Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 2.5e-217 758.4 370 100.0
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 2.0e-211 738.8 370 97.0
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 1.8e-207 725.7 370 95.9
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 1.2e-206 723.0 370 94.9
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 1.1e-204 716.5 359 96.9
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 2.5e-201 705.3 370 92.2
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 3.3e-201 704.9 370 90.5
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 6.4e-197 690.6 370 89.7
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 5.4e-196 687.6 370 90.0
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 1.2e-195 686.4 370 90.3
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 1.6e-195 686.0 409 83.4
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 2.7e-195 685.3 370 89.2
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 1.3e-194 682.9 371 90.3
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.3e-194 682.9 370 89.7
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 3.9e-194 681.4 370 89.5
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 1.5e-193 679.5 370 88.6
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 2.8e-192 675.2 370 88.1
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 6.2e-192 674.1 366 88.8
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 6.2e-192 674.1 370 87.8
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 1.1e-191 673.3 371 88.7
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 3.1e-191 671.8 370 87.6
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 5.2e-191 671.0 370 86.8
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 1.5e-190 669.5 370 87.0
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 2.0e-190 669.1 370 86.5
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 2.0e-190 669.1 370 86.5
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 2.0e-190 669.1 370 87.6
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 2.6e-190 668.7 370 87.3
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 3.4e-190 668.3 370 88.1
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 3.4e-190 668.3 370 87.8
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 3.4e-190 668.3 370 87.8
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.3e-189 666.4 370 87.6
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 8.3e-189 663.7 370 87.8
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 8.3e-189 663.7 377 86.7
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 8.3e-189 663.7 370 87.6
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.4e-188 662.9 370 87.3
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 2.4e-188 662.1 371 86.8
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 3.2e-188 661.8 370 87.0
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 5.4e-188 661.0 370 87.0
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 7.0e-188 660.6 370 86.5
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 9.2e-188 660.2 371 86.8
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.2e-187 659.8 371 86.3
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.2e-187 659.8 371 86.3
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 4.6e-187 657.9 366 86.6
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 6.0e-187 657.5 371 86.3
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 7.8e-187 657.1 366 86.1
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 1.3e-186 656.4 386 83.4
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.7e-186 656.0 371 85.2
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 2.3e-186 655.6 366 86.9
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 1.5e-185 652.9 371 86.0
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 1.9e-185 652.5 361 87.8
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 5.6e-185 651.0 371 84.6
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 3.6e-184 648.3 371 84.4
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 4.7e-184 647.9 370 84.6
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 1.4e-183 646.4 370 85.1
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 3.1e-183 645.2 371 85.7
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 3.1e-183 645.2 369 84.8
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 1.2e-182 643.3 371 83.3
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 2.0e-182 642.5 370 84.1
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 2.6e-182 642.1 370 84.1
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 2.6e-182 642.1 370 84.9
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 3.4e-182 641.7 370 84.9
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 4.4e-182 641.3 370 83.5
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 5.8e-182 641.0 372 85.2
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 7.5e-182 640.6 371 84.6
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 9.9e-182 640.2 368 85.3
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 1.7e-181 639.4 371 84.4
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 1.7e-181 639.4 370 85.1
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 2.9e-181 638.6 371 84.4
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 6.4e-181 637.5 371 83.0
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 1.4e-180 636.3 371 83.6
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 1.4e-180 636.3 370 84.6
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 1.4e-180 636.3 373 83.1
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 1.9e-180 636.0 371 81.7
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 3.2e-180 635.2 367 83.7
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 3.2e-180 635.2 351 87.2
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 4.1e-180 634.8 371 83.3
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 7.1e-180 634.0 372 84.9
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 7.1e-180 634.0 373 82.8
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 9.2e-180 633.6 373 82.8
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 1.2e-179 633.3 371 83.3
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 1.2e-179 633.3 356 86.5
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 1.2e-179 633.3 369 82.7
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 1.2e-179 633.3 397 79.8
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 2.1e-179 632.5 370 83.8
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 3.5e-179 631.7 370 84.1
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 2.3e-178 629.0 373 83.1
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 3.0e-178 628.6 370 81.9
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 6.6e-178 627.5 373 82.8
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 1.5e-177 626.3 365 82.5
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.5e-177 626.3 384 81.5
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 2.1e-176 622.5 374 81.8
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.8e-176 622.1 373 82.8
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 4.7e-176 621.3 402 77.6
