Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 0.0e+00 1640.9 825 100.0
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 0.0e+00 1441.8 816 89.8
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 0.0e+00 1342.8 830 82.8
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 0.0e+00 1317.0 831 80.9
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 0.0e+00 1105.9 795 70.6
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 0.0e+00 1095.5 828 67.5
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 0.0e+00 1092.0 795 70.1
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 0.0e+00 1088.9 833 68.2
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 0.0e+00 1083.6 847 65.9
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 0.0e+00 1077.8 834 67.3
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 8.0e-309 1063.5 822 67.9
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 1.3e-250 870.2 835 57.5
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 3.5e-219 765.8 620 63.2
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 9.8e-206 721.1 838 48.7
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 4.1e-204 715.7 834 48.7
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 9.2e-204 714.5 655 58.6
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 1.0e-202 711.1 802 49.4
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.7e-202 710.3 802 49.4
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 1.2e-200 704.1 792 52.5
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 4.7e-200 702.2 844 49.2
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 2.0e-198 696.8 804 49.5
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 2.2e-197 693.3 842 49.8
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 5.6e-193 678.7 833 48.4
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 7.3e-193 678.3 812 47.3
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 4.1e-188 662.5 806 48.1
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 6.0e-187 658.7 817 46.9
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 3.9e-186 656.0 814 48.2
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 6.6e-186 655.2 834 46.3
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 1.5e-185 654.1 819 47.6
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 1.2e-182 644.4 863 48.4
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 2.6e-182 643.3 824 46.7
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 3.4e-182 642.9 819 46.8
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 3.0e-178 629.8 834 46.6
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 6.2e-176 622.1 1001 40.5
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 4.2e-172 609.4 509 62.3
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 4.6e-171 605.9 941 41.0
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.0e-170 603.2 796 45.2
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 8.7e-170 601.7 961 40.1
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.6e-169 599.0 797 44.7
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.4e-167 594.3 833 43.6
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.8e-167 594.0 829 43.3
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.3e-167 592.4 832 42.9
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 3.6e-160 569.7 1031 38.6
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.4e-159 567.8 940 39.8
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 2.4e-159 567.0 840 41.3
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 1.3e-157 561.2 825 42.8
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 6.4e-157 558.9 793 43.8
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 7.1e-156 555.4 791 42.7
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 1.1e-153 548.1 888 39.8
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 7.4e-153 545.4 781 43.1
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 7.4e-153 545.4 836 41.9
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 9.6e-153 545.0 845 42.0
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 1.0e-149 535.0 827 40.9
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.3e-149 534.6 979 37.6
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 2.5e-148 530.4 831 40.4
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 9.3e-148 528.5 837 39.4
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 2.1e-147 527.3 833 39.4
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 3.5e-147 526.6 825 40.6
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 2.3e-146 523.9 821 39.7
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 3.9e-146 523.1 835 40.6
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 3.7e-144 516.5 848 40.1
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.8e-141 506.5 811 40.3
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 8.5e-141 505.4 828 40.1
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 1.8e-138 497.7 805 40.1
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 5.1e-138 496.1 844 39.3
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 1.4e-135 488.0 792 39.4
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 3.1e-135 486.9 819 38.7
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 6.9e-135 485.7 821 39.0
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 1.2e-134 485.0 819 38.3
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.5e-134 484.6 761 40.3
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 1.0e-133 481.9 661 44.0
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 5.0e-133 479.6 810 39.0
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.4e-132 478.0 834 38.6
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 3.2e-132 476.9 828 39.4
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 5.5e-132 476.1 810 40.1
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.6e-131 474.6 821 37.8
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.7e-131 473.8 789 38.8
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.3e-130 470.7 843 36.7
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 5.1e-130 469.5 858 38.9
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.0e-129 467.6 809 38.9
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.2e-128 464.2 562 47.3
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.4e-127 461.5 835 37.0
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.6e-126 457.2 771 37.9
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 1.0e-125 455.3 834 37.1
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 1.3e-125 454.9 813 36.7
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 6.5e-125 452.6 840 36.3
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 6.5e-125 452.6 897 35.2
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.2e-123 448.4 876 36.8
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 1.7e-120 438.0 813 36.8
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 7.0e-119 432.6 815 36.2
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 2.7e-115 420.6 860 35.6
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 4.0e-114 416.8 673 40.0
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.1e-111 408.7 817 34.9
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 3.8e-109 400.2 735 38.2
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 1.9e-108 397.9 717 39.1
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 5.5e-108 396.4 808 34.7
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 9.4e-108 395.6 816 35.4
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 6.1e-107 392.9 800 34.5
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 1.2e-97 362.1 822 33.9
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 4.4e-97 360.1 796 32.7
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.0e-94 351.3 568 40.7
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 2.6e-89 334.3 488 41.8
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.9e-84 318.2 475 43.2
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 4.3e-84 317.0 573 37.9
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.2e-78 298.9 651 33.5
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 8.6e-77 292.7 848 29.0
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.5e-76 291.2 707 32.2
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 5.6e-76 290.0 461 40.3
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 2.1e-75 288.1 479 37.8
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 5.8e-73 280.0 460 37.8
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 2.2e-72 278.1 463 38.2
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 1.6e-70 271.9 617 33.4
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 2.7e-70 271.2 467 37.0
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 4.6e-70 270.4 486 37.2
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 6.0e-70 270.0 465 36.8
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 7.8e-70 269.6 445 38.4
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 7.8e-70 269.6 445 38.4
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 1.1e-68 265.8 453 37.7
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.5e-68 264.6 776 30.2
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 5.6e-68 263.5 436 37.4
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 3.6e-67 260.8 840 28.2
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 6.2e-67 260.0 784 28.8
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.8e-66 258.5 580 32.2
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 3.1e-66 257.7 451 36.6
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 8.9e-66 256.1 801 28.0
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.2e-64 251.5 560 32.5
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 6.4e-64 250.0 510 34.9
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.1e-63 249.2 847 29.9
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.1e-63 249.2 423 38.5
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.0e-61 242.7 701 29.2
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 3.0e-61 241.1 510 33.5
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 8.6e-61 239.6 526 33.3
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 7.3e-60 236.5 474 34.4
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 2.4e-58 231.5 457 35.9
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 2.9e-56 224.6 764 28.4
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 3.8e-56 224.2 593 31.2
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.1e-55 222.6 382 37.4
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.4e-50 204.9 354 36.2
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.6e-49 201.4 192 57.3
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 1.3e-48 199.1 263 46.4
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 8.4e-48 196.4 288 44.1
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 4.3e-44 184.1 487 28.7
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 5.6e-44 183.7 456 32.9
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 6.9e-42 176.8 469 30.9
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 5.8e-41 173.7 489 29.7
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.1e-36 159.5 827 23.7
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 2.6e-33 148.3 449 26.3
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 3.2e-31 141.4 105 61.0
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 1.9e-28 132.1 402 31.8
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 3.3e-28 131.3 390 31.8
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 4.5e-25 120.9 102 52.9
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.9e-23 115.5 748 21.5
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 7.9e-22 110.2 153 43.8
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.9e-20 105.5 151 35.8
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 5.7e-20 104.0 109 53.2
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 3.0e-13 81.6 78 43.6
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 2.8e-11 75.1 73 46.6
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 8.2e-11 73.6 111 33.3
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 6.9e-10 70.5 81 46.9
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-06 59.3 82 31.7


User provided reference genes

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