Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G071000 Phaseolus vulgaris HOM05D001879 ORTHO05D007957 0.0e+00 1634.0 850 100.0
VMungo1309G0716 Vigna mungo HOM05D001879 ORTHO05D007957 0.0e+00 1523.8 853 93.3
Glyma.04G045100 Glycine max HOM05D001879 ORTHO05D007957 0.0e+00 1363.2 861 84.4
Glyma.06G045600 Glycine max HOM05D001879 ORTHO05D007957 0.0e+00 1339.7 857 84.2
Ca_15906_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007957 0.0e+00 1173.7 859 73.9
arahy.Tifrunner.gnm1.ann1.0Z12M9 Arachis hypogaea HOM05D001879 ORTHO05D007957 0.0e+00 1163.3 867 73.1
Lj1g0023876 Lotus japonicus HOM05D001879 ORTHO05D007957 0.0e+00 1163.3 861 73.9
arahy.Tifrunner.gnm1.ann1.D4I9HU Arachis hypogaea HOM05D001879 ORTHO05D007957 0.0e+00 1157.9 860 73.4
Lalb_Chr11g0062861 Lupinus albus HOM05D001879 ORTHO05D007957 0.0e+00 1147.9 880 72.3
Psat0s3943g0040 Pisum sativum HOM05D001879 ORTHO05D007957 0.0e+00 1131.7 863 71.8
Medtr3g103040 Medicago truncatula HOM05D001879 ORTHO05D007957 0.0e+00 1086.6 863 69.6
TPR.G33684 Trifolium pratense HOM05D001879 ORTHO05D007957 3.3e-305 1051.6 911 65.1
Cfa013682 Carpinus fangiana HOM05D001879 ORTHO05D007957 7.8e-283 977.2 897 60.0
QL12p037915 Quercus lobata HOM05D001879 ORTHO05D007957 4.4e-278 961.4 881 61.0
CANSAT11G0135 Cannabis sativa HOM05D001879 ORTHO05D007957 5.4e-276 954.5 897 59.9
Dinv44961 Davidia involucrata HOM05D001879 ORTHO05D007957 2.8e-272 942.2 791 64.3
GSVIVG01009355001 Vitis vinifera HOM05D001879 ORTHO05D007957 3.1e-271 938.7 824 60.8
MD15G1071100 Malus domestica HOM05D001879 ORTHO05D007957 5.3e-271 937.9 887 60.3
Gorai.002G135500 Gossypium raimondii HOM05D001879 ORTHO05D007957 3.4e-270 935.3 902 59.9
Gohir.A01G122900 Gossypium hirsutum HOM05D001879 ORTHO05D007957 1.9e-268 929.5 909 58.7
CiPaw.07G175800 Carya illinoinensis HOM05D001879 ORTHO05D007957 3.9e-266 921.8 892 58.4
Potri.014G016900 Populus trichocarpa HOM05D001879 ORTHO05D007957 5.1e-266 921.4 886 58.2
FvH4_2g33210 Fragaria vesca HOM05D001879 ORTHO05D007957 5.6e-265 917.9 921 56.5
MD08G1085900 Malus domestica HOM05D001879 ORTHO05D007957 5.6e-265 917.9 934 55.8
Gohir.D01G110700 Gossypium hirsutum HOM05D001879 ORTHO05D007957 8.1e-264 914.1 914 58.5
FAN27G1994 Fragaria x ananassa HOM05D001879 ORTHO05D007957 9.0e-263 910.6 914 56.6
Actinidia38101 Actinidia chinensis HOM05D001879 ORTHO05D007957 2.0e-262 909.4 867 57.8
TWI56G1363 Tripterygium wilfordii HOM05D001879 ORTHO05D007957 5.8e-262 907.9 899 54.8
Eucgr.F02257 Eucalyptus grandis HOM05D001879 ORTHO05D007957 1.3e-261 906.7 805 61.6
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 6.4e-261 904.4 890 57.1
FAN15G2911 Fragaria x ananassa HOM05D001879 ORTHO05D007957 6.4e-261 904.4 922 55.2