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 4.7e-176 621.3 372 83.6
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 1.4e-175 619.8 358 85.2
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 1.8e-175 619.4 371 81.4
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 8.9e-175 617.1 362 82.3
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 3.4e-174 615.1 369 81.8
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 9.9e-174 613.6 362 81.8
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 9.9e-174 613.6 362 81.8
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 9.9e-174 613.6 362 81.8
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 9.9e-174 613.6 362 81.8
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 9.9e-174 613.6 362 81.8
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 1.9e-172 609.4 370 78.1
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 2.4e-172 609.0 350 84.6
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 3.2e-172 608.6 351 84.6
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 5.4e-172 607.8 370 78.9
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 1.0e-170 603.6 369 80.5
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 2.3e-170 602.4 370 80.0
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 5.6e-169 597.8 368 80.7
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 1.6e-168 596.3 362 82.0
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 6.2e-168 594.3 370 81.1
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 6.2e-168 594.3 369 79.1
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 6.2e-168 594.3 369 79.7
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 2.4e-167 592.4 351 83.2
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 1.2e-166 590.1 370 78.4
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 4.4e-166 588.2 370 77.6
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 4.4e-166 588.2 368 80.4
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 2.9e-165 585.5 372 78.2
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 4.9e-165 584.7 368 75.3
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 1.4e-164 583.2 368 75.3
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 1.9e-164 582.8 360 81.9
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 7.1e-164 580.9 370 77.0
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 2.1e-163 579.3 360 78.9
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 6.0e-163 577.8 433 69.3
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 1.0e-162 577.0 360 76.7
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 3.9e-162 575.1 351 80.3
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 3.3e-161 572.0 367 76.0
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 5.3e-159 564.7 371 75.7
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 1.2e-158 563.5 366 74.9
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 1.2e-158 563.5 371 75.7
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 2.9e-157 558.9 367 74.1
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 8.4e-157 557.4 366 73.2
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 3.5e-155 552.0 371 74.4
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 7.4e-153 544.3 362 73.5
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 6.9e-151 537.7 373 73.5
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 2.6e-150 535.8 397 71.5
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 2.2e-149 532.7 361 70.6
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 3.2e-148 528.9 370 67.3
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 1.6e-147 526.6 355 74.1
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 1.0e-146 523.9 371 67.9
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 1.8e-146 523.1 370 66.8
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 1.5e-145 520.0 369 68.0
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 1.1e-143 513.8 369 66.1
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 8.4e-141 504.2 368 66.6
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 3.0e-138 495.7 371 64.7
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 7.4e-137 491.1 288 83.3
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 4.8e-136 488.4 348 73.0
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 6.3e-136 488.0 325 74.5
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 4.5e-134 481.9 283 82.0
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 1.0e-133 480.7 280 83.2
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 8.5e-133 477.6 365 63.6
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 1.1e-132 477.2 358 66.2
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 2.5e-132 476.1 281 84.0
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 7.2e-132 474.6 279 82.4
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 3.9e-130 468.8 277 83.0
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 1.7e-128 463.4 327 71.6
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 6.3e-128 461.5 278 82.0
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 1.5e-121 440.3 388 56.7
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 2.0e-121 439.9 275 80.7
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 2.2e-117 426.4 366 55.2
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 1.1e-116 424.1 239 85.8
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 1.0e-114 417.5 285 71.9
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 2.6e-113 412.9 396 53.5
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 1.8e-111 406.8 275 71.3
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 8.5e-109 397.9 369 53.9
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.7e-93 347.1 198 85.9
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 4.2e-92 342.4 200 83.5
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 2.8e-91 339.7 273 65.9
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 1.8e-87 327.0 177 88.7
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 3.5e-86 322.8 197 79.7
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 2.2e-72 276.9 171 80.1
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 2.9e-56 223.4 268 52.2
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 2.6e-49 200.3 363 32.5
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 1.6e-46 191.0 113 85.8
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 1.4e-39 167.9 120 68.3
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 5.5e-39 166.0 388 25.8
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 7.1e-39 165.6 148 60.8
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 3.5e-38 163.3 120 66.7
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 1.6e-35 154.5 317 30.0
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 2.0e-33 147.5 302 30.8
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 5.8e-33 146.0 115 63.5
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 4.2e-31 139.8 84 76.2
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 6.3e-11 72.8 49 79.6
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 3.8e-08 63.5 68 51.5


User provided reference genes

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