1.1e-15 86.3 76 57.9
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 1.5e-15 85.9 77 55.8
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 1.5e-15 85.9 80 60.0
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 1.5e-15 85.9 77 55.8
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 1.9e-15 85.5 77 57.1
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 1.9e-15 85.5 77 58.4
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 1.9e-15 85.5 77 57.1
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 3.2e-15 84.7 50 76.0
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 3.2e-15 84.7 72 61.1
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 4.2e-15 84.3 80 61.2
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 4.2e-15 84.3 77 57.1
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 4.2e-15 84.3 72 59.7
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 5.5e-15 84.0 77 59.7
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 5.5e-15 84.0 77 54.5
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 5.5e-15 84.0 77 59.7
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 5.5e-15 84.0 77 55.8
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 7.2e-15 83.6 77 54.5
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 7.2e-15 83.6 77 54.5
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 7.2e-15 83.6 77 54.5
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 7.2e-15 83.6 77 54.5
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 7.2e-15 83.6 77 54.5
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 7.2e-15 83.6 77 54.5
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 7.2e-15 83.6 77 55.8
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 9.4e-15 83.2 77 54.5
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 9.4e-15 83.2 74 58.1
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 9.4e-15 83.2 72 58.3
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 1.2e-14 82.8 77 54.5
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 1.2e-14 82.8 84 57.1
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 1.6e-14 82.4 77 58.4
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 1.6e-14 82.4 77 53.2
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 1.6e-14 82.4 77 53.2
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 1.6e-14 82.4 77 53.2
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 1.6e-14 82.4 77 54.5
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 1.6e-14 82.4 77 54.5
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 1.6e-14 82.4 80 56.2
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 2.1e-14 82.0 77 53.2
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 2.1e-14 82.0 77 53.2
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 2.1e-14 82.0 77 53.2
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 2.1e-14 82.0 51 72.5
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 2.1e-14 82.0 80 58.8
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 2.1e-14 82.0 80 58.8
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 2.1e-14 82.0 78 56.4
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 2.7e-14 81.6 78 53.8
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 2.7e-14 81.6 77 53.2
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 2.7e-14 81.6 72 56.9
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 2.7e-14 81.6 77 57.1
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 3.6e-14 81.3 85 52.9
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 3.6e-14 81.3 77 55.8
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 3.6e-14 81.3 79 58.2
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 4.7e-14 80.9 75 57.3
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 4.7e-14 80.9 77 54.5
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 4.7e-14 80.9 77 54.5
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 4.7e-14 80.9 77 51.9
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 6.1e-14 80.5 73 60.3
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 8.0e-14 80.1 50 72.0
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 8.0e-14 80.1 77 51.9
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 1.0e-13 79.7 77 51.9
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.0e-13 79.7 77 55.8
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 1.0e-13 79.7 76 59.2
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 1.4e-13 79.3 77 51.9
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 1.4e-13 79.3 48 72.9
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 1.8e-13 79.0 77 50.6
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 1.8e-13 79.0 47 80.9
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 1.8e-13 79.0 78 56.4
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 2.3e-13 78.6 78 57.7
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 2.3e-13 78.6 79 55.7
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 3.0e-13 78.2 76 55.3
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 3.0e-13 78.2 69 55.1
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 4.0e-13 77.8 46 73.9
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 4.0e-13 77.8 59 64.4
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 5.2e-13 77.4 84 50.0
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 8.8e-13 76.6 76 51.3
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 8.8e-13 76.6 72 55.6
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 2.0e-12 75.5 71 52.1
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 2.6e-12 75.1 69 55.1
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 4.4e-12 74.3 72 52.8
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 3.7e-11 71.2 63 55.6
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 3.7e-11 71.2 65 55.4
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 4.8e-11 70.9 68 51.5
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 4.8e-11 70.9 63 57.1
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 4.8e-11 70.9 63 57.1
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 1.8e-10 68.9 97 46.4
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 3.1e-10 68.2 74 47.3
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 3.1e-10 68.2 74 47.3
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 4.1e-10 67.8 43 69.8
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 5.3e-10 67.4 66 50.0
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 7.0e-10 67.0 47 63.8
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 7.0e-10 67.0 73 50.7
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 3.5e-09 64.7 76 47.4
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.0e-08 63.2 78 47.4
Phvul.008G161300 Phaseolus vulgaris HOM05D005002 ORTHO05D307853 1.1e-07 59.7 39 76.9
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 1.2e-06 56.2 37 73.0
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 4.7e-06 54.3 80 40.0


User provided reference genes

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