CsaV3_4G035000 Cucumis sativus L. HOM05D001879 ORTHO05D007957 8.4e-261 904.0 889 57.3
Manes.05G181300 Manihot esculenta HOM05D001879 ORTHO05D007957 4.2e-260 901.7 894 56.7
FAN20G0243 Fragaria x ananassa HOM05D001879 ORTHO05D007957 5.5e-260 901.4 917 55.9
RcHm_v2.0_Chr6g0309461 Rosa chinensis HOM05D001879 ORTHO05D007957 2.1e-259 899.4 806 59.8
Hma1.2p1_0210F.1_g089520 Hydrangea macrophylla HOM05D001879 ORTHO05D007957 6.0e-259 897.9 894 56.8
ClCG05G020560 Citrullus lanatus HOM05D001879 ORTHO05D007957 1.0e-258 897.1 918 55.7
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 2.5e-257 892.5 819 61.8
Actinidia08249 Actinidia chinensis HOM05D001879 ORTHO05D007957 7.4e-257 891.0 795 60.9
Lj4A759G42 Lonicera japonica HOM05D001879 ORTHO05D007957 8.1e-256 887.5 868 57.6
Prupe.1G423800 Prunus persica HOM05D001879 ORTHO05D007957 1.4e-252 876.7 885 57.4
FAN24G3463 Fragaria x ananassa HOM05D001879 ORTHO05D007957 3.5e-251 872.1 966 53.5
Sabra14G0010700 Salix brachista HOM05D001879 ORTHO05D007957 3.0e-250 869.0 899 54.8
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 2.6e-246 855.9 893 56.0
Cpa.g.sc142.17 Carica papaya HOM05D001879 ORTHO05D007957 2.5e-244 849.4 881 56.9
Nitab4.5_0003803g0010 Nicotiana tabacum HOM05D001879 ORTHO05D007957 2.5e-244 849.4 891 54.1
Cc10_g05700 Coffea canephora HOM05D001879 ORTHO05D007957 1.6e-243 846.7 895 53.4
EL10Ac1g02390 Beta vulgaris HOM05D001879 ORTHO05D007957 5.1e-242 841.6 879 52.8
CAN.G724.12 Capsicum annuum HOM05D001879 ORTHO05D007957 1.1e-241 840.5 796 57.0
vmacro22058 Vaccinium macrocarpon HOM05D001879 ORTHO05D007957 1.6e-240 836.6 924 53.5
Aqoxy6G02668 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 4.1e-239 832.0 817 55.2
Hund05306 Selenicereus undatus HOM05D001879 ORTHO05D007957 1.5e-238 830.1 940 50.0
Nitab4.5_0000164g0140 Nicotiana tabacum HOM05D001879 ORTHO05D007957 7.7e-238 827.8 889 53.4
Solyc04g077930.4 Solanum lycopersicum HOM05D001879 ORTHO05D007957 7.7e-238 827.8 754 58.8
Sopen04g031530 Solanum pennellii HOM05D001879 ORTHO05D007957 5.0e-237 825.1 744 58.9
THA.LOC104812592 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 1.0e-234 817.4 806 55.3
THA.LOC104820515 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 4.8e-232 808.5 884 53.4
HanXRQChr01g0027941 Helianthus annuus HOM05D001879 ORTHO05D007957 8.2e-232 807.7 883 53.3
Migut.N02775 Erythranthe guttata HOM05D001879 ORTHO05D007957 3.1e-231 805.8 801 55.4
AUR62038791 Chenopodium quinoa HOM05D001879 ORTHO05D007957 1.2e-230 803.9 890 52.0
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 2.2e-229 799.7 826 53.6
AUR62037429 Chenopodium quinoa HOM05D001879 ORTHO05D007957 8.5e-229 797.7 813 53.8
