Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 0.0e+00 1703.0 938 100.0
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 0.0e+00 1538.9 957 89.9
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 0.0e+00 1360.5 953 81.0
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 0.0e+00 1358.6 956 81.1
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 0.0e+00 1256.9 960 74.5
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 0.0e+00 1253.0 964 75.2
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 0.0e+00 1244.2 961 69.2
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 0.0e+00 1228.8 961 73.9
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 0.0e+00 1222.2 961 74.1
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1210.7 963 67.9
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1205.3 963 68.0
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 0.0e+00 1195.6 965 68.5
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 0.0e+00 1121.3 955 64.6
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 0.0e+00 1094.7 968 62.3
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 0.0e+00 1093.2 892 70.5
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 0.0e+00 1080.9 971 62.3
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 0.0e+00 1075.8 968 61.9
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 2.6e-311 1072.0 967 61.8
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 8.3e-310 1067.0 961 61.9
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 9.2e-309 1063.5 980 61.1
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 5.0e-307 1057.7 1046 57.6
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 3.6e-305 1051.6 960 66.4
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 1.8e-304 1049.3 959 65.9
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 1.7e-302 1042.7 972 64.9
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 5.4e-301 1037.7 960 65.7
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 9.2e-301 1036.9 960 58.1
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 5.9e-300 1034.2 962 65.7
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 1.3e-299 1033.1 972 60.2
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 1.7e-299 1032.7 961 65.9
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 1.1e-298 1030.0 962 59.7
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 1.5e-298 1029.6 976 56.8
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 2.1e-297 1025.8 963 58.4
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 1.4e-296 1023.1 973 63.5
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 4.9e-294 1014.6 964 61.9
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 2.4e-293 1012.3 952 60.8
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 3.2e-293 1011.9 961 58.8
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 4.1e-293 1011.5 953 59.2
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 7.0e-293 1010.7 970 61.3
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 1.6e-292 1009.6 993 62.6
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 2.0e-292 1009.2 883 61.9
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 2.7e-292 1008.8 974 63.9
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 6.0e-292 1007.7 891 61.3
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 1.0e-291 1006.9 964 63.5
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 3.0e-291 1005.4 962 63.5
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 4.7e-289 998.0 943 58.7
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 6.2e-289 997.7 952 58.9
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 3.1e-288 995.3 876 67.4
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 1.2e-287 993.4 974 61.4
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 2.6e-287 992.3 970 61.3
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 4.4e-287 991.5 891 60.6
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 1.3e-286 989.9 982 59.0
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 1.7e-286 989.6 974 61.1
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 6.4e-286 987.6 961 57.4
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 1.1e-285 986.9 979 60.9
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 1.9e-285 986.1 889 60.4
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 4.1e-285 984.9 961 63.7
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 5.4e-285 984.6 965 61.0
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 2.1e-284 982.6 989 56.0
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 6.6e-283 977.6 964 62.0
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 4.3e-282 974.9 963 57.7
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 4.3e-282 974.9 965 57.6
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 1.2e-281 973.4 963 57.9
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 2.1e-281 972.6 891 64.8
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 4.7e-281 971.5 961 58.2
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 2.6e-279 965.7 883 57.6
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 1.9e-277 959.5 961 60.6
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 4.1e-277 958.4 953 54.1
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 7.8e-276 954.1 1004 54.8
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 3.9e-275 951.8 978 60.3
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 5.2e-272 941.4 964 55.3
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 3.4e-271 938.7 962 55.5
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 2.1e-268 929.5 997 54.2
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 2.7e-268 929.1 961 55.2
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 7.8e-268 927.5 861 58.8
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 6.2e-265 917.9 882 57.4
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 5.1e-259 898.3 893 55.9
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 8.7e-259 897.5 971 57.5
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 4.3e-258 895.2 981 53.2
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 7.4e-258 894.4 910 56.4
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 1.4e-256 890.2 970 53.0
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 1.3e-254 883.6 965 57.6
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 2.1e-252 876.3 969 56.9
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 1.6e-249 866.7 968 56.9
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 5.8e-247 858.2 968 56.8
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 1.7e-246 856.7 966 56.6
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 1.7e-246 856.7 966 56.6
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 1.5e-242 843.6 962 55.9
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 4.3e-242 842.0 978 56.4
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 2.1e-241 839.7 963 56.3
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 2.1e-241 839.7 963 56.3
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 5.3e-240 835.1 964 56.0
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 2.6e-239 832.8 816 57.0
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 1.0e-238 830.9 961 55.2
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 1.7e-238 830.1 960 55.3
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 2.2e-238 829.7 971 50.6
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 1.9e-237 826.6 971 54.9
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 5.5e-237 825.1 961 50.3
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 7.2e-237 824.7 965 49.6
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 1.8e-224 783.5 990 47.8
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 7.7e-207 724.9 771 53.0
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 3.2e-205 719.5 880 49.7
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 5.7e-202 708.8 838 51.1
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 1.7e-169 600.9 876 43.9
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 4.9e-169 599.4 605 61.3
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 7.1e-160 568.9 959 44.6
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 2.2e-145 520.8 813 45.6
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 1.0e-129 468.8 505 53.9
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 2.7e-119 434.1 815 36.3
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 2.8e-116 424.1 558 43.4
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 6.3e-108 396.4 473 49.0
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 1.6e-79 302.0 853 28.4
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 3.0e-78 297.7 870 29.7
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 7.0e-67 260.0 376 43.6
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 2.8e-63 248.1 515 37.1
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 1.9e-56 225.3 884 24.1
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 6.8e-54 216.9 215 50.2
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 4.6e-50 204.1 216 47.2
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 4.7e-47 194.1 172 57.6
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 4.9e-28 131.0 81 77.8
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 1.1e-24 119.8 67 80.6
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 5.3e-22 110.9 112 50.9
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 1.4e-19 102.8 66 75.8
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 2.7e-18 98.6 90 56.7
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 3.5e-18 98.2 90 56.7
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 1.1e-14 86.7 100 52.0
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 1.8e-14 85.9 98 51.0
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 6.9e-14 84.0 155 35.5
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 3.4e-13 81.6 391 26.6
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 3.2e-11 75.1 37 94.6
TAR622G0109 Trochodendron aralioides HOM05D048081 ORTHO05D051495 6.9e-06 57.4 55 54.5


User provided reference genes

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