Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 4769.1 2400 100.0
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 4170.9 2399 88.0
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 4165.5 2399 87.4
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 3863.9 2402 80.3
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 3857.0 2400 80.5
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 3853.5 2401 80.2
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 3797.7 2402 79.4
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 3777.6 2406 78.5
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 3656.7 2407 76.1
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 3642.8 2444 75.1
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 2946.4 2445 61.1
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 2923.3 2400 62.1
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 2912.1 2461 61.2
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 2864.7 1830 78.7
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 2845.8 2445 60.2
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 2822.7 2452 59.2
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2813.1 2423 59.2
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 2809.2 2415 59.7
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2799.2 2421 59.4
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 2788.8 1540 91.9
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2781.9 2439 59.1
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2773.8 2442 58.9
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 2772.7 2432 59.2
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 2755.7 2419 58.2
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2746.8 2457 57.4
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2739.9 2438 58.5
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 2738.4 2432 58.2
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2735.7 2457 57.3
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2734.9 2457 57.3
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2732.2 2457 57.1
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 2727.2 2450 58.6
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2721.4 2439 57.8
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 2721.4 2427 57.3
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2703.3 2414 58.2
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2668.6 2433 57.0
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2660.2 2426 56.3
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2656.3 2426 56.2
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2646.7 2436 56.2
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 2645.9 2432 56.6
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2643.2 2440 55.8
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2637.1 2480 56.0
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2590.1 2360 56.6
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2570.8 2452 54.6
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2568.9 2456 54.6
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2512.3 2436 54.1
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2506.9 2421 54.8
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2502.2 2438 53.6
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2481.8 2458 54.4
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2474.1 2101 60.9
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2473.0 2424 53.3
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2445.2 2386 53.8
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2444.8 2426 53.5
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2441.8 2420 53.3
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2438.3 2434 53.1
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2438.3 2427 52.9
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2431.4 2432 52.9
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2423.7 2433 53.5
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2419.8 2431 52.5
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2415.2 2439 52.5
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2409.8 2438 52.0
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2409.8 2418 52.2
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2400.2 2432 51.9
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2390.1 2390 52.8
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2380.5 2425 52.4
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2377.8 2434 52.1
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2376.7 2437 52.0
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2368.2 2432 52.1
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2362.0 2419 52.0
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2360.9 2434 51.4
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2359.7 2423 50.6
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2358.2 2461 51.4
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2357.8 2453 51.2
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2352.4 2431 51.6
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2352.0 2459 51.5
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2342.8 2432 51.7
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2332.0 2424 51.4
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2326.6 2453 50.8
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2322.7 2398 52.0
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2313.9 2427 51.6
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2306.9 2445 51.5
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2297.3 2427 51.3
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2295.0 2443 50.9
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2290.0 2438 50.3
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2275.4 2425 50.6
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2266.1 2428 50.5
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2264.6 2429 49.9
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2261.1 1960 59.2
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2259.6 1959 59.3
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2239.5 2417 50.4
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 2027.7 2272 48.9
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 2022.7 2393 46.5
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1968.7 2412 45.9
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1879.4 2510 43.3
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1727.2 1645 55.3
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1701.0 2322 42.3
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1682.5 1453 58.6
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1662.5 1453 58.2
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1582.0 1380 58.6
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1573.5 887 88.4
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1451.0 1457 52.7
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1376.3 1098 62.7
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1332.0 1381 51.5
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1262.3 1422 48.8
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1211.8 1513 45.3
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1152.1 1166 53.1
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1140.9 1045 55.6
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1081.6 851 66.6
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 4.1e-297 1026.2 1389 43.1
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 9.0e-284 981.9 1011 51.9
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 2.6e-275 953.7 1041 49.5
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 3.1e-268 930.2 2552 28.1
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 2.8e-253 880.6 2105 30.2
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 2.2e-245 854.4 2132 29.9
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.1e-236 825.5 1501 36.1
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 1.4e-212 745.3 800 49.8
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 1.9e-201 708.4 771 48.1
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 7.0e-196 689.9 2384 26.2
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 1.1e-175 622.9 785 42.3
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 4.5e-142 511.1 579 47.0
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 2.0e-126 459.1 267 85.8
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 6.1e-115 421.0 319 62.4
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 7.7e-102 377.5 463 45.4
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 2.7e-94 352.4 471 42.5
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 1.5e-89 336.7 326 50.6
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 4.4e-89 335.1 406 47.0
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 2.6e-81 309.3 318 53.5
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 1.5e-76 293.5 430 38.6
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 2.1e-75 289.7 314 51.6
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 8.6e-69 267.7 393 40.5
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 9.5e-68 264.2 343 42.0
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 1.2e-67 263.8 433 37.0
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 1.6e-67 263.5 277 55.6
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 1.4e-66 260.4 150 86.7
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 6.8e-66 258.1 227 53.3
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 6.4e-64 251.5 153 81.7
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 8.4e-56 224.6 478 32.0
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.6e-54 218.8 335 41.8
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.5e-49 203.8 266 46.6
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.6e-49 203.0 124 76.6
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.4e-47 196.4 187 56.1
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 2.1e-46 193.4 122 77.9
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 3.0e-45 189.5 122 82.0
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 4.3e-44 185.7 110 83.6
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 3.7e-43 182.6 124 70.2
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 8.4e-40 171.4 123 67.5
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 2.4e-39 169.9 189 52.9
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 3.2e-39 169.5 802 22.7
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 1.3e-32 147.5 117 63.2
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 2.2e-32 146.7 141 56.0
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 2.5e-31 143.3 321 36.8
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 9.3e-31 141.4 100 68.0
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.1e-28 134.4 83 80.7
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.7e-27 129.4 274 28.8
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 4.1e-26 125.9 119 57.1
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 4.5e-25 122.5 205 38.0
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 1.7e-24 120.6 118 55.9
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 2.5e-23 116.7 77 71.4
Psat0s2975g0040 Pisum sativum HOM05D000832 ORTHO05D000900 1.2e-14 87.8 51 76.5
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 1.2e-14 87.8 51 76.5
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 1.2e-14 87.8 51 76.5
A02p40370 Brassica napus HOM05D004333 ORTHO05D005363 1.7e-11 77.4 102 38.2
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.2e-11 77.0 179 34.1
Psat6g077920 Pisum sativum HOM05D003208 ORTHO05D009148 2.2e-11 77.0 49 73.5
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.1e-10 72.8 95 40.0
Psat3g007440 Pisum sativum HOM05D000832 ORTHO05D000900 3.4e-09 69.7 39 79.5
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 1.7e-08 67.4 99 39.4
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 2.5e-07 63.5 42 73.8
Psat0ss3938g0040 Pisum sativum HOM05D001673 ORTHO05D000895 3.2e-07 63.2 39 76.9
BcaC03g17980 Brassica carinata HOM05D004333 ORTHO05D005363 1.6e-06 60.8 40 67.5
Psat4g081160 Pisum sativum HOM05D001550 ORTHO05D001611 2.7e-06 60.1 49 55.1


User provided reference genes

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