SalBow6G3417 Salvia bowleyana HOM05D001879 ORTHO05D007957 6.1e-227 791.6 886 53.4
AT1G27752 Arabidopsis thaliana HOM05D001879 ORTHO05D007957 1.0e-226 790.8 894 52.3
PSO675G4263 Papaver somniferum HOM05D001879 ORTHO05D007957 2.3e-226 789.6 768 57.2
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 2.6e-225 786.2 886 50.2
AL1G41290 Arabidopsis lyrata HOM05D001879 ORTHO05D007957 4.4e-225 785.4 826 52.9
Nn1g04585 Nelumbo nucifera HOM05D001879 ORTHO05D007957 2.8e-224 782.7 895 52.1
Sc26g0004180 Simmondsia chinensis HOM05D001879 ORTHO05D007957 2.8e-224 782.7 875 50.6
PSO541G1802 Papaver somniferum HOM05D001879 ORTHO05D007957 6.3e-224 781.6 778 56.2
Carub.0001s2627 Capsella rubella HOM05D001879 ORTHO05D007957 7.7e-222 774.6 797 54.0
Sp1g23990 Schrenkiella parvula HOM05D001879 ORTHO05D007957 4.2e-220 768.8 809 53.2
Oeu057374.1 Olea europaea HOM05D001879 ORTHO05D007957 2.7e-219 766.1 737 56.3
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 3.6e-219 765.8 778 54.5
A08p26070 Brassica napus HOM05D001879 ORTHO05D007957 6.1e-219 765.0 778 54.5
Thhalv10006764m.g Eutrema salsugineum HOM05D001879 ORTHO05D007957 1.0e-218 764.2 893 50.4
Aa31sc113G40 Aethionema arabicum HOM05D001879 ORTHO05D007957 2.3e-218 763.1 817 51.4
C03p74580 Brassica napus HOM05D001879 ORTHO05D007957 1.5e-217 760.4 882 51.9
BolC3t19706H Brassica oleracea HOM05D001879 ORTHO05D007957 6.3e-216 755.0 887 51.0
SGA_v2.0_scaffold152G36803 Striga asiatica HOM05D001879 ORTHO05D007957 1.0e-210 737.6 794 52.9
CDE02G0795 Ceratophyllum demersum HOM05D001879 ORTHO05D007957 2.3e-210 736.5 795 51.4
ATR0208G030 Amborella trichopoda HOM05D001879 ORTHO05D007957 3.2e-204 716.1 841 48.5
BcaC01g01572 Brassica carinata HOM05D001879 ORTHO05D007957 4.2e-204 715.7 889 49.9
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 4.2e-204 715.7 886 49.9
ECA246G2822 Erigeron canadensis HOM05D001879 ORTHO05D007957 1.2e-203 714.1 799 49.9
Thecc.08G089900 Theobroma cacao HOM05D001879 ORTHO05D007957 8.8e-202 708.0 679 59.6
Sed0020869 Sechium edule HOM05D001879 ORTHO05D007957 2.7e-198 696.4 695 55.8
PGSC0003DMG400021524 Solanum tuberosum HOM05D001879 ORTHO05D007957 3.9e-189 666.0 641 56.5
Zm00001eb007600 Zea mays HOM05D001879 ORTHO05D007957 4.0e-186 656.0 795 48.2
unitig_578.g16146 Utricularia gibba HOM05D001879 ORTHO05D007957 1.3e-181 641.0 792 47.2
Os03g0205000 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007957 8.6e-181 638.3 746 49.1
HPP92_009537 Vanilla planifolia HOM05D001879 ORTHO05D007957 8.9e-170 601.7 744 47.4
Lsat_1_v5_gn_6_112340 Lactuca sativa HOM05D001879 ORTHO05D007957 9.9e-169 598.2 869 44.5
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 1.9e-164 583.9 446 65.5
