Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 2.1e-213 745.3 351 100.0
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 2.9e-207 724.9 351 96.6
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 2.8e-202 708.4 351 94.0
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 1.9e-195 685.6 351 90.6
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 2.7e-189 665.2 351 87.7
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 7.9e-189 663.7 318 96.5
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 4.3e-187 657.9 351 87.2
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 1.6e-186 656.0 351 87.2
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 3.7e-186 654.8 351 86.6
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 2.3e-180 635.6 338 85.5
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 6.7e-180 634.0 337 85.5
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 6.7e-172 607.4 352 80.4
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 7.4e-171 604.0 351 80.1
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 2.4e-169 599.0 351 78.1
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 5.3e-169 597.8 352 78.7
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 5.3e-169 597.8 352 78.7
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 1.0e-167 593.6 353 77.1
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.3e-167 593.2 353 78.2
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 2.2e-167 592.4 352 78.1
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 1.9e-166 589.3 352 77.0
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 5.5e-166 587.8 352 76.1
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 7.2e-166 587.4 352 77.6
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 9.4e-166 587.0 353 77.3
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 2.1e-165 585.9 352 75.6
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 4.7e-165 584.7 350 75.7
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 4.7e-165 584.7 352 77.3
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 4.7e-165 584.7 352 76.1
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 4.7e-165 584.7 352 75.0
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 4.7e-165 584.7 352 78.1
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.8e-164 582.8 350 75.1
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 2.3e-164 582.4 351 74.9
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 6.7e-164 580.9 352 75.3
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 6.7e-164 580.9 352 76.7
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 8.8e-164 580.5 350 75.4
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 1.1e-163 580.1 354 77.4
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 3.3e-163 578.6 349 75.4
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 3.3e-163 578.6 350 75.1
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 2.8e-162 575.5 352 74.7
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 2.8e-162 575.5 351 73.5
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 8.2e-162 573.9 350 74.0
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 1.4e-161 573.2 350 74.0
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.8e-161 572.8 352 76.1
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 1.8e-161 572.8 339 77.3
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 3.1e-161 572.0 350 74.0
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 5.3e-161 571.2 350 74.0
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 5.3e-161 571.2 350 74.0
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 1.6e-160 569.7 350 74.0
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 2.0e-160 569.3 361 74.2
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 5.9e-160 567.8 355 73.2
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 1.7e-159 566.2 351 72.6
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 3.2e-158 562.0 351 72.6
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 5.5e-158 561.2 339 75.2
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 1.2e-157 560.1 352 73.0
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 1.6e-157 559.7 352 72.7
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 8.0e-157 557.4 351 72.9
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.8e-156 556.2 358 73.2
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 1.2e-155 553.5 354 74.3
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 3.3e-155 552.0 337 73.9
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 5.7e-155 551.2 350 72.9
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 5.7e-155 551.2 351 70.4
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 7.5e-155 550.8 353 71.4
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 9.7e-155 550.4 351 70.4
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 2.8e-154 548.9 351 70.4
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 6.3e-154 547.7 351 70.7
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 6.3e-154 547.7 351 70.7
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 5.3e-153 544.7 374 69.3
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 1.2e-152 543.5 351 70.9
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 1.6e-152 543.1 351 70.4
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 2.7e-152 542.3 351 69.5
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 2.7e-152 542.3 352 70.2
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 3.5e-152 542.0 351 70.1
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 2.9e-151 538.9 339 72.6
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 6.5e-151 537.7 352 70.5
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 8.5e-151 537.3 349 69.6
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 1.5e-150 536.6 319 76.5
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 5.5e-150 534.6 351 69.5
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 1.2e-149 533.5 351 69.2
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 1.2e-149 533.5 351 69.2
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 2.7e-149 532.3 352 69.6
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.0e-148 530.4 319 75.9
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 1.4e-148 530.0 347 68.3
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 8.8e-148 527.3 351 68.7
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 3.4e-147 525.4 351 68.4
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 4.8e-146 521.5 351 68.1
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 6.3e-146 521.2 351 68.4
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 2.4e-145 519.2 269 88.1
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 2.4e-145 519.2 351 65.8
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 9.1e-145 517.3 339 69.6
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 7.7e-144 514.2 351 67.5
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 3.8e-143 511.9 392 63.0
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 1.1e-142 510.4 417 59.2
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 7.2e-142 507.7 352 69.3
