Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 4.0e-299 1030.8 571 100.0
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 1.4e-214 750.0 576 74.5
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 4.2e-171 605.5 581 59.0
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.9e-168 596.7 574 58.0
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 2.8e-167 592.8 575 57.4
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 4.0e-166 589.0 575 57.4
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 1.6e-162 577.0 573 56.7
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 5.1e-161 572.0 567 56.6
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 8.4e-156 554.7 567 55.0
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 8.4e-156 554.7 550 55.5
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 8.4e-148 528.1 400 81.5
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 4.6e-146 522.3 551 52.8
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 1.6e-138 497.3 505 55.4
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 8.2e-127 458.4 522 50.6
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 7.9e-122 441.8 550 47.5
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 4.4e-120 436.0 555 46.1
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 1.1e-118 431.4 521 47.0
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 7.0e-118 428.7 538 47.0
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 7.0e-118 428.7 538 47.0
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 3.5e-117 426.4 571 45.4
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 2.1e-114 417.2 539 44.9
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 2.7e-114 416.8 526 47.0
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 6.1e-114 415.6 531 49.3
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 7.5e-112 408.7 580 45.2
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.2e-111 407.1 580 45.0
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.2e-111 407.1 523 46.3
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 4.8e-111 406.0 578 45.3
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 4.8e-111 406.0 571 43.6
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 8.2e-111 405.2 426 52.1
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 4.1e-110 402.9 473 47.8
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 1.2e-109 401.4 527 45.0
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 4.5e-109 399.4 517 45.3
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 5.9e-109 399.1 550 45.1
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.0e-108 398.3 561 43.5
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 5.0e-108 396.0 514 45.3
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 5.0e-108 396.0 537 45.3
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 8.5e-108 395.2 538 43.7
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 2.5e-107 393.7 529 45.2
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.5e-107 393.7 527 45.9
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 3.2e-107 393.3 541 44.0
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 3.6e-106 389.8 523 43.8
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 6.1e-106 389.0 513 45.2
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 1.4e-105 387.9 528 44.3
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 4.0e-105 386.3 567 42.5
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 4.4e-104 382.9 552 43.7
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 7.5e-104 382.1 580 41.7
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 2.8e-103 380.2 453 47.7
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 4.8e-103 379.4 555 43.8
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.1e-102 376.3 528 43.0
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 1.6e-101 374.4 516 45.2
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 2.0e-101 374.0 565 41.4
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 5.9e-101 372.5 519 43.0
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 5.0e-100 369.4 547 41.9
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 8.5e-100 368.6 574 40.9
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 2.5e-99 367.1 566 41.5
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 3.2e-99 366.7 505 43.4
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 4.2e-99 366.3 550 40.0
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.2e-99 366.3 568 41.5
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 4.2e-99 366.3 557 41.8
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 9.4e-99 365.2 451 46.1
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 9.4e-99 365.2 457 47.9
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 9.4e-99 365.2 495 43.8
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.6e-98 364.4 538 41.8
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 1.6e-98 364.4 543 41.6
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 1.0e-97 361.7 541 42.3
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 1.0e-97 361.7 580 41.0
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 3.0e-97 360.1 561 40.6
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 5.2e-97 359.4 536 42.4
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 1.5e-96 357.8 548 42.2
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 1.5e-96 357.8 522 44.4
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 9.8e-96 355.1 539 41.7
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 1.3e-95 354.8 457 45.1
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 8.3e-95 352.1 465 44.5
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.8e-94 350.9 550 40.9
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 5.4e-94 349.4 541 41.2
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 2.0e-93 347.4 545 39.6
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 1.0e-92 345.1 535 41.5
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 2.3e-92 344.0 555 39.1
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 5.0e-92 342.8 556 41.0
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 8.6e-92 342.0 537 44.1
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 8.6e-92 342.0 515 40.6
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 2.5e-91 340.5 519 42.6
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 2.8e-90 337.0 524 39.7
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.7e-90 336.3 549 39.7
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 8.0e-90 335.5 557 41.5
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 6.8e-89 332.4 531 39.5
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 2.4e-86 323.9 499 39.5
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 3.2e-86 323.6 439 43.1
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 2.8e-82 310.5 495 37.4
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 8.0e-82 308.9 495 39.2
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 2.0e-80 304.3 544 35.8
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 4.9e-79 299.7 558 35.1
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 9.2e-78 295.4 532 34.8
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 6.0e-77 292.7 534 38.0
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 8.6e-76 288.9 151 90.1
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 1.1e-75 288.5 519 33.9
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 1.1e-75 288.5 519 33.9
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 1.9e-75 287.7 519 34.3
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 2.5e-75 287.3 519 35.1
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 3.3e-75 287.0 519 34.3
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.3e-75 286.6 531 38.0
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 7.3e-75 285.8 234 59.8
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 2.1e-74 284.3 519 33.9
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 4.4e-72 276.6 453 40.8
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 5.8e-72 276.2 525 34.9
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 2.1e-69 267.7 547 33.8
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 4.6e-69 266.5 417 42.7
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 1.3e-68 265.0 519 35.1
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.3e-68 265.0 535 32.3
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 4.4e-64 250.0 560 33.9
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.7e-52 211.5 223 51.6
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 3.9e-52 210.3 358 41.6
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 4.3e-51 206.8 172 57.6
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.3e-51 206.8 391 37.3
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 4.3e-51 206.8 355 40.8
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 6.2e-50 203.0 570 30.2
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 2.4e-49 201.1 329 38.9
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.4e-46 191.0 223 43.0
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.5e-43 181.8 350 36.6
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.1e-42 177.9 378 38.1
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.3e-36 158.7 229 38.4
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.3e-36 157.9 329 37.4
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 6.7e-36 156.4 222 41.4
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 2.6e-32 144.4 242 36.0
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.3e-31 142.1 298 29.5
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 8.4e-31 139.4 282 30.5
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.4e-30 138.7 213 36.6
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 6.7e-28 129.8 380 30.3
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 6.3e-26 123.2 130 49.2
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 4.1e-25 120.6 229 33.2
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 6.9e-25 119.8 93 57.0
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 6.9e-25 119.8 93 57.0
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.5e-22 111.3 170 42.4
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.7e-21 107.8 158 43.0
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 9.1e-17 92.8 224 28.6
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-16 91.7 223 28.3
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 2.9e-15 87.8 161 32.3
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 4.2e-14 84.0 165 30.9
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 4.2e-14 84.0 165 30.9
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 4.2e-14 84.0 165 30.9
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 6.1e-13 80.1 176 27.3
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 6.1e-13 80.1 176 27.3
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 2.0e-08 65.1 65 49.2
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.4e-06 58.9 109 40.4


User provided reference genes

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