CARHR027270 Cardamine hirsuta HOM05D001879 ORTHO05D007957 2.6e-161 573.5 584 53.1
Haze_22326 Corylus avellana HOM05D001879 ORTHO05D007957 1.9e-159 567.4 490 60.8
TAR381G0637 Trochodendron aralioides HOM05D001879 ORTHO05D007957 3.5e-150 536.6 477 60.4
CSS0023334 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 5.1e-149 532.7 412 66.0
DCAR_009884 Daucus carota HOM05D001879 ORTHO05D007957 1.9e-148 530.8 880 41.0
Peaxi162Scf00081g00176 Petunia axillaris HOM05D001879 ORTHO05D007957 6.7e-141 505.8 580 49.5
MD03G1160700 Malus domestica HOM05D001879 ORTHO05D007957 5.3e-130 469.5 401 60.8
Mapoly0067s0042 Marchantia polymorpha HOM05D001879 ORTHO05D007957 1.7e-107 394.8 720 36.9
TAR381G1515 Trochodendron aralioides HOM05D001879 ORTHO05D007957 1.8e-93 348.2 379 53.6
SHI08396 Sapria himalayana HOM05D001879 ORTHO05D007957 8.8e-93 345.9 478 45.0
CANSAT25G3038 Cannabis sativa HOM05D001879 ORTHO05D007957 2.4e-90 337.8 222 75.2
SMO347G0602 Selaginella moellendorffii HOM05D001879 ORTHO05D007957 4.1e-90 337.0 802 32.7
Pp3c2_23190 Physcomitrium patens HOM05D001879 ORTHO05D007957 1.9e-87 328.2 1006 29.2
AagrBONN_evm.TU.Sc2ySwM_362.2893 Anthoceros agrestis HOM05D001879 ORTHO05D007957 1.2e-81 308.9 571 34.2
CBR_g57086 Chara braunii HOM05D001879 ORTHO05D007957 3.3e-79 300.8 1081 27.1
Haze_22325 Corylus avellana HOM05D001879 ORTHO05D007957 2.0e-60 238.4 220 62.3
SEGI_28261 Sequoiadendron giganteum HOM05D001879 ORTHO05D007957 8.1e-54 216.5 280 46.1
Atru.chr13.821 Acer truncatum HOM05D001879 ORTHO05D007957 1.3e-51 209.1 251 53.8
BraA09t40950Z Brassica rapa HOM05D001879 ORTHO05D007957 2.3e-48 198.4 167 63.5
CSS0041216 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 1.6e-41 175.6 199 50.3
SHI08398 Sapria himalayana HOM05D001879 ORTHO05D007957 1.4e-37 162.5 219 44.7
HanXRQChr05g0145561 Helianthus annuus HOM05D001879 ORTHO05D007957 4.0e-21 107.8 63 71.4
Cfa000625 Carpinus fangiana HOM05D001879 ORTHO05D007957 2.3e-16 92.0 137 48.2
MCO02G333 Micromonas commoda HOM05D001879 ORTHO05D007957 8.7e-16 90.1 749 24.8
SHI08400 Sapria himalayana HOM05D001879 ORTHO05D007957 2.4e-13 82.0 94 48.9
HPP92_009536 Vanilla planifolia HOM05D001879 ORTHO05D007957 4.1e-13 81.3 81 50.6
Cre13.g568750 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007957 2.0e-12 79.0 569 20.2
Cfa010565 Carpinus fangiana HOM05D001879 ORTHO05D007957 8.5e-11 73.6 48 75.0
C05p26450 Brassica napus HOM05D001879 ORTHO05D007957 1.2e-09 69.7 45 73.3
BolC5t31366H Brassica oleracea HOM05D001879 ORTHO05D007957 1.2e-09 69.7 45 73.3
AagrBONN_evm.TU.Sc2ySwM_368.1487 Anthoceros agrestis HOM05D001879 ORTHO05D007957 1.1e-07 63.2 96 42.7


User provided reference genes

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