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 2.1e-141 506.1 347 69.5
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 6.3e-138 494.6 338 64.8
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 4.5e-136 488.4 294 75.2
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.3e-135 486.9 342 67.3
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 1.1e-134 483.8 299 73.6
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 1.1e-134 483.8 299 73.6
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 4.3e-134 481.9 285 75.4
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 2.6e-131 472.6 352 60.8
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 1.1e-129 467.2 319 65.8
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 3.2e-129 465.7 352 60.5
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 2.7e-128 462.6 395 58.2
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 5.0e-127 458.4 318 66.4
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 6.8e-124 448.0 352 58.0
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 8.9e-124 447.6 309 67.6
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 2.0e-123 446.4 296 69.6
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 2.6e-123 446.0 322 66.1
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 1.2e-120 437.2 255 77.3
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 3.5e-112 409.1 263 71.9
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 4.3e-110 402.1 353 58.1
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 1.3e-103 380.6 223 78.9
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 2.7e-96 356.3 201 80.6
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 1.3e-87 327.4 180 83.9
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 8.1e-85 318.2 203 70.9
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 2.9e-82 309.7 229 59.8
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 2.1e-80 303.5 346 39.9
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 2.3e-79 300.1 354 40.1
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 4.5e-75 285.8 200 65.5
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.2e-72 277.7 161 76.4
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 3.0e-71 273.1 345 39.4
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 8.5e-66 255.0 199 60.8
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 7.2e-57 225.3 129 76.7
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 4.5e-51 206.1 125 75.2
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 5.5e-49 199.1 121 71.9
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 2.1e-48 197.2 371 29.1
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 1.8e-44 184.1 108 77.8
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 8.0e-40 168.7 87 89.7
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 3.1e-36 156.8 129 58.1
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 5.0e-34 149.4 225 38.7
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 4.9e-29 132.9 306 25.8
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 3.3e-25 120.2 71 71.8
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 4.2e-25 119.8 82 62.2
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 2.3e-23 114.0 76 72.4
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 7.8e-19 99.0 60 70.0
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 8.6e-18 95.5 147 38.8
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 8.6e-18 95.5 73 56.2
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 2.5e-17 94.0 69 59.4
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 1.6e-16 91.3 209 26.8
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 7.5e-14 82.4 54 75.9
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 9.8e-14 82.0 42 83.3
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.3e-13 81.6 44 81.8
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 1.3e-13 81.6 371 22.4
Peaxi162Scf00362g00643 Petunia axillaris HOM05D000347 ORTHO05D001997 5.4e-12 76.3 226 26.1
Pp3c9_15370 Physcomitrium patens HOM05D005549 ORTHO05D006771 3.5e-11 73.6 227 25.6
Glyma.12G033100 Glycine max HOM05D000347 ORTHO05D001997 1.7e-10 71.2 147 26.5
Lj9A393T56 Lonicera japonica HOM05D000347 ORTHO05D001997 3.0e-10 70.5 220 22.3
Glyma.11G091500 Glycine max HOM05D000347 ORTHO05D001997 8.6e-10 68.9 143 27.3
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 1.5e-09 68.2 170 30.0
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 5.6e-09 66.2 100 40.0
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 7.3e-09 65.9 69 47.8
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 7.3e-09 65.9 216 22.2
FvH4_2g01180 Fragaria vesca HOM05D000347 ORTHO05D001997 7.3e-09 65.9 147 25.9
FAN24G3508 Fragaria x ananassa HOM05D000347 ORTHO05D001997 7.3e-09 65.9 147 25.9
FAN15G3271 Fragaria x ananassa HOM05D000347 ORTHO05D001997 1.6e-08 64.7 147 25.2
FAN20G0646 Fragaria x ananassa HOM05D000347 ORTHO05D001997 1.6e-08 64.7 147 25.2
AagrBONN_evm.TU.Sc2ySwM_228.219 Anthoceros agrestis HOM05D002302 ORTHO05D002728 2.1e-08 64.3 161 25.5
Solyc01g111590.4 Solanum lycopersicum HOM05D000347 ORTHO05D001997 2.1e-08 64.3 147 25.9
FAN27G1321 Fragaria x ananassa HOM05D000347 ORTHO05D001997 3.6e-08 63.5 147 25.9
EL10Ac8g20396 Beta vulgaris HOM05D000836 ORTHO05D000709 4.7e-08 63.2 229 21.8
Ah.14g089530 Amaranthus hybridus HOM05D000836 ORTHO05D000709 8.1e-08 62.4 154 24.7
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 8.1e-08 62.4 32 81.2
Cre02.g109150 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 1.1e-07 62.0 77 32.5
Nitab4.5_0003914g0030 Nicotiana tabacum HOM05D000347 ORTHO05D001997 1.1e-07 62.0 148 23.6
ATR0304G001 Amborella trichopoda HOM05D000347 ORTHO05D038333 4.0e-07 60.1 144 26.4
Nitab4.5_0000283g0360 Nicotiana tabacum HOM05D000347 ORTHO05D001997 4.0e-07 60.1 127 22.8
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 4.0e-07 60.1 46 56.5
BcaC06g36592 Brassica carinata HOM05D002302 ORTHO05D002728 8.9e-07 58.9 156 23.7
A07p01270 Brassica napus HOM05D002302 ORTHO05D002728 8.9e-07 58.9 156 23.7
BraA07t27917Z Brassica rapa HOM05D002302 ORTHO05D002728 8.9e-07 58.9 156 23.7
Mapoly0100s0059 Marchantia polymorpha HOM05D000684 ORTHO05D000688 8.9e-07 58.9 164 25.0
PGSC0003DMG400006171 Solanum tuberosum HOM05D000347 ORTHO05D001997 8.9e-07 58.9 147 25.9
BcaB03g16740 Brassica carinata HOM05D002302 ORTHO05D002728 1.5e-06 58.2 156 23.7
C07p02560 Brassica napus HOM05D002302 ORTHO05D002728 1.5e-06 58.2 156 23.7
BolC7t40654H Brassica oleracea HOM05D002302 ORTHO05D002728 1.5e-06 58.2 156 23.7
Gohir.A01G002500 Gossypium hirsutum HOM05D000347 ORTHO05D001997 2.0e-06 57.8 152 22.4
Gorai.002G002900 Gossypium raimondii HOM05D000347 ORTHO05D001997 2.0e-06 57.8 152 22.4
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 2.0e-06 57.8 41 53.7
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 3.4e-06 57.0 125 30.4
BcaC04g22846 Brassica carinata HOM05D002302 ORTHO05D002728 5.8e-06 56.2 156 23.1
C09p14700 Brassica napus HOM05D002302 ORTHO05D002728 5.8e-06 56.2 156 23.1
BolC9t54373H Brassica oleracea HOM05D002302 ORTHO05D002728 5.8e-06 56.2 156 23.1


User provided reference genes

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