Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 3.2e-213 745.0 413 100.0
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 2.9e-174 615.5 420 84.5
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 5.5e-165 584.7 417 80.8
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 3.5e-143 512.3 432 70.8
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 7.2e-133 478.0 419 69.9
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 3.7e-129 465.7 434 65.9
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 1.5e-125 453.8 442 63.6
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 5.4e-120 435.3 435 62.5
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.2e-119 434.1 434 61.8
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 2.0e-119 433.3 436 61.5
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 1.0e-118 431.0 426 63.1
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 1.7e-118 430.3 440 62.5
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 1.5e-109 400.6 419 60.9
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 1.6e-103 380.6 308 72.1
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 5.8e-90 335.5 434 51.4
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 7.8e-87 325.1 455 49.0
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 1.1e-85 321.2 417 53.5
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 9.6e-85 318.2 418 52.4
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 2.8e-84 316.6 419 52.0
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 6.2e-84 315.5 416 52.2
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 1.4e-83 314.3 416 52.4
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 9.0e-83 311.6 417 52.3
arahy.Tifrunner.gnm1.ann1.Z5WHM0 Arachis hypogaea HOM05D006277 ORTHO05D007673 3.4e-82 309.7 390 53.3
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 4.5e-82 309.3 454 48.9
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 1.7e-81 307.4 370 54.9
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 5.4e-80 302.4 414 50.7
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 1.3e-78 297.7 418 49.8
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 6.2e-76 288.9 448 48.9
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 9.0e-75 285.0 420 47.6
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 1.5e-74 284.3 443 47.4
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 4.5e-74 282.7 436 48.4
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 4.5e-74 282.7 443 47.0
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 5.8e-74 282.3 416 47.6
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.7e-73 280.8 292 60.6
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 1.1e-72 278.1 470 43.6
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 4.2e-72 276.2 427 47.8
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 1.2e-71 274.6 435 47.1
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 2.3e-70 270.4 306 56.9
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 1.5e-69 267.7 330 53.9
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 4.3e-69 266.2 447 44.1
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 7.4e-69 265.4 432 45.1
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 2.1e-68 263.8 427 46.1
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 2.1e-68 263.8 430 46.7
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 1.1e-67 261.5 433 44.8
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 1.4e-67 261.2 429 46.6
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.8e-67 260.8 429 46.6
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 9.0e-67 258.5 305 51.1
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 1.2e-66 258.1 405 46.7
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 2.0e-66 257.3 400 44.2
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 2.6e-66 256.9 429 46.4
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 3.4e-66 256.5 427 44.5
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 4.5e-66 256.1 425 45.6
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 5.8e-66 255.8 434 45.2
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 1.3e-65 254.6 376 46.0
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 3.2e-64 250.0 280 53.2
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 9.3e-64 248.4 436 43.6
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 1.0e-62 245.0 422 44.8
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 1.0e-62 245.0 434 44.7
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 1.3e-62 244.6 400 44.2
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 2.3e-62 243.8 423 45.6
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 1.9e-61 240.7 432 44.0
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 2.5e-61 240.4 368 46.5
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 9.6e-61 238.4 404 46.8
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 8.2e-60 235.3 425 42.8
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 1.8e-59 234.2 422 45.0
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 2.4e-59 233.8 353 47.6
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 4.1e-59 233.0 436 42.7
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 9.0e-59 231.9 205 63.4
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.0e-57 228.4 341 47.2
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 2.2e-57 227.3 305 51.5
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 5.0e-57 226.1 302 50.7
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 6.5e-57 225.7 426 42.3
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 2.5e-56 223.8 424 41.5
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 5.5e-56 222.6 418 43.1
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 1.2e-55 221.5 357 44.0
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 3.6e-55 219.9 405 44.2
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 1.8e-54 217.6 423 42.6
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 2.3e-54 217.2 361 44.3
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 5.1e-54 216.1 437 41.6
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 5.1e-54 216.1 366 46.4
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 8.7e-54 215.3 304 46.7
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 8.7e-54 215.3 189 63.5
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.3e-52 211.5 400 40.5
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 2.2e-52 210.7 320 45.3
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 3.7e-52 209.9 439 41.7
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 2.4e-51 207.2 438 41.1
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 2.4e-51 207.2 248 52.0
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 2.4e-51 207.2 324 44.4
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 2.9e-49 200.3 419 40.8
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 3.8e-49 199.9 440 41.6
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 5.5e-48 196.1 405 41.2
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 7.2e-48 195.7 305 45.6
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 9.4e-48 195.3 312 46.2
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 1.2e-47 194.9 450 40.7
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 1.6e-47 194.5 258 48.8
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 3.6e-47 193.4 309 45.0
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 7.9e-47 192.2 358 43.9
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 7.9e-47 192.2 377 41.4
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 3.0e-46 190.3 511 35.6
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 1.5e-45 188.0 256 49.2
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 3.3e-45 186.8 342 40.4
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 5.7e-45 186.0 261 46.7
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 1.3e-44 184.9 296 45.9
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 2.2e-44 184.1 362 40.6
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 3.1e-43 180.3 478 37.0
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 6.9e-43 179.1 454 38.3
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 1.0e-41 175.3 424 40.1
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 1.3e-41 174.9 417 34.8
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 7.2e-40 169.1 162 61.1
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 2.6e-37 160.6 433 37.4
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 2.0e-34 151.0 143 53.8
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 2.2e-33 147.5 222 46.4
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 2.9e-33 147.1 170 52.9
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 2.7e-31 140.6 249 39.8
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 4.7e-31 139.8 218 43.6
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 6.7e-30 136.0 209 45.0
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 8.8e-30 135.6 186 47.8
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 1.7e-28 131.3 107 62.6
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 8.2e-28 129.0 380 36.3
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 8.2e-28 129.0 170 45.9
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 2.5e-24 117.5 277 34.3
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 4.4e-21 106.7 195 41.5
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 5.7e-21 106.3 167 39.5
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 3.7e-20 103.6 145 44.1
CiPaw.10G123600 Carya illinoinensis HOM05D006277 ORTHO05D007673 4.9e-12 76.6 66 66.7
MCO04G384 Micromonas commoda HOM05D006277 ORTHO05D007673 5.4e-11 73.2 121 34.7
Nn5g26949 Nelumbo nucifera HOM05D006277 ORTHO05D007673 7.0e-11 72.8 49 67.3
Glyma.03G049200 Glycine max HOM05D006277 ORTHO05D007673 6.6e-09 66.2 60 68.3
Cre02.g105050 Chlamydomonas reinhardtii HOM05D006277 ORTHO05D007673 1.4e-06 58.5 136 30.9
Hma1.2p1_1235F.1_g269240 Hydrangea macrophylla HOM05D006277 ORTHO05D007673 4.0e-06 57.0 164 35.4


User provided reference genes

Program Settings